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Properties
| Property Name | Value |
|---|
| Product | Tex-like protein, HTH domain protein |
| Orig transcript id | gnl|cribi|Naga_100340g4.5995.mrna |
| Orig protein id | gnl|cribi|Naga_100340g4.5995 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:323882..324675 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8000 ID=rna8000|Name=rna8000|organism=Nannochloropsis gaditana|type=mRNA|length=843bp
ATGGAGGCGGGGCACACTTGTCGAGGGAGAGGGGCTGCAGCCTGCAAAGA
GGATGACTCAGAGCAAGCCGCGAGAGATAGAGGGGAAGGTGTAATGACGC
TGTACGCCCACCCGGAATTTGAGGCCGAATTCGGGGAGCTGGTGGGGACT
GTTATCGCCGATGCCGTGTCGGACGATCCACCAGGGGCGAAGACGTCTCG
GGGAACGAAAGGCGGGCACGAGGCAGCTTCCCCCACCCCTCCCTGCCTCC
TTCCAGCCTCACCCTCCAAGGCTGGGCCCGGCACCCTACTCCTTTACGTG
GCTTTTGTCTGCACAGGTCGCCTCGACGACCCCATCCACACGCATGCTCT
CAAACCCTTTCTCGCCGCTGGCGCCTCCGTCGTGCTGTTTCTGCTTCGAG
CGGGGCGGGGGAATCAAGTGGCTCGAATCCAGCCCCGGCAAGAGCTGACG
GGATTGCCGTGCTTCGAGTTCTTGGTCTTCAAGAGAGCGTTACAGAGGAC
GGAGGACGGGTATGCGAAGGAGGTGAGGCTTCTGAGGTCCTTTCTTGTCA
AGTCTCTTCCATCGCTCCGCGTGCAAAGCGCAGATCTGGGCGCAGCAACA
GAGGGAGTGACTGCAGAAGGAGTGCGACCAGGCAAGTATGGAGCGCCGGC
GGACGAACAAAAGGGGTTGCCCTCTCTGACAGACTATTTGTTCCGGCATA
GGACTGACAACAACAACTCGCATCATCATGAGGATGCCGACATAAAACAT
TTCAACACGAGACTAAAATGGAATAAAATTGTCAAAAACAAACTTGCATA
CGTCTTGCAACATCAGGAAAGTTTACGAAAGGAAAATAAGTAA back to topprotein sequence of rna8000 >rna8000-protein ID=rna8000-protein|Name=rna8000|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MDHATQHRTMPHPLLMGWLFKQANLMNLYGAMKAYGFHRVYRRLLEANNR
LMDNSQDRRIVRENIKQAMRAPNHVVEILDESHTVAFLTRYAKELTTGLE
TRAPPFFVNAARVVLQKTPMGRLLRVFSDWQDTSRRKKGTPPKPPT back to topmRNA from alignment at KK037247.1:323882..324675+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8000 ID=rna8000|Name=rna8000|organism=Nannochloropsis gaditana|type=mRNA|length=794bp|location=Sequence derived from alignment at KK037247.1:323882..324675+ (Nannochloropsis gaditana)
AACGACACACTGCGAGTCACGCTTTTATCCTTAGTCAGTGCGCTCTCGCT
TATATCGAGCTACTTATCCTCCATTTGCCACATTAACCTTTTCCATACAT
CTCAAAGTATTTTGTGAAGCCCTATATTCGGTCACAAGAATCGCCTTTTC
AGGGAGTGAGCACAAGGTTTCCGGGGCGGATGATGCCGTGACTAATGGAC
CACGCAACTCAACACAGGACGATGCCTCATCCACTTCTGATGGGCTGGCT
CTTTAAACAGGCCAATCTCATGAACCTGTACGGAGCCATGAAAGCATACG
GTTTCCATCGGGTATATCGTCGCCTCTTGGAGGCGAACAACCGGCTTATG
GACAACTCGCAAGACAGGCGCATTGTCCGTGAGAACATCAAGCAGGCCAT
GCGTGCACCCAATCACGTAGTCGAGATCCTAGATGAATCCCACACGGTGG
CTTTCCTTACTCGGTATGCTAAGGAGCTGACGACAGGTCTCGAAACCAGG
GCGCCGCCTTTTTTCGTGAATGCTGCCAGGGTCGTGTTGCAGAAAACACC
GATGGGCAGGTTGCTTAGAGTTTTTTCGGATTGGCAGGATACAAGTCGTA
GGAAGAAGGGCACCCCACCGAAGCCGCCAACGTGATGTAGATACTCAGGT
ATAAGGAGCCCTCGTGTgcagagggaagacgagggcgaTTGAGATGCTGC
ACGATGGTGCCGCCGCAGCGTGAAATAGATGAGCGGACATTCGATGTTTA
ATAAAGCCCAATTTGTACACCATTCAATCGCAATAGGATAATCG back to topCoding sequence (CDS) from alignment at KK037247.1:323882..324675+ >rna8000 ID=rna8000|Name=rna8000|organism=Nannochloropsis gaditana|type=CDS|length=441bp|location=Sequence derived from alignment at KK037247.1:323882..324675+ (Nannochloropsis gaditana)
ATGGACCACGCAACTCAACACAGGACGATGCCTCATCCACTTCTGATGGG
CTGGCTCTTTAAACAGGCCAATCTCATGAACCTGTACGGAGCCATGAAAG
CATACGGTTTCCATCGGGTATATCGTCGCCTCTTGGAGGCGAACAACCGG
CTTATGGACAACTCGCAAGACAGGCGCATTGTCCGTGAGAACATCAAGCA
GGCCATGCGTGCACCCAATCACGTAGTCGAGATCCTAGATGAATCCCACA
CGGTGGCTTTCCTTACTCGGTATGCTAAGGAGCTGACGACAGGTCTCGAA
ACCAGGGCGCCGCCTTTTTTCGTGAATGCTGCCAGGGTCGTGTTGCAGAA
AACACCGATGGGCAGGTTGCTTAGAGTTTTTTCGGATTGGCAGGATACAA
GTCGTAGGAAGAAGGGCACCCCACCGAAGCCGCCAACGTGA back to top
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