EWM22709.1, cds7965 (CDS) Nannochloropsis gaditana

Overview
NameEWM22709.1
Unique Namecds7965
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:293616..294489 +
Alignment locationKK037247.1:294696..294703 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22709.1
Productfad dependent oxidoreductase
Orig transcript idgnl|cribi|Naga_100515g1.1461.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:293616..294489 +
KK037247.1supercontigKK037247.1:294696..294703 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|585103285|gb|EWM22709.1| (fad dependent oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
Query:    1 MRSGLLLHPLSATVATTAPFLLSPRITATFSTLTRANSLPRMASSASFSIENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTSHGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVGAS 293
            MRSGLLLHPLSATVATTAPFLLSPRITATFSTLTRANSLPRMASSASFSIENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTSHGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVGAS
Sbjct:    1 MRSGLLLHPLSATVATTAPFLLSPRITATFSTLTRANSLPRMASSASFSIENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTSHGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVGAS 293          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|921027310|ref|WP_053066780.1| (FAD-dependent oxidoreductase [Archangium gephyra] >gi|827424430|gb|AKJ04326.1| Amine oxidase, flavin-containing protein [Archangium gephyra])

HSP 1 Score: 105.531 bits (262), Expect = 1.246e-22
Identity = 85/225 (37.78%), Postives = 111/225 (49.33%), Query Frame = 0
Query:   57 TAPKVAIIGAGIAGLTCARTLL-TSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPL-SPFTSSSDSTSAAAT---ARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAP 275
            T P+VAIIGAG+AGLT AR L  T  P   V +F+K     GR +TR   G G FDHGA +F+A  P F+  V TW E GLV      F S    T    T    RYV  P M  +   LA G+ +   +   ++E++R+    DA                WAL  +       F+ VV AVPA Q+  LLS  +P LA+  A VR  PC +V+ ++D P   P
Sbjct:   17 TPPRVAIIGAGLAGLTLARFLTETGFP---VKVFDKGRGPAGRMSTRREDGGGTFDHGAQYFTARDPGFQRMVGTWVEQGLVAEWRGRFGSLEHGTVTPQTEGPVRYVGVPGMNAVARRLASGVDLRSGV---RVEHVRRE--ADA----------------WALTSESGEALGTFEVVVAAVPAPQAVPLLSG-APELAARAAGVRMEPCWAVMASFDAPVALP 216          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1055867928|gb|ODA35036.1| (hypothetical protein A6X21_04345 [Planctopirus sp. JC280])

HSP 1 Score: 106.686 bits (265), Expect = 3.683e-22
Identity = 75/230 (32.61%), Postives = 116/230 (50.43%), Query Frame = 0
Query:   60 KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTS-----AAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADM 283
            KVA+IGAG+AGL  ARTL  S     V +FEKS    GR ATR +   G FDHG  + +A +  F + +++W   GL+ P     ++ D+       AA   RYV  P M ++  HL++GL VH+ + I K+E I       A+Q              W L + Q  V   FD +++A+PA Q+  L+      +A +LA +   PC +V+ +   P   P+  + +++
Sbjct:  440 KVAVIGAGMAGLMAARTL--SDHGFEVEVFEKSRGLGGRMATRRLADGGQFDHGCQYITARTSQFEKSLRSWENQGLITPWQGLLAAQDANGSWKELAANGPRYVGVPGMTSIARHLSQGLRVHQEVQIQKVERI-------ANQ--------------WHLQNTQGAVAGPFDQLILAIPAGQAARLVGEYP--MAEILARIPMDPCWTVMASLADPLHLPFDGYLSEV 644          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1178786367|ref|WP_083233409.1| (hypothetical protein [Planctopirus sp. JC280])

HSP 1 Score: 106.686 bits (265), Expect = 3.735e-22
Identity = 75/230 (32.61%), Postives = 116/230 (50.43%), Query Frame = 0
Query:   60 KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTS-----AAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADM 283
            KVA+IGAG+AGL  ARTL  S     V +FEKS    GR ATR +   G FDHG  + +A +  F + +++W   GL+ P     ++ D+       AA   RYV  P M ++  HL++GL VH+ + I K+E I       A+Q              W L + Q  V   FD +++A+PA Q+  L+      +A +LA +   PC +V+ +   P   P+  + +++
Sbjct:  542 KVAVIGAGMAGLMAARTL--SDHGFEVEVFEKSRGLGGRMATRRLADGGQFDHGCQYITARTSQFEKSLRSWENQGLITPWQGLLAAQDANGSWKELAANGPRYVGVPGMTSIARHLSQGLRVHQEVQIQKVERI-------ANQ--------------WHLQNTQGAVAGPFDQLILAIPAGQAARLVGEYP--MAEILARIPMDPCWTVMASLADPLHLPFDGYLSEV 746          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|502873594|ref|WP_013108570.1| (DNA photolyase FAD-binding protein [Planctopirus limnophila] >gi|296012900|gb|ADG66139.1| DNA photolyase FAD-binding protein [Planctopirus limnophila DSM 3776])

