rna7987, rna7987 (mRNA) Nannochloropsis gaditana

Overview
Namerna7987
Unique Namerna7987
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1908
Alignment locationKK037247.1:293616..294703 +

Link to JBrowse

Properties
Property NameValue
Productfad dependent oxidoreductase
Orig transcript idgnl|cribi|Naga_100515g1.1461.mrna
Orig protein idgnl|cribi|Naga_100515g1.1461
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:293616..294703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100515g1gene7734Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7987rna7987-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22709.1cds7965Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7987 ID=rna7987|Name=rna7987|organism=Nannochloropsis gaditana|type=mRNA|length=1908bp
ATGCAGGAGAATGGTGGGCCTGGAAATGTGAATGATAGTGTGAATAATGA
CGTTCCGGAGCGTGTTAACCATCCATTGGACTTGGCTGGGCACAAAAGCG
AGTTGGGCCCTAGCTGTGAGGGCAATGGCGTTGAGCATAAGGCCGAACGA
CGGGATGACAAAGCTCTACAAAGAAGCCGAACTCTTCCCCACAGAATGTT
GTCTCGGCAGACTTCCAGCCAATCATTTATGGTGCGACAGCTGGAAAGTC
TTCGCGCTCCGTCCTTGAGCCGCGTCGCCTTATCCGGTGCCCCCAGTGAC
ATCCCGGACGTGGGACTGATGCTGCCTCACGTGGATTTGGACGTGAAAAC
CGAGGAGGCCAAGATGCTGTGTATTCCAGGAACGAGATGGCATATGCTTC
TGGTGGTCCTTGCTTGCAGTATTGCCTTTGGACCCTCCTTTTCTCGCTCC
ATCTTGAGCGCAGTGAGTGCGGACGTGATGCTTGCCTTTGGCATGACGAA
AGCCACCTACGGAGCTCTGTCAGGTCTACCGGCTATTCCCAACATCTTTG
CCTCCCCCATTGGTGGTGCCATTGTCGACCGGTTGGGCGCGGATAAGAGT
TGCGTCCTCTATTCGGGTATCACCGTCTTGGGCAGCATATGCCTGTCGAC
GGCCGTCTACATCCGTTCCGTCCATCTGCTCGCCGCCGCCCAGATCCTTC
TCGGGATCGGGAGGGGCACGCTGGTCATTGCTCAGAAGGTGTTTCTCAAG
CTGGCGGCGGACCCGAAGGAGACCTCCTTCCTCTTCGCCCTCTCTTTCTC
CATCTCCCACGCTGGAATGTTCATGGCCTTCTTCCTCTCCCCCCTGATCG
AGGACAACAGCCCCTATGGGTACCTGGCGAGCGTGTGGGCCAGCACAGGT
ATCACCGTGCTCTCCTTTCTCTGCACGATCCCCCTCCTGGGCAAGCTCAG
ACACATCCTCCCCTTGCTGAGGGCCGAGGAGCAGGAGTCTTTCTTGGCGG
ACGAGGAGGAGGAGGAGGAGGACGGGAAAGCTGGAGAAGCAGAGGAAAGG
GGGGGCGGCCCGACGGCGTCTTCGAGGTGGGACAGGCGAGAGGAAGGCTC
GTGGGTGGAGCTGGTCGGCGCGGGCACCTTGCAACGGGTCATGAACGCGA
GCAGAAGACAGGGCAGGGGCGCCTCCATGAGCGATCTGGCCAACCACCCG
ATCCCCTCCCCCTCCTGCTGGCAGACGGCCTATCAGTACTTCGAGGACCT
GATCTCCATCCCCTTCTTCCTCCTGGTCCTCTGCATCGTCTGCTACTACA
TGGCCTTCGTCCCCCTGGAGACCTTCGCCGTCGACTACCTCAAGTCCGAC
CTGGGCTACAAGGCCTCCACTGCCTCGCTCGGGGCCTCCCTGGTCATGCT
TGGCTCCGTCTTCCTCGGGCCTTTCTTCGGCCTCCGCGTGGACATCGAGC
TCTGGAAGAAGGGCGTGCCCGGGCAATGGACGCGCCGTTTGTGTCCGCCG
GGGGCGACGCAGGCCTGGGCTATGTTCCTGACCGGGACGGGCATCCTCAC
CGTCACGCTCGCTCCCACCAAGTGGCCGTGGGGCTTCGCCTTGGTCAGCA
TCGGGTATGCCATGGCTTGCGCTGCGCTCTGGTCGTCGGTGCCGGAGGTG
GTGAAAGCCCGGTCCCTGGGGCTGGCCTTCGGGGTGATCCACGCCGTGAT
GGACGTCATGATCATGGTCACCGAGGTGGTGATAGGCCGGCTCTTGGATA
CCGGGCACACCTATGAATCCGCCGTGTGGCCCATGTTGGTCGGCTTCACG
ACGGCGGGTTTCCTCGCCACGCTCGCGCTGATGCACGTGTTGATGACGCA
AGTCAAATTGAACGCGGTCATTGCGGCTATGACGGATAACGAAGATTGGG
ACGAATAG
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protein sequence of rna7987

