rna7997, rna7997 (mRNA) Nannochloropsis gaditana

Overview
Namerna7997
Unique Namerna7997
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1698
Alignment locationKK037247.1:316379..317721 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100340g7.5993.mrna
Orig protein idgnl|cribi|Naga_100340g7.5993
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:316379..317721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100340g7gene7743Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7997rna7997-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22697.1cds7975Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7997 ID=rna7997|Name=rna7997|organism=Nannochloropsis gaditana|type=mRNA|length=1698bp
ATGGCCTGCTCCAGCACGTCGTCCACCCCTAGACTGTCCTCCTCGACATT
TGTCACGCCCTTTGACTCCTCGTCGCGGGTAGAGGGCGTCGGACGCTCCC
ATCAAAGCACCGAGCTCCTTGCCAGGCGCGTGTCCGGTGTGCGCATCGAC
CTTTCTCCCCCTTCCCCGCCCATCTCTTCCTCCACGCGCCCAGGCGACGG
GATGTCGCCCCTTTTATCCAACGCCCAATCGTTCCAAAACCAGTTGCACC
GTCATTCTCGGCAATCCTCAACATGCAGCGGCAACGACACCCTCTCGGCC
TCCTCCTCCTCTACCTCCTCCTCCTCCTCGCCCTTTCCGGCCCTTCTCAA
GGCCTTCAACCCCCAAGAGGTACAGGTGGAGGTGGAGTGCGAACCTGCGG
CCATCGGAGACAGGGTCCTCCTCCGCAGCATCATCATCCACAACATGTCG
AAGCTCGACCTGGACGACTCCCTCACGCTCACTGCGGAGCCCAACGACCT
CTGCTTTCTGGAGCGCGTCCTGGTCGGCAGTCTGGCCAGAGGGCAACGCA
AGGTCGTCCCACTCCAGCTCCGGGTCAGGAGCTCACTGACCATGCCCTAC
GAGGACGCGATCCCAGAGAGATATGTCCTCACCCTCAGCCACGCCTCTCC
TTCCTCTCTCCCGCCTTCTTCCGCCTCCTCCCCGCCCCCCGACCTGGAGA
TCCGCTACAGCTTCGAGAACTCCTTCCGGTACTTCCTCAAGGGCCTCCCG
GGCCTGGCCCCTCGACGTGTGGTCAGCCTTCCCTGTCCGTCACCGCCCTC
GCGCCCCCCGTCCTCCCCCCCTGCCCGGCGCCGCCTCCCCGCGCCCTGCA
ACCTCGTGCTGGTGGGTCCTGCCGGCGCGGGGAAGTCCACCCTGCTCGCC
CACCTCCTCACGCTCGTCAGCGAGCGGGAGCACGTCAATTTGGGCGGTGT
GCGGACCTGCGCCACCTCCTCGCACGGGACCTTGGAGCTCCGCGCCTACC
CCCTGCACCCGACCGTCTCGGCGGTCTCCGTTTGGGACACCCGTGGCTTC
ACACCCAGCACCTACACGTGCGAAGAGCTCGCCAATATTTTGGCGGGCGA
CTACCCGGAGCGGCGGTGGGACCCGGTGGGGCGGGACGCGGGGAGGGAGG
CGGAGGTGCGGGAAGAGGGGGGGGCGACCCGAGCCCTGCGGGAGCAGCAG
GCCTGTGTGGTGGTCCTCCCGGAGGGGATCCTTCAGTCCGCGGTGGAGCT
GGACCAGCTCCGCCGGCAGCTGGAGCTGGTGCAGCGGGCAGGCCTGAACC
CCTTGGTCCTGCTCACCCACGTGGACCTGGCCTACCCCAGCCTGCGGGCG
GACCCGTCGGGGCGTGGGGTGGGGGAGCTGGGGGAGGCGAGGCGGGAGGC
GGCCCGGCAGCTGGGGGTGGAGGCGAACCGCGTCCTGCACATGGTGCCCT
ACAAGGACGAGGAGACCAGGCGCTTCTCCATCGACCGCTTGGTTTACAAG
GTCCTGGCCAAGGCGCTACAGCTGGCTGCCGAGTACGTGGAGTCGCACCC
TGAGGGCGCCCGGGAGGAGGGCCCAGGTCAGGAGGCAGTCCCCTTGCGCT
CCTTGTTCGGCGTCTCCCACGCCTGGCCGGCCTTTCTGGAGGCGGAGGAC
TCTGCCCCGGACGCCCTCCAGCCGTACATGCGGGGGGGGGTGCTCTGA
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protein sequence of rna7997

>rna7997-protein ID=rna7997-protein|Name=rna7997|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MYDLKSPHEHSSCKDFAFHEATYIRMHVLNPTHAAASWRAGVPLAPITMT
APLHSQTQHLTVMSDAEVCDVVEDTFTFRFDKLYDFVRGHVVDTLRKPRL
VLAVGWHEETSTPTGELDVQFQAISVARISFRPHWTAPYLDVSMQTPASR
VFQSAFASLATTAALSTALRNIQALPESLEYTKGAGDVFNGTFDRIRRGL
WDLIDYGKPLLFAGAPLPLVLFVTRKDQGSCSNERK
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mRNA from alignment at KK037247.1:316379..317721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7997 ID=rna7997|Name=rna7997|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp|location=Sequence derived from alignment at KK037247.1:316379..317721+ (Nannochloropsis gaditana)
aaggcatCGTGGGGTGGCGATATAAGTCATTTACGCAATGGTATCTTCAT
GTCTGTAATGTATGCTCGAGTGCATTTGGTTTGAGGGAAAAATTGTCGAG
CCGGCGTGCtcggagagagggaggagcgtcCCCCCCACTTCAACAATACC
TGGTAATAAGACACATTTACACCGCACACTGAAGGCGTTTGGCGGTTCGG
CTGTGAGGATTTAATTTTCGACGATGGTAAACAAAGTTCTTTTTGGACAG
AAAGGATATTTGGTCTGGCCACCGTTCTTTTTTTGAGGATCAATCTCACC
AAGTACGCGCATTATTTGTATCGTTCTGACTCAAGGAGAAGTTCTTATTG
TAATGTATGATTTGAAATCTCCGCATGAGCACTCCTCTTGTAAGGATTTC
GCATTCCATGAAGCTACTTACATCAGGATGCACGTTTTAAACCCAACACA
TGCAGCAGCATCGTGGAGGGCTGGCGTGCCATTGGCCCCAATCACAATGA
ctgctcctctccattcTCAGACTCAGCACCTGACCGTGATGAGCGACGCC
GAAGTTTGCGACGTGGTTGAGGACACATTTACTTTTCGATTCGATAAATT
GTACGACTTCGTGCGCGGGCACGTGGTTGACACCTTGCGGAAGCCGCGGT
TAGTATTGGCTGTAGGATGGCATGAGGAGACCAGCACGCCTACAGGGGAG
TTGGACGTACAATTTCAAGCCATATCCGTGGCGAGAATTTCGTTCCGGTA
AGTAATATATCTttcagaaggagaggatggtatGCGAAGGCAATTTGTTC
ACGGTGGGGAAAGTTATACCATGAGAACATCCCGAACCGAGGACGAAGCT
GTGTATGCTTTAAGTAGATCAGTGTTGGGATTCTCGTATCGGGCACATTG
CTTAGTCCAGGGAATGATCTCACTAAAAATCACCTACACAGCCCTCATTG
GACGGCACCATACTTAGATGTCAGCATGCAGACTCCGGCGTCCCGAGTCT
TTCAATCTGCATTTGCCTCCCTTGCAACTACCGCCGCCTTGTCTACCGCC
CTCCGCAACATTCAAGCCCTACCGGAGTCATTGGAATACACTAAGGGTGC
AGGTGATGTATTCAATGGGACCTTTGACAGAATACGCCGCGGTTTGTGGG
ACCTGATAGACTACGGAAAGCCCCTACTCTTTGCCGGAGCTCCGTTGCCG
CTTGTGCTATTTGTAACAAGAAAGGACCAAGGATCTTGTTCCAATGAGAG
AAAATAAAAATGAATTGGGAGCAAGCTGTTGAATACGTGTATCATGGAAA
GTTTGGAACAAAAATAATTGTGCAGGATGATGGAGTATTAAGT
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Coding sequence (CDS) from alignment at KK037247.1:316379..317721+

>rna7997 ID=rna7997|Name=rna7997|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at KK037247.1:316379..317721+ (Nannochloropsis gaditana)
ATGTATGATTTGAAATCTCCGCATGAGCACTCCTCTTGTAAGGATTTCGC
ATTCCATGAAGCTACTTACATCAGGATGCACGTTTTAAACCCAACACATG
CAGCAGCATCGTGGAGGGCTGGCGTGCCATTGGCCCCAATCACAATGAct
gctcctctccattcTCAGACTCAGCACCTGACCGTGATGAGCGACGCCGA
AGTTTGCGACGTGGTTGAGGACACATTTACTTTTCGATTCGATAAATTGT
ACGACTTCGTGCGCGGGCACGTGGTTGACACCTTGCGGAAGCCGCGGTTA
GTATTGGCTGTAGGATGGCATGAGGAGACCAGCACGCCTACAGGGGAGTT
GGACGTACAATTTCAAGCCATATCCGTGGCGAGAATTTCGTTCCGCCCTC
ATTGGACGGCACCATACTTAGATGTCAGCATGCAGACTCCGGCGTCCCGA
GTCTTTCAATCTGCATTTGCCTCCCTTGCAACTACCGCCGCCTTGTCTAC
CGCCCTCCGCAACATTCAAGCCCTACCGGAGTCATTGGAATACACTAAGG
GTGCAGGTGATGTATTCAATGGGACCTTTGACAGAATACGCCGCGGTTTG
TGGGACCTGATAGACTACGGAAAGCCCCTACTCTTTGCCGGAGCTCCGTT
GCCGCTTGTGCTATTTGTAACAAGAAAGGACCAAGGATCTTGTTCCAATG
AGAGAAAATAAATGTATGATTTGAAATCTCCGCATGAGCACTCCTCTTGT
AAGGATTTCGCATTCCATGAAGCTACTTACATCAGGATGCACGTTTTAAA
CCCAACACATGCAGCAGCATCGTGGAGGGCTGGCGTGCCATTGGCCCCAA
TCACAATGActgctcctctccattcTCAGACTCAGCACCTGACCGTGATG
AGCGACGCCGAAGTTTGCGACGTGGTTGAGGACACATTTACTTTTCGATT
CGATAAATTGTACGACTTCGTGCGCGGGCACGTGGTTGACACCTTGCGGA
AGCCGCGGTTAGTATTGGCTGTAGGATGGCATGAGGAGACCAGCACGCCT
ACAGGGGAGTTGGACGTACAATTTCAAGCCATATCCGTGGCGAGAATTTC
GTTCCGCCCTCATTGGACGGCACCATACTTAGATGTCAGCATGCAGACTC
CGGCGTCCCGAGTCTTTCAATCTGCATTTGCCTCCCTTGCAACTACCGCC
GCCTTGTCTACCGCCCTCCGCAACATTCAAGCCCTACCGGAGTCATTGGA
ATACACTAAGGGTGCAGGTGATGTATTCAATGGGACCTTTGACAGAATAC
GCCGCGGTTTGTGGGACCTGATAGACTACGGAAAGCCCCTACTCTTTGCC
GGAGCTCCGTTGCCGCTTGTGCTATTTGTAACAAGAAAGGACCAAGGATC
TTGTTCCAATGAGAGAAAATAA
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Synonyms
Publications