HSP 1 Score: 104.76 bits (260), Expect = 1.849e-21
Identity = 78/212 (36.79%), Postives = 104/212 (49.06%), Query Frame = 0
Query:   60 KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPF-----TSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVL 265
            KVA+IGAGI GL  ARTL  S     V +FEKS    GR ATR +   G FDHG  + +A SP F   +++W   GL+ P         T  S    AA   RYV  P M ++  HL++GL VH+ + I K+E I       A+Q              W L   Q TV   FD +++A+PA Q+  L+      LA  LA +   PC +V+
Sbjct:  490 KVAVIGAGITGLMAARTL--SDHGFEVEVFEKSRGLGGRMATRRLPEGGQFDHGCQYITAKSPQFERSLRSWESQGLITPWQGLLAAQRTDGSWKELAANGPRYVGLPGMTSMARHLSQGLKVHQEVQIQKVERI-------ANQ--------------WQLQSTQGTVAGPFDQLILAIPAGQAARLVG--EHPLAETLARIPMDPCWTVM 676          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1001916986|gb|KXS38082.1| (Dehydrosqualene desaturase [Halomonadaceae bacterium T82-2])

HSP 1 Score: 100.138 bits (248), Expect = 1.104e-20
Identity = 80/214 (37.38%), Postives = 102/214 (47.66%), Query Frame = 0
Query:   57 TAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPL--SPFTSSSDSTSAAATA-RYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLV 266
            T   +AIIGAGIAGL CAR L+       V LF+K+    GR A R V     FD GA HF+A  PAFR+ +  WR+AGLV P    P+  ++D    A  A R+   P M  L  HLAEGL VH               GQ     +S P        GW L  + +     F  VV+A+P  Q+  LL P++P LA+        PC +  V
Sbjct:    2 TVAPLAIIGAGIAGLACARVLVDHGRA--VQLFDKARGPGGRLANRRVDET-VFDLGAQHFTARHPAFRQALSAWRDAGLVAPWPTRPWRVTADGWQPAPDAERFTAVPRMSALARHLAEGLEVH--------------TGQRIIAIRSTPE-------GWWLAAETNAHHGPFAGVVLALPTPQAAVLLGPIAPELAAACTQRPMTPCWAACV 191          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1084822428|gb|OGQ56700.1| (hypothetical protein A3J24_04555 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8])

HSP 1 Score: 99.7525 bits (247), Expect = 1.360e-20
Identity = 79/220 (35.91%), Postives = 110/220 (50.00%), Query Frame = 0
Query:   61 VAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATA--------RYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEV-----FDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLV 266
            +AIIGAG+AGLTCAR L     T  V L+EK+    GR +TR    +G FD+GA +F+A S AF+++V  WR+AG V P      S D+  A A          R V  P M ++  HLA+GL +     + ++E                      H   W L  +  TVP       FDAVV+A PA+ + ALL P +P LA+  A V   PC ++++
Sbjct:    3 IAIIGAGLAGLTCARRLELQGNT--VILYEKNADVSGRMSTRETE-LGGFDYGAQYFTATSDAFKKEVAGWRKAGWVAPWEGKLVSLDNGVAKAAGRSGGASGQRLVAVPGMGSIGRHLAQGLDIRTEQRVKRIE---------------------SHGNQWLLAVESETVPIDASAGPFDAVVIAAPADHAAALLEP-APKLAAQAATVHLAPCWAIML 197          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|1054995278|ref|WP_066747906.1| (deoxyribodipyrimidine photolyase [Sphingomonadales bacterium EhC05] >gi|1032127261|gb|OAN99435.1| deoxyribodipyrimidine photolyase [Sphingomonadales bacterium EhC05])

HSP 1 Score: 97.4413 bits (241), Expect = 5.907e-20
Identity = 72/216 (33.33%), Postives = 108/216 (50.00%), Query Frame = 0
Query:   60 KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATR---TVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGP 271
            K AIIGAG+AGL CA  L+ S  + R  LF+K+    GR +TR   +  G  +FDHGA +F+A  P+F+  ++TW +AG+V              AA    +V  P+M      LA     H     A +E + K  G+D                GW L   +  + E FD +++A+PAEQ+  LL+P     A++ A   S PC ++++A+D P
Sbjct:    3 KFAIIGAGLAGLACADELIASGHSVR--LFDKARGPGGRMSTRRTDSASGQVSFDHGAQYFTARDPSFQSLIETWSDAGIVA----------RWPAAGADAWVGVPTMNAPVKQLA---GRHDVTWSAHIEALLK--GED----------------GWHLKFREGALIEPFDHIILAIPAEQAADLLAPTGSEFAAIAAKTVSAPCWTLMLAYDEP 185          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|936190263|ref|WP_054524461.1| (MULTISPECIES: deoxyribodipyrimidine photo-lyase [Citromicrobium] >gi|934280229|gb|KPM25683.1| deoxyribodipyrimidine photolyase [Citromicrobium sp. RCC1885] >gi|934283487|gb|KPM28925.1| deoxyribodipyrimidine photolyase [Citromicrobium sp. RCC1878] >gi|1030119712|gb|OAM09522.1| deoxyribodipyrimidine photolyase [Citromicrobium sp. RCC1897])

HSP 1 Score: 97.4413 bits (241), Expect = 6.503e-20
Identity = 81/235 (34.47%), Postives = 110/235 (46.81%), Query Frame = 0
Query:   61 VAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIG---NFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEWTADMDGEDGCVG 291
            VA+IGAG+AGLTCA  L+ +     V++F+K     GR ATR V   G    FDHGA +F+A   AF+ QV+ W   G+V P            AA    +V  P M      +AE L V     IA L                 P      +GGW L   +    + FDAVV+AVPAEQ+  LL+  +P  A     V+S PC + +VA++    AP      D   ++G +G
Sbjct:    3 VAVIGAGMAGLTCASRLVEAGHN--VAVFDKGRGPGGRMATRRVEHDGATFRFDHGAQYFTAREMAFQTQVRAWDADGIVAPWP----------AAKDGAWVGTPGMNAPIRAMAEALEVRFSTRIAGL----------------VPD-----RGGWRLEG-EGAPDDRFDAVVIAVPAEQAAPLLAVHAPDFAEDARDVKSEPCWTAMVAFESRVDAP------DTLADEGAIG 197          
BLAST of EWM22709.1 vs. NCBI_GenBank
Match: gi|589616045|gb|EXI87303.1| (protoporphyrinogen oxidase [Candidatus Accumulibacter sp. BA-93])

HSP 1 Score: 97.0561 bits (240), Expect = 1.233e-19
Identity = 78/233 (33.48%), Postives = 113/233 (48.50%), Query Frame = 0
Query:   50 IENDGGNTAPKVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTS-HGRCATRTVRGIG-NFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSP----FTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPPGHQGGWALHH-DQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAP 275
            I+ +  N  P +A+IGAGIAGL+CA  L  +     VSLF+KS S  GR +TR  RG     DHGA +F+A  PAFR +V+ W++AG+    +P    F   S         R+V  P+M     +LA  LAVH    I +                     P  H  GW +   +Q  +   F AV++AVP+ Q+  LL   +P LA+L +    R C ++++ +  P   P
Sbjct:    2 IDKEAMNYPPHIALIGAGIAGLSCATALQRA--GLEVSLFDKSRSPGGRMSTR--RGDDWQCDHGAQYFTARHPAFRAEVERWQQAGVAGVWAPRLSMFDGDSPEEREPTVERFVGMPTMTAPARYLASTLAVHARTNIQQFR-------------------PQAH--GWQVFSAEQGWLETRFAAVLLAVPSPQAVPLLQQAAPDLAALASSAVMRGCWALMLRFAAPVDLP 209          
The following BLAST results are available for this feature:
BLAST of EWM22709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103285|gb|EWM22709.1|0.000e+0100.00fad dependent oxidoreductase [Nannochloropsis gadi... [more]
gi|921027310|ref|WP_053066780.1|1.246e-2237.78FAD-dependent oxidoreductase [Archangium gephyra] ... [more]
gi|1055867928|gb|ODA35036.1|3.683e-2232.61hypothetical protein A6X21_04345 [Planctopirus sp.... [more]
gi|1178786367|ref|WP_083233409.1|3.735e-2232.61hypothetical protein [Planctopirus sp. JC280][more]
gi|502873594|ref|WP_013108570.1|1.849e-2136.79DNA photolyase FAD-binding protein [Planctopirus l... [more]
gi|1001916986|gb|KXS38082.1|1.104e-2037.38Dehydrosqualene desaturase [Halomonadaceae bacteri... [more]
gi|1084822428|gb|OGQ56700.1|1.360e-2035.91hypothetical protein A3J24_04555 [Deltaproteobacte... [more]
gi|1054995278|ref|WP_066747906.1|5.907e-2033.33deoxyribodipyrimidine photolyase [Sphingomonadales... [more]
gi|936190263|ref|WP_054524461.1|6.503e-2034.47MULTISPECIES: deoxyribodipyrimidine photo-lyase [C... [more]
gi|589616045|gb|EXI87303.1|1.233e-1933.48protoporphyrinogen oxidase [Candidatus Accumulibac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7987rna7987Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications