rna7988, rna7988 (mRNA) Nannochloropsis gaditana

Overview
Namerna7988
Unique Namerna7988
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length882
Alignment locationKK037247.1:294804..295371 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102585g1.4393.mrna
Orig protein idgnl|cribi|Naga_102585g1.4393
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:294804..295371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102585g1gene7735Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7988rna7988-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22707.1cds7966Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7988 ID=rna7988|Name=rna7988|organism=Nannochloropsis gaditana|type=mRNA|length=882bp
ATGAGATCGGGTTTGCTCCTCCATCCTCTGAGCGCTACTGTCGCCACCAC
GGCCCCCTTCCTACTCAGCCCAAGAATCACGGCGACGTTTTCGACGCTGA
CACGTGCGAACTCGCTACCGCGTATGGCTTCGTCCGCTTCTTTTTCGATA
GAGAATGACGGTGGCAACACTGCCCCCAAAGTCGCGATTATTGGAGCGGG
CATCGCGGGACTTACTTGCGCCCGTACGCTCCTAACCTCCTGCCCTACTG
CTCGTGTCTCGCTCTTCGAAAAGAGTACCAGCCACGGTCGATGCGCCACA
CGGACCGTCCGTGGGATCGGCAACTTTGATCATGGGGCCCCGCATTTCTC
AGCTTTTAGCCCTGCCTTTCGCGAGCAGGTCCAGACTTGGCGGGAAGCAG
GCTTGGTAGTGCCCCTCTCACCTTTCACCTCGTCTTCCGACTCGACCTCG
GCGGCGGCAACAGCCCGTTATGTTGTGCACCCCAGCATGCGCACCCTTCC
TACGCATCTCGCGGAAGGACTCGCCGTACATCGGCCTCTTTTGATCGCCA
AACTTGAGTACATTCGGAAGGCGCAAGGACAGGATGCCAGCCAGGAGCAG
TCCGCCCCCTCCTCTCCTCCCGGTCATCAGGGCGGATGGGCCCTCCACCA
CGACCAGAGCACTGTCCCAGAAGTCTTTGATGCCGTCGTGGTCGCGGTCC
CCGCGGAGCAAAGCTGTGCCCTCTTGTCGCCCGTGTCCCCGGGCCTGGCC
TCCCTACTCGCACCGGTTCGGAGCCGTCCTTGCCTGAGCGTGCTTGTGGC
TTGGGATGGGCCTACAGGCGCCCCTTGGAGCGAGTGGACGGCCGACATGG
ATGGCGAAGACGGGTGCGTGGGAGCATCCTAG
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protein sequence of rna7988

>rna7988-protein ID=rna7988-protein|Name=rna7988|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
GKVNCGCFMPHLSTPPVTSRPSPSPRKKSCPMCCALFRGNSGAAKKVAAR
DREGGRNRLTSPSSVGCTRKRTTRPGPRTDGKRECGWELAGTGGREGGLG
GGSRGRGAGVVEWKGVG
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mRNA from alignment at KK037247.1:294804..295371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7988 ID=rna7988|Name=rna7988|organism=Nannochloropsis gaditana|type=mRNA|length=568bp|location=Sequence derived from alignment at KK037247.1:294804..295371+ (Nannochloropsis gaditana)
GGGAAGGTGAATTGTGGGTGTTTCATGCCACACCTGAGTACTCCGCCCGT
TACATCCAGACCGAGCCCTTCCCCCAGGAAAAAGTCGTGTCCGATGTGTT
GCGCTCTTTTTCGGGGAAATTCGGGAGCGGCGAAGAAGGTGGCGGCAcgc
gacagggagggaggaagaaaccgGCTTACGTCGCCGTCCAGCGTTGGCTG
TACTCGCAAACGGACAACCCGGCCAGGCCCTCGTACGgatgggaagaggg
agtgcggCTGGGAGCTTGCGgggacgggtgggagggagggagggttgggg
ggagggagcagagggcGTGGAGCGGGCGTGGTTGAGTGGAAAGGGGTTGG
GTGAGAGgatcgccgcctccttcacaAGGAAGAGCGGCTAACGAGGGCaa
gcggatggagggaagagaagtaCAGGGGAGGTGTCGAGGCACGGTGGAAA
AGTGGACTTTCAGTTGCAACTTTTGAATCAAAGAGGGCACAACAACCCTT
CTCTCCCGTGCGACATTGGTTTAAAAACTTCCCCACGCGTAAGGAAAATT
TCGACAAAATTTCGAACA
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Coding sequence (CDS) from alignment at KK037247.1:294804..295371+

>rna7988 ID=rna7988|Name=rna7988|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at KK037247.1:294804..295371+ (Nannochloropsis gaditana)
GGGAAGGTGAATTGTGGGTGTTTCATGCCACACCTGAGTACTCCGCCCGT
TACATCCAGACCGAGCCCTTCCCCCAGGAAAAAGTCGTGTCCGATGTGTT
GCGCTCTTTTTCGGGGAAATTCGGGAGCGGCGAAGAAGGTGGCGGCAcgc
gacagggagggaggaagaaaccgGCTTACGTCGCCGTCCAGCGTTGGCTG
TACTCGCAAACGGACAACCCGGCCAGGCCCTCGTACGgatgggaagaggg
agtgcggCTGGGAGCTTGCGgggacgggtgggagggagggagggttgggg
ggagggagcagagggcGTGGAGCGGGCGTGGTTGAGTGGAAAGGGGTTGG
GTGA
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Synonyms
Publications