>rna7987-protein ID=rna7987-protein|Name=rna7987|organism=Nannochloropsis gaditana|type=polypeptide|length=293bp
MRSGLLLHPLSATVATTAPFLLSPRITATFSTLTRANSLPRMASSASFSI
ENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTSHGRCAT
RTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTS
AAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQ
SAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLA
SLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVGAS
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mRNA from alignment at KK037247.1:293616..294703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7987 ID=rna7987|Name=rna7987|organism=Nannochloropsis gaditana|type=mRNA|length=1088bp|location=Sequence derived from alignment at KK037247.1:293616..294703+ (Nannochloropsis gaditana)
ATGAGATCGGGtttgctcctccatcctctgaGCGCTACTgtcgccaccac
ggccccCTTCCTACTCAGCCCAAGAATCACGGCGACGTTTTCGACGCTGA
CACGTGCGAACTCGCTACCGCGTATGGCTTCGTCCGCTTCTTTTTCGATA
GAGAATGACGGTGGCAACACTGCCCCCAAAGTCGCGATTATTGGAGCGGG
CATCGCGGGACTTACTTGCGCCCGTACGCTCctaacctcctgccctaCTG
CTCGTGTCTCGCTCTTCGAAAAGAGTACCAGCCACGGTCGATGCGCCACA
CGGACCGTCCGTGGGATCGGCAACTTTGATCATGGGGCCCCGCATTTCTC
AGCTTTTAGCCCTGCCTTTCGCGAGCAGGTCCAGACTTGGCGGGAAGCAG
GCTTGGTAGTGCCCCTCTCACCTTTCACCTCGTCTTCCGACTCGACCTCG
GCGGCGGCAACAGCCCGTTATGTTGTGCACCCCAGCATGCGCACCCTTCC
TACGCATCTCGCGGAAGGACTCGCCGTACATCGGCCTCTTTTGATCGCCA
AACTTGAGTACATTCGGAAGGCGCAAGGACAGGATGCCAGCCAGGAGCag
tccgccccctcctctcctcccggtcATCAGGGCGGATgggccctccacca
cgaccaGAGCACTGTCCCAGAAGTCTTTGATGCCGTCGTGGTCGCGGTCC
CCGCGGAGCAAAGCTGTGCCCTCTTGTCGCCCGTGTCCCCGGGCCTGGCC
TCCCTACTCGCACCGGTTCGGAGCCGTCCTTGCCTGAGCGTGCTTGTGGC
TTGGGATGGGCCTACAGGCGCCCCTTGGAGCGAGTGGACGGCCGACATGG
ATGGCGAAGACGGGTGCGTGGGAGGTGACAGCCATGTGCGAGTGTCTGGG
CCCGGTCTGGCGTTCAACCTGTGCCTCCAGgttcactccctcctcttccc
cccagaCCATTCGAGACTGtcgcccctcttcttccctccgaccgacttcc
tctctctttcccgcaTCCCATGCACTATCCCTTATTCCaaaccttcttcc
cccccctcctgcccttcatACCCCTCTCAGCATCCTAG
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Coding sequence (CDS) from alignment at KK037247.1:293616..294703+

>rna7987 ID=rna7987|Name=rna7987|organism=Nannochloropsis gaditana|type=CDS|length=1764bp|location=Sequence derived from alignment at KK037247.1:293616..294703+ (Nannochloropsis gaditana)
ATGAGATCGGGtttgctcctccatcctctgaGCGCTACTgtcgccaccac
ggccccCTTCCTACTCAGCCCAAGAATCACGGCGACGTTTTCGACGCTGA
CACGTGCGAACTCGCTACCGCGTATGGCTTCGTCCGCTTCTTTTTCGATA
GAGAATGACGGTGGCAACACTGCCCCCAAAGTCGCGATTATTGGAGCGGG
CATCGCGGGACTTACTTGCGCCCGTACGCTCctaacctcctgccctaCTG
CTCGTGTCTCGCTCTTCGAAAAGAGTACCAGCCACGGTCGATGCGCCACA
CGGACCGTCCGTGGGATCGGCAACTTTGATCATGGGGCCCCGCATTTCTC
AGCTTTTAGCCCTGCCTTTCGCGAGCAGGTCCAGACTTGGCGGGAAGCAG
GCTTGGTAGTGCCCCTCTCACCTTTCACCTCGTCTTCCGACTCGACCTCG
GCGGCGGCAACAGCCCGTTATGTTGTGCACCCCAGCATGCGCACCCTTCC
TACGCATCTCGCGGAAGGACTCGCCGTACATCGGCCTCTTTTGATCGCCA
AACTTGAGTACATTCGGAAGGCGCAAGGACAGGATGCCAGCCAGGAGCag
tccgccccctcctctcctcccggtcATCAGGGCGGATgggccctccacca
cgaccaGAGCACTGTCCCAGAAGTCTTTGATGCCGTCGTGGTCGCGGTCC
CCGCGGAGCAAAGCTGTGCCCTCTTGTCGCCCGTGTCCCCGGGCCTGGCC
TCCCTACTCGCACCGGTTCGGAGCCGTCCTTGCCTGAGCGTGCTTGTGGC
TTGGGATGGGCCTACAGGCGCCCCTTGGAGCGAGTGGACGGCCGACATGG
ATGGCGAAGACGGGTGCGTGGGAGCATCCTAGATGAGATCGGGtttgctc
ctccatcctctgaGCGCTACTgtcgccaccacggccccCTTCCTACTCAG
CCCAAGAATCACGGCGACGTTTTCGACGCTGACACGTGCGAACTCGCTAC
CGCGTATGGCTTCGTCCGCTTCTTTTTCGATAGAGAATGACGGTGGCAAC
ACTGCCCCCAAAGTCGCGATTATTGGAGCGGGCATCGCGGGACTTACTTG
CGCCCGTACGCTCctaacctcctgccctaCTGCTCGTGTCTCGCTCTTCG
AAAAGAGTACCAGCCACGGTCGATGCGCCACACGGACCGTCCGTGGGATC
GGCAACTTTGATCATGGGGCCCCGCATTTCTCAGCTTTTAGCCCTGCCTT
TCGCGAGCAGGTCCAGACTTGGCGGGAAGCAGGCTTGGTAGTGCCCCTCT
CACCTTTCACCTCGTCTTCCGACTCGACCTCGGCGGCGGCAACAGCCCGT
TATGTTGTGCACCCCAGCATGCGCACCCTTCCTACGCATCTCGCGGAAGG
ACTCGCCGTACATCGGCCTCTTTTGATCGCCAAACTTGAGTACATTCGGA
AGGCGCAAGGACAGGATGCCAGCCAGGAGCagtccgccccctcctctcct
cccggtcATCAGGGCGGATgggccctccaccacgaccaGAGCACTGTCCC
AGAAGTCTTTGATGCCGTCGTGGTCGCGGTCCCCGCGGAGCAAAGCTGTG
CCCTCTTGTCGCCCGTGTCCCCGGGCCTGGCCTCCCTACTCGCACCGGTT
CGGAGCCGTCCTTGCCTGAGCGTGCTTGTGGCTTGGGATGGGCCTACAGG
CGCCCCTTGGAGCGAGTGGACGGCCGACATGGATGGCGAAGACGGGTGCG
TGGGAGCATCCTAG
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Synonyms
Publications