EWM22709.1, cds7965 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|585103285|gb|EWM22709.1| (fad dependent oxidoreductase [Nannochloropsis gaditana]) HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
Query: 1 MRSGLLLHPLSATVATTAPFLLSPRITATFSTLTRANSLPRMASSASFSIENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTSHGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVGAS 293
MRSGLLLHPLSATVATTAPFLLSPRITATFSTLTRANSLPRMASSASFSIENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTSHGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVGAS
Sbjct: 1 MRSGLLLHPLSATVATTAPFLLSPRITATFSTLTRANSLPRMASSASFSIENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTSHGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVGAS 293
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|921027310|ref|WP_053066780.1| (FAD-dependent oxidoreductase [Archangium gephyra] >gi|827424430|gb|AKJ04326.1| Amine oxidase, flavin-containing protein [Archangium gephyra]) HSP 1 Score: 105.531 bits (262), Expect = 1.246e-22 Identity = 85/225 (37.78%), Postives = 111/225 (49.33%), Query Frame = 0
Query: 57 TAPKVAIIGAGIAGLTCARTLL-TSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPL-SPFTSSSDSTSAAAT---ARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAP 275
T P+VAIIGAG+AGLT AR L T P V +F+K GR +TR G G FDHGA +F+A P F+ V TW E GLV F S T T RYV P M + LA G+ + + ++E++R+ DA WAL + F+ VV AVPA Q+ LLS +P LA+ A VR PC +V+ ++D P P
Sbjct: 17 TPPRVAIIGAGLAGLTLARFLTETGFP---VKVFDKGRGPAGRMSTRREDGGGTFDHGAQYFTARDPGFQRMVGTWVEQGLVAEWRGRFGSLEHGTVTPQTEGPVRYVGVPGMNAVARRLASGVDLRSGV---RVEHVRRE--ADA----------------WALTSESGEALGTFEVVVAAVPAPQAVPLLSG-APELAARAAGVRMEPCWAVMASFDAPVALP 216
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1055867928|gb|ODA35036.1| (hypothetical protein A6X21_04345 [Planctopirus sp. JC280]) HSP 1 Score: 106.686 bits (265), Expect = 3.683e-22 Identity = 75/230 (32.61%), Postives = 116/230 (50.43%), Query Frame = 0
Query: 60 KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTS-----AAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADM 283
KVA+IGAG+AGL ARTL S V +FEKS GR ATR + G FDHG + +A + F + +++W GL+ P ++ D+ AA RYV P M ++ HL++GL VH+ + I K+E I A+Q W L + Q V FD +++A+PA Q+ L+ +A +LA + PC +V+ + P P+ + +++
Sbjct: 440 KVAVIGAGMAGLMAARTL--SDHGFEVEVFEKSRGLGGRMATRRLADGGQFDHGCQYITARTSQFEKSLRSWENQGLITPWQGLLAAQDANGSWKELAANGPRYVGVPGMTSIARHLSQGLRVHQEVQIQKVERI-------ANQ--------------WHLQNTQGAVAGPFDQLILAIPAGQAARLVGEYP--MAEILARIPMDPCWTVMASLADPLHLPFDGYLSEV 644
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1178786367|ref|WP_083233409.1| (hypothetical protein [Planctopirus sp. JC280]) HSP 1 Score: 106.686 bits (265), Expect = 3.735e-22 Identity = 75/230 (32.61%), Postives = 116/230 (50.43%), Query Frame = 0
Query: 60 KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTS-----AAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADM 283
KVA+IGAG+AGL ARTL S V +FEKS GR ATR + G FDHG + +A + F + +++W GL+ P ++ D+ AA RYV P M ++ HL++GL VH+ + I K+E I A+Q W L + Q V FD +++A+PA Q+ L+ +A +LA + PC +V+ + P P+ + +++
