EWM22699.1, cds7978 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22699.1
Unique Name	cds7978
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037247.1:324076..324516 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22699.1
Product	Tex-like protein, HTH domain protein
Orig transcript id	gnl\|cribi\|Naga_100340g4.5995.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:324076..324516 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR023319	Tex-like_HTH_dom

Homology

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BLAST of EWM22699.1 vs. NCBI_GenBank
Match: gi|585103267|gb|EWM22699.1| (Tex-like protein, HTH domain protein [Nannochloropsis gaditana])

HSP 1 Score: 305.064 bits (780), Expect = 5.006e-105
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query:    1 MDHATQHRTMPHPLLMGWLFKQANLMNLYGAMKAYGFHRVYRRLLEANNRLMDNSQDRRIVRENIKQAMRAPNHVVEILDESHTVAFLTRYAKELTTGLETRAPPFFVNAARVVLQKTPMGRLLRVFSDWQDTSRRKKGTPPKPPT 146
            MDHATQHRTMPHPLLMGWLFKQANLMNLYGAMKAYGFHRVYRRLLEANNRLMDNSQDRRIVRENIKQAMRAPNHVVEILDESHTVAFLTRYAKELTTGLETRAPPFFVNAARVVLQKTPMGRLLRVFSDWQDTSRRKKGTPPKPPT
Sbjct:    1 MDHATQHRTMPHPLLMGWLFKQANLMNLYGAMKAYGFHRVYRRLLEANNRLMDNSQDRRIVRENIKQAMRAPNHVVEILDESHTVAFLTRYAKELTTGLETRAPPFFVNAARVVLQKTPMGRLLRVFSDWQDTSRRKKGTPPKPPT 146

The following BLAST results are available for this feature:

BLAST of EWM22699.1 vs. NCBI_GenBank

BLAST of EWM22699.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103267\|gb\|EWM22699.1\|	5.006e-105	100.00	Tex-like protein, HTH domain protein [Nannochlorop...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8000	rna8000	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications