rna8, rna8 (mRNA) Nannochloropsis gaditana

Overview
Namerna8
Unique Namerna8
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2848
Alignment locationCM002455.1:23023..24565 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100091g8.5718.mrna
Orig protein idgnl|cribi|Naga_100091g8.5718
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:23023..24565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100091g8gene8Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8rna8-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30669.1cds8Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8 ID=rna8|Name=rna8|organism=Nannochloropsis gaditana|type=mRNA|length=2848bp
TTTCACGGAGGGGGTAACATGGGTCATGTAGTCCATGCTTGTGAACGCTC
CTACAATATTACACTAATTGCCTGCGGTACTACGCCGACAAAATCGAAAT
CCAACAGATGTGAGGAGAGATTTTTCACCCTGCCCGCTAATTTCTCTCCA
CACGAACCCAACCTGAAAACAGGCCAATGCGTTTCTCGGGAACTGTCTTG
GATATGTCAAACATGATGATAGGACAGACAGTCAGCCGCGTAAAAGCCCT
TCAGAGGAGTATAGCAAATTCATCTTCATTTATTTTACGGCTGTAAAGAC
TTTTGAAACACATCCGCCGACATGTCAGCCCCTCTGTCACCCTCTTTGCT
CCCCCCTCGAGGCCTGGTGTCTGAAGAGGAGGTCCAGGCATGGGCAACGT
TCGTGGCAGGCAGCTTTGCCTTTAAGAAACCCGTTCCACCCACTCGAGAT
CACTTCCTGCGACACTTTCGTAATGACCCGTATTCGCATGACAAGGCATG
TATTCGAGTTATCATGGAGGATGACGCGCAAAATGAAATAGTGGGCTCAG
CACGCCTAGTGTTGCGGCCCCTTTCTACGGGAGGATGGGCGGCAGGGGTT
GCTGAAGTCTGCGTCGCACCACGGCAGCGAGGGAAAGGCTTAGCCCAGCG
TCTTGTTCAAAATGTGCTGGCCACAGCGGCATCTTTGGTATCTCCTAAAC
CCAGTCTGAGCATGTTGCATTGTTCTCCATCGTTAGTTTCGATGTACGCC
GGGATGGGATATGTACCGGTGTCCACACGATGGGTGCATGTCTGGTTGAA
AAGCACGCTGATGGAGCAGGCCGAGGGCGTTAGCGTGCAGTGCTTGGATT
TCGATGCGAGCAACAGCGCGGAGGTGCTCCAAGAAATGGCTGTCCTCCCA
TCTGCAGTCGTTGAAGTCATTGCACGGGACGTTCCTTACTTCCTTGCGTG
GACTAGAAACGAGGTCCTGGCGGCACCTCACACGGACGTTTGGGGCGTAC
GGGCGAAAAGCGGAAAGCTGCTTGCATACTGCTCTTTGCGGCGTCGAGTC
GACGGCTCCATGATGCTGGTGGATATGCGCGTCTCTGTCGGCGAGGGCAT
CGTAGCCATCATCCGCGACGTAATCAACGCAGTCGCAAAATCTTCCGCTA
CATCGACTCTTGATGGTGCGTCTTCTACGGACGAAATAGAGCTGTGCATA
CCTGCTGTTCTCGTCGAGAAGGATGCTATGACAGGCTTGTGCGTCGAGGA
AGGGGAGACGGATCCAGGATGGATGTACAAGCCCCTTGCAGACAAGCTAA
CTTCTGAGGAATGGCAAACGTTCATAGCGCGGTACAGAGCTCAGGAGGGA
GCTAACGTTGCACACTTGGTCTGGCCAATAGACCATTTTTGAACGTGATG
ACATGTGAAGTCGACTGTAAAAATTAAACAAACTGTGTGACTTTGCCCCA
CGTTCGATGTCGTAATTTTGAAGGGCAATGTGGTTCCGTATATAGCAGCT
CATACGACTTATTTCGCTGAAAATGTGAGTGCATATGGCCTCTGTCCCCC
TGCTGCCGCTCAACAACCTGCCACATCTCACCAGTCTGCCCCCTCCATGC
ATCGTATGCCTCTTGTTGTTTGGAGGACTTGCAAAGCGTTGCGACCTCGT
GCACGAATGGCTCGGTTCTGATCGAGGAAGATGTTGAGGAGCTTGGGGCA
GTACAATCCAATCTTTTCCTCCTCCGTTCGCCCGCCCCCCATGCCAGACT
CATGCTCTCCAGCGCAGGCTAAAAAGTCCCTGAATGCACAAGCTCCATCA
TCACCGATCCTATTCTCCTTCAAATCTAAAGTTTCTAGGAGCAATCTTGG
ACGAACGTGACTTATCCTCTCTTCGTCACGGCCTCCATCTGACAGATGCA
TGGCGAAGGCGAGTGCCCCTTCGTTTCCTATGGCGTTGGACGCTAAGTCT
AGCTCCCGCAGAACCACCATGCCCTCCAAACAGCCAGCTACGGCTCTTGC
TCCTGCGTCTCCAATCTTATTATAGCCTAGGTACAATTCGTCCAGACACG
GCATCCCTCCACCGGCAGATATCCCTTCCGCCAATGAGGCCACGCCCCGA
TCACCTAATCGATTCAAGTGCAAATCTAGTTTTCGCAACCGTTTAAGAGC
TGGGGCTGCGAGGGCATCGCCGATGTACATAGCCGACAAGTGCCCCAGAT
TGTTTTGTGCGAGGCTCAGGGACGTCAAGAGAGCGCTAGGCACACCTGTT
TTCAACACCTGGCAAAGAACACCTACAGAATCTCGAGCGCCCCCGACAGC
GAGCCTGCCTATCGCTTCGTCTATTGCCATGCCAACATCGTCGTCACTAT
CACACGTAATTTGATTGGCCCGAATGTAGATACCTCGTAGGTGAGAATGA
AAGCCTCCTTGTCCGAGTGCCTCGGCCAAAGCAAGACAGCCCTCACTTCC
GAGATTGTTATCCCATAAACTCAGAGACGATACGCACTGAAATACACCAT
TTACTGCAGCAAGCCTTCCTAAAGTAAGCAGGATACTAGGAGTGAGTTCT
GCTGAAGAGAGATCCAGAATTTGGAGTGCTCGACAGGGCGGTAGATGACG
GGCAATTAGGTCCTCTACTACAGCCGCAGGAAGAGGCTTGGTGGGCCGAA
AAAATGACAGTCCATTGCCCACAAGATTGCTTCTGCCATTTCCGTCCTTG
AAAGCTAGATTACGGGCCGTGCTGACCAAGTATGAAATGTCTCTTGGCCA
AAGATAGGCACAAAGTTCATAAAGAACAGCAGCGGGCAGATTTGGCAATG
TCGTTGCAGTTATTTGCCCACTCTCTCGGCCAATGTCACGTTCTTTCA
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protein sequence of rna8

>rna8-protein ID=rna8-protein|Name=rna8|organism=Nannochloropsis gaditana|type=polypeptide|length=340bp
MLAVAGATMGTLVMSAQSEAVCSNPACEAAYEHVRNGRPFPIAFAAIARA
LRRGHVVVIDPVMSDQELLAAQNDVKALLRQGDGAFAVNANDDSSVRLDS
VTWVTGEEAGTGPGLKHAVALLKGLAHEFSRTPEYSKSVLFVQSAAQLAC
YAGDGQAFYAPHLDASTESVWTLGLNAWLRARAYRERTITAILYLNDKDW
DADLSGGCLRCYLPSALAQGGMHDKPSGLGELPATTTSGSRRISQDRSKP
KAHAYEICGDHGITALPVSLESDRAKSDDKVSGSLGVMPRDVAPRGGRLV
LFDSGAVLHEVLPSYKKGGQRIALTVWVSDRQSREFVQNK
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mRNA from alignment at CM002455.1:23023..24565+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8 ID=rna8|Name=rna8|organism=Nannochloropsis gaditana|type=mRNA|length=1543bp|location=Sequence derived from alignment at CM002455.1:23023..24565+ (Nannochloropsis gaditana)
GATTAGTGCGCGGAATGTGGGAACAGGAAGAAACAGCAAGTGGATTAATT
ATATTCCTATGGCAATTCATTGCACGTCAAAACCCGCCACGTACCATGCT
TTCGCCGTCGTCGTTCTTGCTCGCCGATTCACGTCGGAACGCTAATAACC
GCACGAATGTTCAATAACCACTTGACACCGTTCAAAATTCGTGAACTTAA
AAGTATAAATACATCATAAATCGTAGATGCTTCTTGCTTCCGTCCGCCGC
GCCACCTCAAAGCATGTACGTTCCCCTCATAAGATGCTGAGCATCCTACC
GTGACGCCTAATTTGCCAACATGAAAAACTCTTTTCACCCCACATTCAAA
GACCAAAGAATAAGTAGATACATTTAAAATACTTTTTTCCTATGATCTAT
ATGTACATTTTTATTTGAACACTTACCCAACACTTTCCTTTGTTATTTAT
CTGCACGACTCTCCTCTCGTTATTTTGTTTTTTGCAGGGAGCCGAGGCTG
CCGCCATGCTGGCAGTTGCCGGTGCGACCATGGGGACGCTCGTGATGTCC
GCTCAGAGCGAAGCAGTGTGCTCCAATCCAGCATGTGAGGCAGCTTACGA
GCATGTGCGCAATGGACGGCCCTTTCCCATTGCGTTTGCTGCCATAGCAC
GCGCCCTTCGGAGGGGGCACGTAGTAGTTATAGATCCGGTAATGAGCGAT
CAGGAGCTTCTCGCCGCCCAAAATGATGTCAAGGCCTTACTACGACAAGG
TGATGGTGCGTTTGCAGTGAACGCAAATGACGACAGCAGCGTGCGGCTTG
ACTCCGTTACATGGGtgacaggggaagaggcggggacTGGTCCGGGCCTG
AAGCACGCAGTGGCCTTGTTGAAAGGTCTGGCGCATGAATTCTCAAGGAC
CCCCGAGTACAGTAAGAGTGTCTTATTTGTGCAGTCTGCGGCGCAACTAG
CGTGCTATGCTGGGGACGGCCAAGCTTTTTATGCACCGCACCTGGATGCT
TCTACAGAGAGTGTATGGACACTGGGACTTAATGCTTGGCTCCGTGCGCG
CGCCTACCGTGAGAGAACGATCACGGCTATTCTTTACTTGAATGACAAAG
ATTGGGATGCAGATCTGTCTGGTGGATGTTTGCGATGCTATCTGCCTTCC
GCTCTTGCCCAGGGAGGGATGCATGACAAGCCTAGCGGTCTTGGCGAGCT
TCCTGCGACAACTACCTCTGGCTCAAGAAGGATAAGTCAAGACAGAAGTA
AACCCAAAGCCCATGCCTACGAGATATGTGGAGACCATGGCATTACTGCA
CTACCGGTCTCTTTAGAATCAGATCGGGCAAAGAGCGACGACAAGGTGAG
CGGGTCTCTCGGCGTTATGCCGCGAGACGTGGCGCCACGGGGGGGGCGTC
TGGTCCTCTTCGACAGCGGAGCTGTCCTCCACGAGGTCCTACCCTCTTAT
AAAAAGGGTGGACAGCGCATAGCTTTGACTGTGTGGGTGAGCGACCGACA
AAGCCGAGAATTCGTTCAAAATAAATAAAATCCGGACTTGCCT
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Coding sequence (CDS) from alignment at CM002455.1:23023..24565+

>rna8 ID=rna8|Name=rna8|organism=Nannochloropsis gaditana|type=CDS|length=1023bp|location=Sequence derived from alignment at CM002455.1:23023..24565+ (Nannochloropsis gaditana)
ATGCTGGCAGTTGCCGGTGCGACCATGGGGACGCTCGTGATGTCCGCTCA
GAGCGAAGCAGTGTGCTCCAATCCAGCATGTGAGGCAGCTTACGAGCATG
TGCGCAATGGACGGCCCTTTCCCATTGCGTTTGCTGCCATAGCACGCGCC
CTTCGGAGGGGGCACGTAGTAGTTATAGATCCGGTAATGAGCGATCAGGA
GCTTCTCGCCGCCCAAAATGATGTCAAGGCCTTACTACGACAAGGTGATG
GTGCGTTTGCAGTGAACGCAAATGACGACAGCAGCGTGCGGCTTGACTCC
GTTACATGGGtgacaggggaagaggcggggacTGGTCCGGGCCTGAAGCA
CGCAGTGGCCTTGTTGAAAGGTCTGGCGCATGAATTCTCAAGGACCCCCG
AGTACAGTAAGAGTGTCTTATTTGTGCAGTCTGCGGCGCAACTAGCGTGC
TATGCTGGGGACGGCCAAGCTTTTTATGCACCGCACCTGGATGCTTCTAC
AGAGAGTGTATGGACACTGGGACTTAATGCTTGGCTCCGTGCGCGCGCCT
ACCGTGAGAGAACGATCACGGCTATTCTTTACTTGAATGACAAAGATTGG
GATGCAGATCTGTCTGGTGGATGTTTGCGATGCTATCTGCCTTCCGCTCT
TGCCCAGGGAGGGATGCATGACAAGCCTAGCGGTCTTGGCGAGCTTCCTG
CGACAACTACCTCTGGCTCAAGAAGGATAAGTCAAGACAGAAGTAAACCC
AAAGCCCATGCCTACGAGATATGTGGAGACCATGGCATTACTGCACTACC
GGTCTCTTTAGAATCAGATCGGGCAAAGAGCGACGACAAGGTGAGCGGGT
CTCTCGGCGTTATGCCGCGAGACGTGGCGCCACGGGGGGGGCGTCTGGTC
CTCTTCGACAGCGGAGCTGTCCTCCACGAGGTCCTACCCTCTTATAAAAA
GGGTGGACAGCGCATAGCTTTGACTGTGTGGGTGAGCGACCGACAAAGCC
GAGAATTCGTTCAAAATAAATAA
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Synonyms
Publications