Sbjct: 542 KVAVIGAGMAGLMAARTL--SDHGFEVEVFEKSRGLGGRMATRRLADGGQFDHGCQYITARTSQFEKSLRSWENQGLITPWQGLLAAQDANGSWKELAANGPRYVGVPGMTSIARHLSQGLRVHQEVQIQKVERI-------ANQ--------------WHLQNTQGAVAGPFDQLILAIPAGQAARLVGEYP--MAEILARIPMDPCWTVMASLADPLHLPFDGYLSEV 746
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|502873594|ref|WP_013108570.1| (DNA photolyase FAD-binding protein [Planctopirus limnophila] >gi|296012900|gb|ADG66139.1| DNA photolyase FAD-binding protein [Planctopirus limnophila DSM 3776]) HSP 1 Score: 104.76 bits (260), Expect = 1.849e-21 Identity = 78/212 (36.79%), Postives = 104/212 (49.06%), Query Frame = 0
Query: 60 KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPF-----TSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVL 265
KVA+IGAGI GL ARTL S V +FEKS GR ATR + G FDHG + +A SP F +++W GL+ P T S AA RYV P M ++ HL++GL VH+ + I K+E I A+Q W L Q TV FD +++A+PA Q+ L+ LA LA + PC +V+
Sbjct: 490 KVAVIGAGITGLMAARTL--SDHGFEVEVFEKSRGLGGRMATRRLPEGGQFDHGCQYITAKSPQFERSLRSWESQGLITPWQGLLAAQRTDGSWKELAANGPRYVGLPGMTSMARHLSQGLKVHQEVQIQKVERI-------ANQ--------------WQLQSTQGTVAGPFDQLILAIPAGQAARLVG--EHPLAETLARIPMDPCWTVM 676
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1001916986|gb|KXS38082.1| (Dehydrosqualene desaturase [Halomonadaceae bacterium T82-2]) HSP 1 Score: 100.138 bits (248), Expect = 1.104e-20 Identity = 80/214 (37.38%), Postives = 102/214 (47.66%), Query Frame = 0
Query: 57 TAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPL--SPFTSSSDSTSAAATA-RYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLV 266
T +AIIGAGIAGL CAR L+ V LF+K+ GR A R V FD GA HF+A PAFR+ + WR+AGLV P P+ ++D A A R+ P M L HLAEGL VH GQ +S P GW L + + F VV+A+P Q+ LL P++P LA+ PC + V
Sbjct: 2 TVAPLAIIGAGIAGLACARVLVDHGRA--VQLFDKARGPGGRLANRRVDET-VFDLGAQHFTARHPAFRQALSAWRDAGLVAPWPTRPWRVTADGWQPAPDAERFTAVPRMSALARHLAEGLEVH--------------TGQRIIAIRSTPE-------GWWLAAETNAHHGPFAGVVLALPTPQAAVLLGPIAPELAAACTQRPMTPCWAACV 191
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1084822428|gb|OGQ56700.1| (hypothetical protein A3J24_04555 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8]) HSP 1 Score: 99.7525 bits (247), Expect = 1.360e-20 Identity = 79/220 (35.91%), Postives = 110/220 (50.00%), Query Frame = 0
Query: 61 VAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATA--------RYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEV-----FDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLV 266
+AIIGAG+AGLTCAR L T V L+EK+ GR +TR +G FD+GA +F+A S AF+++V WR+AG V P S D+ A A R V P M ++ HLA+GL + + ++E H W L + TVP FDAVV+A PA+ + ALL P +P LA+ A V PC ++++
Sbjct: 3 IAIIGAGLAGLTCARRLELQGNT--VILYEKNADVSGRMSTRETE-LGGFDYGAQYFTATSDAFKKEVAGWRKAGWVAPWEGKLVSLDNGVAKAAGRSGGASGQRLVAVPGMGSIGRHLAQGLDIRTEQRVKRIE---------------------SHGNQWLLAVESETVPIDASAGPFDAVVIAAPADHAAALLEP-APKLAAQAATVHLAPCWAIML 197
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1054995278|ref|WP_066747906.1| (deoxyribodipyrimidine photolyase [Sphingomonadales bacterium EhC05] >gi|1032127261|gb|OAN99435.1| deoxyribodipyrimidine photolyase [Sphingomonadales bacterium EhC05]) HSP 1 Score: 97.4413 bits (241), Expect = 5.907e-20 Identity = 72/216 (33.33%), Postives = 108/216 (50.00%), Query Frame = 0
Query: 60 KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATR---TVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGP 271
K AIIGAG+AGL CA L+ S + R LF+K+ GR +TR + G +FDHGA +F+A P+F+ ++TW +AG+V AA +V P+M LA H A +E + K G+D GW L + + E FD +++A+PAEQ+ LL+P A++ A S PC ++++A+D P
Sbjct: 3 KFAIIGAGLAGLACADELIASGHSVR--LFDKARGPGGRMSTRRTDSASGQVSFDHGAQYFTARDPSFQSLIETWSDAGIVA----------RWPAAGADAWVGVPTMNAPVKQLA---GRHDVTWSAHIEALLK--GED----------------GWHLKFREGALIEPFDHIILAIPAEQAADLLAPTGSEFAAIAAKTVSAPCWTLMLAYDEP 185
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|936190263|ref|WP_054524461.1| (MULTISPECIES: deoxyribodipyrimidine photo-lyase [Citromicrobium] >gi|934280229|gb|KPM25683.1| deoxyribodipyrimidine photolyase [Citromicrobium sp. RCC1885] >gi|934283487|gb|KPM28925.1| deoxyribodipyrimidine photolyase [Citromicrobium sp. RCC1878] >gi|1030119712|gb|OAM09522.1| deoxyribodipyrimidine photolyase [Citromicrobium sp. RCC1897]) HSP 1 Score: 97.4413 bits (241), Expect = 6.503e-20 Identity = 81/235 (34.47%), Postives = 110/235 (46.81%), Query Frame = 0
Query: 61 VAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIG---NFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVG 291
VA+IGAG+AGLTCA L+ + V++F+K GR ATR V G FDHGA +F+A AF+ QV+ W G+V P AA +V P M +AE L V IA L P +GGW L + + FDAVV+AVPAEQ+ LL+ +P A V+S PC + +VA++ AP D ++G +G
Sbjct: 3 VAVIGAGMAGLTCASRLVEAGHN--VAVFDKGRGPGGRMATRRVEHDGATFRFDHGAQYFTAREMAFQTQVRAWDADGIVAPWP----------AAKDGAWVGTPGMNAPIRAMAEALEVRFSTRIAGL----------------VPD-----RGGWRLEG-EGAPDDRFDAVVIAVPAEQAAPLLAVHAPDFAEDARDVKSEPCWTAMVAFESRVDAP------DTLADEGAIG 197
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|589616045|gb|EXI87303.1| (protoporphyrinogen oxidase [Candidatus Accumulibacter sp. BA-93]) HSP 1 Score: 97.0561 bits (240), Expect = 1.233e-19 Identity = 78/233 (33.48%), Postives = 113/233 (48.50%), Query Frame = 0
Query: 50 IENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIG-NFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSP----FTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHH-DQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAP 275
I+ + N P +A+IGAGIAGL+CA L + VSLF+KS S GR +TR RG DHGA +F+A PAFR +V+ W++AG+ +P F S R+V P+M +LA LAVH I + P H GW + +Q + F AV++AVP+ Q+ LL +P LA+L + R C ++++ + P P
Sbjct: 2 IDKEAMNYPPHIALIGAGIAGLSCATALQRA--GLEVSLFDKSRSPGGRMSTR--RGDDWQCDHGAQYFTARHPAFRAEVERWQQAGVAGVWAPRLSMFDGDSPEEREPTVERFVGMPTMTAPARYLASTLAVHARTNIQQFR-------------------PQAH--GWQVFSAEQGWLETRFAAVLLAVPSPQAVPLLQQAAPDLAALASSAVMRGCWALMLRFAAPVDLP 209 The following BLAST results are available for this feature:
BLAST of EWM22709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|