rna80, rna80 (mRNA) Nannochloropsis gaditana

Overview
Namerna80
Unique Namerna80
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1489
Alignment locationCM002455.1:222173..223841 +

Link to JBrowse

Properties
Property NameValue
ProductCyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein
Orig transcript idgnl|cribi|Naga_100033g4.8396.mrna
Orig protein idgnl|cribi|Naga_100033g4.8396
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:222173..223841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g4gene78Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna80rna80-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30557.1cds80Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna80 ID=rna80|Name=rna80|organism=Nannochloropsis gaditana|type=mRNA|length=1489bp
CGGCAGATTGTGACGGGTTGGGCTATCGCATTTTCATCCGGTACATACGT
GCATATGTGCAATTGGCATGTTATTTTTATTTTGGCATGACTAGCATTGG
CTGTGTTGTACCGACGGCGGGACCTCCCCGCTGCGGCACAGATAGTACCG
TCATGCTTGCTTTATGCGCTACCAGCTGAAAAATATGCATTTCGTTCCTT
GTTATTTCTCGCTACTATTCTACTTCAGGAGCGGTGAAGTGGTGAGGCAT
CCCTTCCCACGAAGCACTAGTGGTATGGATGGAAAGGCAAACAAAGACTC
AACGGAGCTATGTCGTCGGCGAAAGGAAGAACAATTGGGTCAGGACAGAG
CGCGTGATAAAGAAGCCGCAGAAAACGGGGATGCACTGGGAGAAGAGGAG
GAGATATTGGTGATGGTAGACTTGCCTGAATACGCTGGCGTTGCTTTATT
CGAAGAGGCGGAGTCCATTGAGATCAAGAATATTGCAGGACCCGGCGCTC
CCGAATTGGTTGTGAATGGCGTTCGCAATTTCAAAGGCCACTACGAAGAT
CCGCTGGGCTCGAGCTTGATCGTAAATGACCACCGCATCGACCATACCTG
CATTCGGCAGGGCGCGCGAAAAAAGGGGCGGCCACGGAGTGAGAGCTTGG
AGGAAGAATTGCGAGAGAAGGAGAAGAACTTCACTGGCGAGGGGCTAGGA
GGGAAGGAAATTTGCGGGGAAGAAGTGGGAAATGACGGGCGAAGAAGTTG
GAAGGGTGCTAGGAGGGAGTTATGGAACGGGAGGGATAGAGGCAAAGAAA
GGGTGGAGAGGAATTGTGAGGGAACGGGAGAGAGGGACGATGGTGGCAGG
AAAGAGCAGGGGGAAATGGAGCCTGCAGCACTTTCAATAGCTTCGAAGGT
CTTGGTATTTTTGGAGGAGAGACACAGCAGAGGCAGCGCATTGATGGATC
AGGATGGGATGTCAAGGAGGCGGGAGCGGAAAGGAGCTTGGGATACGAGA
GGTGAACAGGGAAACGAAAGAGATGGGACAGAGGAGGAAGAAGTGGGAAG
AGAAGAGGAGGACGAGGAGGGGAGAGAGGAAGAGGAGGCCGGGGGGGAGG
CGGAGGATGAAGAAGAAGATGATGAAGACTACGATGATGAAGAAGACAAT
GAAGACAATGAAGACGATGATGACGACGACGAAGATGGAGAGGTGGCTGA
GGAGGAGGAGGACGAGGACGACTAGGAAGACGCGTCAACAGGTATAGGTG
CAGACAACGCGAGAAACCCATGTATATATGTATGTTAAAGGTAACATCTC
CACCCTGCATATGTCACGTCATTTACTGACGCCAACAAAAGGAATTGCTT
GCATTGACGAACATTACTACAATTGGACCTACATCCATCCAGCTTTGTAA
ACCTGCAAGCTTGGAGATTACTTTTTAACTTGCAGCAAATCATAGTGGGA
GAGGAGGTTAGTAATGCAATATAGCAATTTATCAACTGT
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protein sequence of rna80

>rna80-protein ID=rna80-protein|Name=rna80|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
MDGGSRASHRVHGPTTSTPEYKVKHNKSSHVRGILLNSRALKLLLFFLGF
LYVGVIFYCRSLLHERDDAFKSEKLKWSNELYRLHDQRSEELARSRKALT
EMEKVLEQKDEALTKAEQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLR
WGEGPVRVLLELGGSPGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGF
WDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVF
QEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGPEPDPCFA
EVVKGKDVLEKVHQKLTTGFLKEEDFVLIRRMLIKGEEKGT
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mRNA from alignment at CM002455.1:222173..223841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna80 ID=rna80|Name=rna80|organism=Nannochloropsis gaditana|type=mRNA|length=1669bp|location=Sequence derived from alignment at CM002455.1:222173..223841+ (Nannochloropsis gaditana)
AAACTAAGAGTCCCAAGACAGCTCGAAAACAAACCCACTCATGCATTAAA
GATACAGGCCAATTCTGGGCATATTTCTGATCATGTTCTTCATGGAATAA
GCAGCAAATAAATTTAGGAGCCCGCAGGCAAGGGTTCCACGAAATATCAA
GGTCTTTCGTCCCCCGGCATATTCGTTGCCGAGGAGGGGTACTAAAGGCG
ACAAAATGGACGGAGGCAGCCGAGCAAGCCATCGCGTTCATGGACCAACT
ACTAGCACTCCTGAATACAAAGTCAAGCATAATAAATCAAGTCATGTACG
CGGCATTTTATTGAATAGTCGAGCTCTTAAACTCTTGCTCTTTTTTCTAG
GCTTCTTGTATGTAGGAGTCATCTTCTACTGTCGTTCCTTACTGCACGAG
CGGGACGATGCATTTAAGAGCGAGAAATTGAAGTGGTCGAATGAACTTTA
TCGCCTACATGACCAGAGGAGTGAAGAACTGGCGCGGTCGAGAAAAGCGC
TGAcagaaatggaaaaggttCTTGAGCAGAAAGATGAGGCCTTGACCAAA
GCAGAACAAAGACTCACTGCCATGCGCAACACTGCGGAGCGCCTCGATGA
AAATCAGCTCATTCAAAGCCTGCGTGACCAGAATCTTCTCTTCAACCACC
TGcgatggggagaaggaccggTGCGCGTGTTGCTGGAGCTAGGAGGCAGC
CCAGGCacggtcgaggaggcggaggaagtggagtTCGAGTTAGCGCCGTT
CGAACTGCTTCCACACGTGACACATTGGTTCTTGACCCTGGTTGAGACTG
GCTTTTGGGATGGCTGCCACTTGATTCGGAACGCTCCGCATGTCCTGCAA
TTCAACTGTCGAGGGCGTACTGCAGTATCAGGgaacccctcccttcttgc
ccgcGTCCCTGGCGCCGAGCACGGGCGAATCACTGGTCGCAAGAGCATTG
TTTTCCAGGAATTTGCCCCGGATTTCAACCACTTGCCTTTTACACTGGGC
GTGGCAGGGCGCCCGGGCGGCGAGGACTTTTATGTCAACCTGGTGGATAA
CACAAGGAATCATGGAccgggagggcaagggcccGAGCCCGATCCTTGCT
TcgcggaggtggtgaaaggaaaggacgtTCTGGAGAAAGTGCATCAAAAG
TTGACAACTGGGttcttgaaggaggaggattttgTGTTGATTCGTAGGAT
GCTGAtaaaaggggaggagaagggaactTAGCACGGGGCGAAAATAAGTC
CTTCGCATCCACACATCCCTTGACTACGAAGCACGAGGGCATTTCATCGG
TTGTAAAATAAGAGAGAACAGAAGTCGTGGAAACCTACGTCTCGGGTGTG
CGCCACCTTGTTTTCAGGACACTTATAAACTGCACCTCTCGATTTACACT
ACGCTGCGAGACAGCGTCTATGGCCATCTCGCGCCATTCGTTCTCTCCTC
TCATGTGTTCTTCCAAGCCACCCGTCCCCATCTACGCGTGACGGGAGTAT
GCAAAGGCACATTGGTTGATCCTCATGTGGCTTCTGCCCCATTCATATGA
ATCTGAATGAATGAGACTTCCAATTTTTTTAATAAACTAAGTGGTTATTG
GTGACATATCATCGGGAGAATAAAAGGACCAAAAATAAGTCCCATTCCTT
CCATAAAAGGCCTCAGTTT
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Coding sequence (CDS) from alignment at CM002455.1:222173..223841+

>rna80 ID=rna80|Name=rna80|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002455.1:222173..223841+ (Nannochloropsis gaditana)
ATGGACGGAGGCAGCCGAGCAAGCCATCGCGTTCATGGACCAACTACTAG
CACTCCTGAATACAAAGTCAAGCATAATAAATCAAGTCATGTACGCGGCA
TTTTATTGAATAGTCGAGCTCTTAAACTCTTGCTCTTTTTTCTAGGCTTC
TTGTATGTAGGAGTCATCTTCTACTGTCGTTCCTTACTGCACGAGCGGGA
CGATGCATTTAAGAGCGAGAAATTGAAGTGGTCGAATGAACTTTATCGCC
TACATGACCAGAGGAGTGAAGAACTGGCGCGGTCGAGAAAAGCGCTGAca
gaaatggaaaaggttCTTGAGCAGAAAGATGAGGCCTTGACCAAAGCAGA
ACAAAGACTCACTGCCATGCGCAACACTGCGGAGCGCCTCGATGAAAATC
AGCTCATTCAAAGCCTGCGTGACCAGAATCTTCTCTTCAACCACCTGcga
tggggagaaggaccggTGCGCGTGTTGCTGGAGCTAGGAGGCAGCCCAGG
CacggtcgaggaggcggaggaagtggagtTCGAGTTAGCGCCGTTCGAAC
TGCTTCCACACGTGACACATTGGTTCTTGACCCTGGTTGAGACTGGCTTT
TGGGATGGCTGCCACTTGATTCGGAACGCTCCGCATGTCCTGCAATTCAA
CTGTCGAGGGCGTACTGCAGTATCAGGgaacccctcccttcttgcccgcG
TCCCTGGCGCCGAGCACGGGCGAATCACTGGTCGCAAGAGCATTGTTTTC
CAGGAATTTGCCCCGGATTTCAACCACTTGCCTTTTACACTGGGCGTGGC
AGGGCGCCCGGGCGGCGAGGACTTTTATGTCAACCTGGTGGATAACACAA
GGAATCATGGAccgggagggcaagggcccGAGCCCGATCCTTGCTTcgcg
gaggtggtgaaaggaaaggacgtTCTGGAGAAAGTGCATCAAAAGTTGAC
AACTGGGttcttgaaggaggaggattttgTGTTGATTCGTAGGATGCTGA
taaaaggggaggagaagggaactTAG
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Synonyms
Publications