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Properties
| Property Name | Value |
|---|
| Product | phf20l1 protein |
| Orig transcript id | gnl|cribi|Naga_100639g1.5885.mrna |
| Orig protein id | gnl|cribi|Naga_100639g1.5885 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:284141..285490 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7984 ID=rna7984|Name=rna7984|organism=Nannochloropsis gaditana|type=mRNA|length=2672bp
TCTTGTCGTGTTGACGTCTCGCAGGCGGGGGCACGTCGAGGCTATGGTCC
CTTGCCCCGACGGCGACCGCCCACGTACCATCGCATCGAAGTGCACTCAC
ACGATTCTCCAATTCATGTTAATGCAAGAGCAGGCGCGGGGTCAGGGCAT
TAACTCCCGTTGTCCTCGTCCGCCTTACCTTAGTGGGCCGACTCCCTGCC
TCTTCAACCTCCCCCCCCTCGCTCCACCCATGCCGCCCGTCCCCCCCGCT
TCCCCCCCCGCTCTTCGGCCACCTTCCCCGCTTTCTCTCGCCCGTATCGA
TCAGGAGCAGTACCATTCGGCGACAATTGCCTCTGTGCCTCCTGAAATTG
CGGCAAGAATCGCACGATCGGAAGCGCGGGCTGAACGGAGCAAGCGCCGC
GGGTCGCGGGGGGTTGAGCTACCTGAAAACGACGTACGACGGCAGATCGG
TTGCCGTCTTATGAATTTGGGTAATTCATGCTACCAAAATTGTATTTTAC
AAATCCTGGTCAACCTTCCAGACGTGCGCCAGCGGCTCGTCGAATTTGCA
GCAGGACATACGGCCTGCGAGGAAGACTACTGCTTCCCCCGGGACCTGAG
CCGGCACGCGGTGGACGTGCCCGTGGCCGCCGCCAAGGGCCAGGCCCTGT
CTGCCAGCTGGGTCCTCAAGTATCAGCAGGCGGGAGAGGGGGTGATCGGA
GATCTCTACCGGCAGAGCGACCCCGCCTGCTTCCTCCACGGGGCCGCGGA
TTGGTGTGTTGACCGGGCCGCCGGGCCTGCCCACGCCCTCCCCCTCTTCC
ACGACCTCTTCGAGGGGGCGGCCTTCGAGCACGAGTGGGTGGACCCCGCC
TCGTTCCCGCGCTGCCCCGTCCAGCCCAAGAACCTGCACTCCCAGCCCTT
CCTCATGCTGAACATCCCCGTGCCCGCCTCGCCCTCCTCGGTGATGGCCT
GTCTGCGGGCGAGTGTCTTCGAGGACAAGGTGGTCACGGGCCGGGAGTGC
GAGGAGGAAGGATGCCCCTACGGGCGGCCGGCGGCTCGGTCGCCCCCTTC
AATGCGGAAGGAGCGGGAGGAGGCGGGGCGGGAGGAGAGTGCGGGAGGAA
GGGGCAGGAGGACGCCCCCGCCGGTGAAGGGAGGACGGGGGGGAGGGGCC
GGAGAAGGGAGCGCGACGACCCCCATGCGACGCTCTTCTCCCGCCCCTCC
CTCTCCGCGGCCTCCTCTCTCTCCCCGCTGCTCTCCGTCTCCTCCTGCCC
GGCACGACAAACACCAGCAGTTGCGCTTGGCCCACCTGCCCCGGTACGTG
TGCCTGCGGCTCCTCCGTTTCGACAACTCTTTGAAGAAGATCAGGACGCC
GGTCGCGTACGAGGAGACCATTGACTTTGGGCACTTTGTATCCAGAGAGC
AGGAAGCGGGGACGACGAAGAGGGAGGGAGGGGCCGAAGCGCACGGGGGG
GCGGGGGTGGGGGGGAAGAGGAAGAGGAGGGAGAGCGTGAAGGGAGAAGG
AGAAAGGGTCGTTCTCAGCTTGAACGCCGAGGGAGGAGAAGCGGCGGGAG
GACAGGGATTGAAAGGCGAGGAGCAAGGCGTGCGGGGCCCGTCTGAGTAT
GAGCTCATGTCAGTGGTTCTCCACCAAGGCCGCACGCGTCAGCGCGGGCA
CTACTACCTGTATCAGAGGGTTTTGGAGGGGGTAGAGGGAGGGGGGGAGA
GCGGCAAGTGGTGGCTGTTTGACGACGCCAAGCGGTATCAGGAGGTGGAA
GCGTGTCGGGTTTTGCGGGCCTCGGACGAGGTTTACATGCTTGTGTACAG
GCGGAGGGACAGGGCCGAGAAGGGGGGGCGGGGGCGGGGAAGGGGGAAGG
GGAAGGGGAGGAGCAGCAGCAAGGGGATGGAAAAGACGTCAAGCGAGAGA
AAGAAGGGGAGGCATCGATACGAATACTAGGCGGCGAGAAGTGCCGCCCT
GCCTTGTCCTCTCCCTCCATCTCTTCCTCACCCTCTTCCACTTCCTCCCT
CTCCTCCTCCTCCACGTCTTCTTCGTCCGCGTCGGCGGGGACCTCCACGT
CAGCAGCAACGGTCCTTTCCACCGGTGCGTCGGCATTGCGATGCGAGCGG
GCTGAAAACAAAGCACCGACCAGCTCGGGTCGGCTTTTCTCGGGCCCTGT
CCGCAAACGGCCCCGCCCCCTGAGTGTTCCTGTAACGGTCATGACGGACC
TGGGCAACGCATGGGATACAGCAGGGGAGGAAGCCCCAGGGGAGGAGGCA
ATTGCTTTGAAAAATCATGATTGTAAGAGGGGAAGGAGGAGTGGGAAAGG
AGATGAGCCAAAGGAGGACGCTGTACAGAAGTATGGAATCCAACCAAAAG
CGGCAGTGACGCCGAGACGGAAACGAGCGGCCTCGCGTTGACCAGAAAAT
GACGAGAGACGGGGCATATTCTTGAAAGCAATTGTTATTCGTCTTAATGC
AAATCGTCGTGAAGAAAAATTGACAACTTTCCTTTTTCTTCCATTTTCTG
TGGGCGGTTAAAAAGCTTTGCAACGTGTGTGACGGGAAGATCGGAACGGG
GAAACACAAACTTCAAGAAGCAACGCAGCTATTCTCCATAGGATTTATGC
TCCATGCTTCTTAAATGCCTGCAAATCAAAGAAATAGGGTAGAACGCCTA
ATTTTGATAACCTTCCTTACCC back to topprotein sequence of rna7984 >rna7984-protein ID=rna7984-protein|Name=rna7984|organism=Nannochloropsis gaditana|type=polypeptide|length=278bp
MTGADPPSRPPPTSLPPLLAGAGASAPSLPVPRPAVPFLMARVPSEYAQE
ACEEEDVGGEAGEAHGAGGGGGGGGGGGGGGGGGGRLGDGEDSRSFFPPL
PAPSWQSSDQHGLISASMGSGGVTGLMMAGQTAPCLVPSPPIPDTRMDTP
PFPPPSSAPYDPSDSGSHAPVSLLVAGGRSFSTACKRAKSVRTFSAGARV
DAMDLEGVWHEGVVKEVDGVQGYRVHFLGWSHRWDEWIESGSERIQPCYT
KVPNLSLPPSLPPSLPPSLPPSPLSFPP back to topmRNA from alignment at KK037247.1:284141..285490+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7984 ID=rna7984|Name=rna7984|organism=Nannochloropsis gaditana|type=mRNA|length=1350bp|location=Sequence derived from alignment at KK037247.1:284141..285490+ (Nannochloropsis gaditana)
AGGAGTAGATAATTGTTTTACGCGTACATATGTTTATCCATGGGCATGCC
TGCATTCACCCTTCGTTTGCCGAACCCGACTTACTTGCGCGTTCTTGGAA
AATGCCATGCTGTGGACAATGCGCTAGACACATGTTACTGAAGCTTTCTG
ATGATTGCAGTCTCTCGTTCCACGACTACATAGGGCATCGGTTGTGGATA
CACGTTTCTCCACCCCTGAGGGATTGAGTAAGCTTTCTGGCCGAAGTAAG
CGTGCGCGTGGAGCTAGTCTGGCATCCTGTGACACTAGTTGCAGGGGCAC
GCAACAAGACATTCCAAAAGTCGTGCCGTTCGTGGCCGTGCTCGACGTTA
TAGGACATCTTTGTTGGGTGGTAAAATGACGGGTGCAGATCCACCTTcgc
gtccccctcccacctccttacctcccctcttggcgggggcaggggcctcA
GCGCCGTCTCTCCCAGTTCCTCGACCCGCCGTTCCCTTTTTGATGGCCCG
TGTTCCAAGTGAGTACGCGCAGGAAGCctgcgaagaagaagacgttGGCG
GAGAAGCGGGTGAGGCACATggtgcaggtggtggtggtggaggaggagga
ggaggaggaggaggaggaggaggaggagggaggttagGCGACGGCGAAGA
CTCCcgctctttttttcctcctttaccCGCGCCGTCTTGGCAGTCGAGTG
ATCAGCACGGTCTCATCAGCGCTAGCATGGGCAGCGGCGGCGTTACGGGC
CTTATGATGGCAGGCCAGaccgccccctgcctcgtcccctcccccccgat
ACCCGATACTCGCATGGAcactccgcccttcccccctccctcgtccgcgC
CCTATGATCCATCCGACAGCGGCAGTCACGCCCCGGTCTCTTTGCTCGTT
GCGGGCGGTCGCAGTTTCAGCACGGCCTGCAAGCGGGCAAAGAGCGTCCG
CACCTTCTCGGCGGGAGCGCGCGTGGATGCGATGGATCTGGAAGGGGTCT
GGCACGAGGGCGTGGTCAAAGAGGTGGACGGGGTGCAGGtagggggtagg
gagggcgaATTGAGAAATAATCCTCCCACAGAAGTTTGACACCTTGACCG
gtatcccctccctccctcccttcctccctctctcccttcctccctgcctc
cctccctcctcccctccctctctcccagggATACAGGGTGCACTTCCTAG
GCTGGAGCCATCGATGGGACGAGTGGATCGAGAGCGGCTCGGAACGCATT
CAACCCTGCTACACCAAGGTACCcaatctttccctccctccctccctccc
tccctccctccctccctccctccctccttcgcctctttccttccctccct
back to topCoding sequence (CDS) from alignment at KK037247.1:284141..285490+ >rna7984 ID=rna7984|Name=rna7984|organism=Nannochloropsis gaditana|type=CDS|length=1670bp|location=Sequence derived from alignment at KK037247.1:284141..285490+ (Nannochloropsis gaditana)
ATGACGGGTGCAGATCCACCTTcgcgtccccctcccacctccttacctcc
cctcttggcgggggcaggggcctcAGCGCCGTCTCTCCCAGTTCCTCGAC
CCGCCGTTCCCTTTTTGATGGCCCGTGTTCCAAGTGAGTACGCGCAGGAA
GCctgcgaagaagaagacgttGGCGGAGAAGCGGGTGAGGCACATggtgc
aggtggtggtggtggaggaggaggaggaggaggaggaggaggaggaggag
gagggaggttagGCGACGGCGAAGACTCCcgctctttttttcctccttta
ccCGCGCCGTCTTGGCAGTCGAGTGATCAGCACGGTCTCATCAGCGCTAG
CATGGGCAGCGGCGGCGTTACGGGCCTTATGATGGCAGGCCAGaccgccc
cctgcctcgtcccctcccccccgatACCCGATACTCGCATGGAcactccg
cccttcccccctccctcgtccgcgCCCTATGATCCATCCGACAGCGGCAG
TCACGCCCCGGTCTCTTTGCTCGTTGCGGGCGGTCGCAGTTTCAGCACGG
CCTGCAAGCGGGCAAAGAGCGTCCGCACCTTCTCGGCGGGAGCGCGCGTG
GATGCGATGGATCTGGAAGGGGTCTGGCACGAGGGCGTGGTCAAAGAGGT
GGACGGGGTGCAGggATACAGGGTGCACTTCCTAGGCTGGAGCCATCGAT
GGGACGAGTGGATCGAGAGCGGCTCGGAACGCATTCAACCCTGCTACACC
AAGGTACCcaatctttccctccctccctccctccctccctccctccctcc
ctccctccctccttcgcctctttccttccctccctATGACGGGTGCAGAT
CCACCTTcgcgtccccctcccacctccttacctcccctcttggcgggggc
aggggcctcAGCGCCGTCTCTCCCAGTTCCTCGACCCGCCGTTCCCTTTT
TGATGGCCCGTGTTCCAAGTGAGTACGCGCAGGAAGCctgcgaagaagaa
gacgttGGCGGAGAAGCGGGTGAGGCACATggtgcaggtggtggtggtgg
aggaggaggaggaggaggaggaggaggaggaggaggagggaggttagGCG
ACGGCGAAGACTCCcgctctttttttcctcctttaccCGCGCCGTCTTGG
CAGTCGAGTGATCAGCACGGTCTCATCAGCGCTAGCATGGGCAGCGGCGG
CGTTACGGGCCTTATGATGGCAGGCCAGaccgccccctgcctcgtcccct
cccccccgatACCCGATACTCGCATGGAcactccgcccttcccccctccc
tcgtccgcgCCCTATGATCCATCCGACAGCGGCAGTCACGCCCCGGTCTC
TTTGCTCGTTGCGGGCGGTCGCAGTTTCAGCACGGCCTGCAAGCGGGCAA
AGAGCGTCCGCACCTTCTCGGCGGGAGCGCGCGTGGATGCGATGGATCTG
GAAGGGGTCTGGCACGAGGGCGTGGTCAAAGAGGTGGACGGGGTGCAGgg
ATACAGGGTGCACTTCCTAGGCTGGAGCCATCGATGGGACGAGTGGATCG
AGAGCGGCTCGGAACGCATTCAACCCTGCTACACCAAGGTACCcaatctt
tccctccctccctccctccctccctccctccctccctccctccctccttc
gcctctttccttccctccct back to top
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