EWM30557.1, cds80 (CDS) Nannochloropsis gaditana

Overview
NameEWM30557.1
Unique Namecds80
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:222378..223403 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30557.1
ProductCyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein
Orig transcript idgnl|cribi|Naga_100033g4.8396.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:222378..223403 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
IPR029000Cyclophilin-like_dom
Homology
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|585113224|gb|EWM30557.1| (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0
Query:    1 MDGGSRASHRVHGPTTSTPEYKVKHNKSSHVRGILLNSRALKLLLFFLGFLYVGVIFYCRSLLHERDDAFKSEKLKWSNELYRLHDQRSEELARSRKALTEMEKVLEQKDEALTKAEQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRWGEGPVRVLLELGGSPGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGPEPDPCFAEVVKGKDVLEKVHQKLTTGFLKEEDFVLIRRMLIKGEEKGT 341
            MDGGSRASHRVHGPTTSTPEYKVKHNKSSHVRGILLNSRALKLLLFFLGFLYVGVIFYCRSLLHERDDAFKSEKLKWSNELYRLHDQRSEELARSRKALTEMEKVLEQKDEALTKAEQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRWGEGPVRVLLELGGSPGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGPEPDPCFAEVVKGKDVLEKVHQKLTTGFLKEEDFVLIRRMLIKGEEKGT
Sbjct:    1 MDGGSRASHRVHGPTTSTPEYKVKHNKSSHVRGILLNSRALKLLLFFLGFLYVGVIFYCRSLLHERDDAFKSEKLKWSNELYRLHDQRSEELARSRKALTEMEKVLEQKDEALTKAEQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRWGEGPVRVLLELGGSPGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGPEPDPCFAEVVKGKDVLEKVHQKLTTGFLKEEDFVLIRRMLIKGEEKGT 341          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|569425319|gb|ETO30840.1| (hypothetical protein RFI_06276 [Reticulomyxa filosa])

HSP 1 Score: 159.458 bits (402), Expect = 7.746e-40
Identity = 94/302 (31.13%), Postives = 146/302 (48.34%), Query Frame = 0
Query:   48 LGFLYVGVIFYCRSLLHERDDAFKSEKLKWSNELYRLHDQRSEELARSRKALTEMEKVLEQKDEALTKAEQRLTAMRNTAERLDENQ---------------------LIQSLRDQNLLFNHLRW------GEGPVRVLLELGGSPGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRT-AVSGNPSLLARVPGAE---------HGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGPEPDPCFAEVVKGKDVLEKV 312
            +G L    I+Y  S     + A  ++K   +     L+ Q   E+ +    +  +   L+QK+  + +  + +  + +    L +N                      L  SL   ++  + L++      GE  V++    G           +E E+APF ++PH T +FL ++ +GFW+GCH  RNA HV+Q NC  R  A S     +     A+         +GR     SI FQE++ ++ H PFT+G+AGRPGG DFY+NLVDN RNHGPGGQ  E DPCF ++VKG +V+  +
Sbjct:  494 IGALLTTSIYYTHS---NDNSAMANDKANENGSGANLYVQNKNEVRQLSLKMEAITAALKQKESEVQRNLETIRQLTDEVNELRQNSKDNGNEDEAHDEADSNKRLHALFSSLAKTDMYLSELQYHTLNPNGEVTVQINTRFGI----------IEIEMAPFNIMPHTTRYFLQMIASGFWNGCHFFRNANHVIQANCHHRCVACSFQMCCVVCKENAQAKVFFWIGTNGRHEYEPSISFQEYSEEYVHKPFTVGIAGRPGGPDFYINLVDNIRNHGPGGQDGEADPCFGKIVKGMEVIHHI 782          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|1210530786|dbj|GAX10737.1| (hypothetical protein FisN_14Lh256 [Fistulifera solaris])

HSP 1 Score: 143.28 bits (360), Expect = 3.617e-36
Identity = 87/258 (33.72%), Postives = 138/258 (53.49%), Query Frame = 0
Query:   98 ALTEMEKVLEQKDEALTKA-----------EQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRWGEGPVRVLLELGGSP-----GTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGP-----EPDPCFAEVVKGKDVLEKVHQKLTT--GFLKEEDFVLIRRM 332
            AL+E +  LE+K +A T A           ++R+  +    +++ +N  +Q    + LL    ++G GP  V++E+   P     G   + + +  ELA  E +PH   WFL  V+   +DGC   RNA HV+Q           N  L+      +H + +G +S++FQE++    H+ +TLG AGRPGG DFY+++ DNTRNHGPGGQG      E DPCFA+VV+G  V +++H+       + + + +V I+ M
Sbjct:   84 ALSEEKANLERKLQASTPAAAGNMPTTEAMQKRIDNLLKFKQKMKDN--LQKWSKERLL---AKYGPGPHYVVMEVAFDPSSNIYGDGPDTDHITIELASEEDMPHTVLWFLDQVDRRLYDGCSFHRNAGHVIQGGPAPNFLTPPNAGLV------KHFKESGVESVLFQEYSEKHPHVKYTLGYAGRPGGPDFYISMQDNTRNHGPGGQGSYEDPTEADPCFAKVVQGFAVADRIHKSAVQEGSYKRMQHYVAIKTM 330          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|1210517651|dbj|GAX23566.1| (hypothetical protein FisN_14Hh256 [Fistulifera solaris])

HSP 1 Score: 141.354 bits (355), Expect = 1.360e-35
Identity = 86/256 (33.59%), Postives = 137/256 (53.52%), Query Frame = 0
Query:   98 ALTEMEKVLEQKDEALTKA---------EQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRWGEGPVRVLLELGGSP-----GTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGP-----EPDPCFAEVVKGKDVLEKVHQKLTT--GFLKEEDFVLIRRM 332
            AL+E +  LE+K +A   A         ++R+  +    +++ +N  +Q    + LL    ++G GP  V +E+   P     G   + + +  ELA  E +PH   WFL  V+   +DGC   RNA HV+Q           N  L+      +H + +G +S++FQE++  + H+ +TLG AGRPGG DFY+++ DNTRNHGPGGQG      E DPCFA+VV+G  V +++H+       + + + +V I+ M
Sbjct:   84 ALSEEKANLERKLQAPVVAGNTPSTEAMQKRIDNLLKFKQKMKDN--LQKWSKERLL---AKYGAGPHYVDIEVAFDPSSNIYGDGPDTDHITIELASEEDMPHTVLWFLDQVDRRLYDGCSFHRNAGHVIQGGPAPNFLTPPNAGLV------KHFKESGVESVLFQEYSEKYPHVKYTLGYAGRPGGPDFYISMQDNTRNHGPGGQGSYEDPTEADPCFAKVVQGFAVADRIHKSAVQEGSYKRMQHYVAIKTM 328          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|1072237187|gb|OEU21914.1| (hypothetical protein FRACYDRAFT_232060 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 136.732 bits (343), Expect = 5.115e-33
Identity = 91/274 (33.21%), Postives = 139/274 (50.73%), Query Frame = 0
Query:   80 ELYRLHDQRSEELARSRKALTEMEKVLEQ----KDEALTKAEQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRWGEGP--VRVLLELGGSPGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQG-----PEPDPCFAEVVKGKDVLEKVHQKLTTG--FLKEEDFVLIRRMLIKGEEKG 340
            EL  L+ Q  +E  R    + ++ K L+Q    + E L +     T  +   +++ EN  IQ +    L+    R+G GP  V ++++     G  ++   +  ELAP E +PH  +WFL  V+   +DGC   RNA HV+Q           +P L  R   A      G   I+FQE++P+  H+ F+LG +GRPGG DFY+++ DN++ HGPGGQ       E D CFA+VV G DV+E++H+  T    +   E  + I  M I  +  G
Sbjct:  186 ELIILNQQLKDEKNRLEFQMKDVSKELQQHYEGQIEILNRHNDHFTTYK---KKMQEN--IQLMSRSALI---ERYGLGPHFVEMIVQFDSHMGRDDQGSII-VELAPVEDMPHAVYWFLEQVQRKLYDGCSFHRNAAHVIQAGPASNFLSPPDPQLSKRFKDA------GFDKILFQEYSPNSPHVKFSLGYSGRPGGPDFYISMQDNSKIHGPGGQNNFEDPEEADTCFAKVVNGFDVVERIHKSPTKKGEYHAMESNIAIVSMTIMKKNDG 444          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|1210513093|dbj|GAX27909.1| (hypothetical protein FisN_21Hh259 [Fistulifera solaris])

HSP 1 Score: 118.242 bits (295), Expect = 4.854e-26
Identity = 85/264 (32.20%), Postives = 125/264 (47.35%), Query Frame = 0
Query:   62 LLHERDDAFKSEKLKWSNELYRLHDQRSEELARSRKALTEMEKVLEQKDEALTKAE--QRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRWGEGPVRVLLELGGS-PGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGPE-----PDPCFAEVVKGKDVLEKVHQKLT 317
            + +E   A + +  K  NEL  + D        S +A  E+++++ +++  +   E  Q+ T  R +A  + E                 ++G GP +V  E G   PG V+E   V  ELAP  ++PH TH FL  V  G WD      N PH++Q   +        P    R       +    +S+ F E++ D+ H P+TLG  GRPGG DFY+N VDN+  HGPGGQ         DPCF +V+KG D LE + +  T
Sbjct:  198 IANEHKIALERDNRKLQNELKEMKDHY-----ESPEAHEELDRIIAREEGWIKHVEVLQKRT-QRESARSVQE-----------------KFGHGPYQV--EFGVLLPGQVDENYFV-IELAPLSVMPHATHIFLEQVSHGLWDKAWFYINGPHIMQVGPQPDGMTEEMPLEELRELALRPFKEKALESLAFPEYSDDYAHEPWTLGFTGRPGGPDFYINKVDNSEAHGPGGQYQHDLEEFADPCFGKVIKGFDTLENIARTQT 435          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|397568509|gb|EJK46173.1| (hypothetical protein THAOC_35172 [Thalassiosira oceanica])

HSP 1 Score: 118.627 bits (296), Expect = 6.245e-26
Identity = 83/236 (35.17%), Postives = 120/236 (50.85%), Query Frame = 0
Query:  101 EMEKVLEQKDEALTKAEQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRW-GEGPVRVLLELG------GSPGTVEEAEEV----EFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGR-KSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQG-----PEPDPCFAEVVKGKDVLEKVHQKLTTG 319
            E+EK +E  DE     + R  A+ +  + L E+   +S R+       L W G GP  V LE+         P   ++   V    E ELAP + +P   + FL  V    WDGC  + NA H+LQ     R A   +    A +P      + G+   + FQE++ DF H  +TLG AGRPGG DFYVN +DN+ NHGPGGQG      E DP F  +V+G ++++++++  T G
Sbjct:  281 EIEK-MESLDEYEEYVQMREDALWDKIDALVESMSAESRREA------LEWFGPGPHHVQLEIEYPRWSEDGPSEPDDWPRVRGVLEIELAPIQAMPIAVNLFLQQVHHKLWDGCVFVINAMHILQAGPH-RFAPDNDGYYDANIPELMDRFVDGKLDKMPFQEYSKDFPHEQYTLGFAGRPGGPDFYVNKIDNSVNHGPGGQGHHDLHVEADPSFGRIVRGVEIIQELNRIPTDG 508          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|1210516472|dbj|GAX24639.1| (hypothetical protein FisN_21Lh259 [Fistulifera solaris])

HSP 1 Score: 117.857 bits (294), Expect = 7.649e-26
Identity = 69/174 (39.66%), Postives = 91/174 (52.30%), Query Frame = 0
Query:  150 RWGEGPVRVLLELGGS-PGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLARVPGAEHGRITGRKSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQGPE-----PDPCFAEVVKGKDVLEKVHQKLT 317
            ++G GP +V  E G   PG V+E   V  ELAP  ++PH TH FL  V  G WD      N PH++Q   +        P    R       +    +S+ F E++ D+ H P+TLG  GRPGG DFY+N VDN+  HGPGGQ         DPCF +V+KG D LE + +  T
Sbjct:  268 KFGHGPYQV--EFGVLLPGQVDENYFV-IELAPLSVMPHATHIFLEQVSHGLWDKAWFYINGPHIMQVGPQPDGMTEEMPLEELRELALRPFKEKALESLAFPEYSDDYAHEPWTLGFTGRPGGPDFYINKVDNSEAHGPGGQYQHDLEEFADPCFGKVIKGFDTLENIAKTQT 438          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|223993599|ref|XP_002286483.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977798|gb|EED96124.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 111.694 bits (278), Expect = 2.101e-23
Identity = 72/211 (34.12%), Postives = 108/211 (51.18%), Query Frame = 0
Query:  150 RWGEGP--VRVLLELGGSPGTVEEAEEVEFELAPFELLPHVTHWFLTLVETGFWD--GCHLIRNAPHVLQ---FNCRGRTAVSGNPSLLARVPGAEHGRI--TGRKSIVFQEFAPDFNHLPFTLGVAGRP-GGEDFYVNLVDNTRNHGPGGQGP--------------------------EPDPCFAEVVKGKDVLEKVHQKLTTGFLKEE 324
            R+G GP  V ++++L        E+ E+  ELAP +L+PH  H FL+ +E G+W      ++ NA HVLQ     C    ++ GN       PG  +  +   G  S+ FQE+ P + H  +T+G+AGRP  G +FY+NL++NT +HG   Q                            EPDPCF +VVKG DV++K+ +++T   L EE
Sbjct:  436 RFGAGPHLVSIIVDLDDEQS---ESNEIVLELAPLDLMPHTIHLFLSQIEEGYWSRGTPAIVINAGHVLQACPHPCLESVSLGGN------YPGDPYHDMKHAGLDSVSFQEYHPSYPHEKYTIGLAGRPHSGPEFYINLLNNTLDHGTVEQRKQELGDGYADYLKAAMEGEDGLDEKVMEPDPCFGKVVKGFDVVDKIAERITRASLPEE 637          
BLAST of EWM30557.1 vs. NCBI_GenBank
Match: gi|397643900|gb|EJK76147.1| (hypothetical protein THAOC_02105 [Thalassiosira oceanica])

HSP 1 Score: 108.612 bits (270), Expect = 1.917e-22
Identity = 73/258 (28.29%), Postives = 126/258 (48.84%), Query Frame = 0
Query:   86 DQRSEELARSRKALTEMEKVLEQKDEALTKAEQRLTAMRNTAERLDENQLIQSLRDQNLLFNHLRWGEGP--VRVLLELGGSPGT---------VEEAEEVEFELAPFELLPHVTHWFLTLVETGFWDGCHLIRNAPHVLQFNCRGRTAVSGNPSLLA-RVPGAEHGRITGR-----------KSIVFQEFAPDFNHLPFTLGVAGRPGGEDFYVNLVDNTRNHGPGGQG------PEPDPCFAEV--VKGKDVLEKV 312
            D    EL    +   + + ++E KDE     ++R  A+    + L++     S R+    F     G GP  V + +E   +P           + +A+ +  +LAP +++PH  + FL  V  G W+GCH+ +N+ H++QF          +P+ +  R P  +     G+             + +QE++ D+ H+ +T+G+AGRP G DFY+N +DN+  HGPGGQ        E DPCF +V  VK  ++L+++
Sbjct:  251 DHAKNELEDRIEDTAKYKAMVEGKDEVEQYMKKREEALWKRIDVLEKRVGQNSWREAEEWF-----GSGPHKVELTIEYPKAPSADNTDASTWPMTQAKLI-IDLAPLDMMPHTVNLFLQQVHHGLWEGCHVSKNSNHIVQFGPS--YDDKDHPAFIEERRPQHDGENFEGKTHYSYFYDYSLDKVTYQEYSKDYPHIQYTVGMAGRPSGPDFYINKIDNSMIHGPGGQTNRDDFHNEADPCFGKVIDVKSLEILKEI 500          
The following BLAST results are available for this feature:
BLAST of EWM30557.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113224|gb|EWM30557.1|0.000e+0100.00Cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
gi|569425319|gb|ETO30840.1|7.746e-4031.13hypothetical protein RFI_06276 [Reticulomyxa filos... [more]
gi|1210530786|dbj|GAX10737.1|3.617e-3633.72hypothetical protein FisN_14Lh256 [Fistulifera sol... [more]
gi|1210517651|dbj|GAX23566.1|1.360e-3533.59hypothetical protein FisN_14Hh256 [Fistulifera sol... [more]
gi|1072237187|gb|OEU21914.1|5.115e-3333.21hypothetical protein FRACYDRAFT_232060 [Fragilario... [more]
gi|1210513093|dbj|GAX27909.1|4.854e-2632.20hypothetical protein FisN_21Hh259 [Fistulifera sol... [more]
gi|397568509|gb|EJK46173.1|6.245e-2635.17hypothetical protein THAOC_35172 [Thalassiosira oc... [more]
gi|1210516472|dbj|GAX24639.1|7.649e-2639.66hypothetical protein FisN_21Lh259 [Fistulifera sol... [more]
gi|223993599|ref|XP_002286483.1|2.101e-2334.12predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397643900|gb|EJK76147.1|1.917e-2228.29hypothetical protein THAOC_02105 [Thalassiosira oc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna80rna80Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications