EWM22707.1, cds7966 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22707.1
Unique Name	cds7966
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037247.1:294804..295157 +

Link to JBrowse

Properties


Property Name	Value
Start range	294804
Start range	.
Protein id	EWM22707.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_102585g1.4393.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:294804..295157 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM22707.1 vs. NCBI_GenBank
Match: gi|585103282|gb|EWM22707.1| (hypothetical protein Naga_102585g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 226.868 bits (577), Expect = 3.811e-75
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query:    1 GKVNCGCFMPHLSTPPVTSRPSPSPRKKSCPMCCALFRGNSGAAKKVAARDREGGRNRLTSPSSVGCTRKRTTRPGPRTDGKRECGWELAGTGGREGGLGGGSRGRGAGVVEWKGVG 117
            GKVNCGCFMPHLSTPPVTSRPSPSPRKKSCPMCCALFRGNSGAAKKVAARDREGGRNRLTSPSSVGCTRKRTTRPGPRTDGKRECGWELAGTGGREGGLGGGSRGRGAGVVEWKGVG
Sbjct:    1 GKVNCGCFMPHLSTPPVTSRPSPSPRKKSCPMCCALFRGNSGAAKKVAARDREGGRNRLTSPSSVGCTRKRTTRPGPRTDGKRECGWELAGTGGREGGLGGGSRGRGAGVVEWKGVG 117

The following BLAST results are available for this feature:

BLAST of EWM22707.1 vs. NCBI_GenBank

BLAST of EWM22707.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103282\|gb\|EWM22707.1\|	3.811e-75	100.00	hypothetical protein Naga_102585g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7988	rna7988	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications