EWM22711.1, cds7962 (CDS) Nannochloropsis gaditana

Overview
NameEWM22711.1
Unique Namecds7962
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:284516..285178 +
Alignment locationKK037247.1:285319..285490 +

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Properties
Property NameValue
End range.
End range285490
Protein idEWM22711.1
Productphf20l1 protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100639g1.5885.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:284516..285178 +
KK037247.1supercontigKK037247.1:285319..285490 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromodomain-like
Homology
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BLAST of EWM22711.1 vs. NCBI_GenBank
Match: gi|585103288|gb|EWM22711.1| (phf20l1 protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0 
Query:    1 MTGADPPSRPPPTSLPPLLAGAGASAPSLPVPRPAVPFLMARVPSEYAQEACEEEDVGGEAGEAHGAGGGGGGGGGGGGGGGGGGRLGDGEDSRSFFPPLPAPSWQSSDQHGLISASMGSGGVTGLMMAGQTAPCLVPSPPIPDTRMDTPPFPPPSSAPYDPSDSGSHAPVSLLVAGGRSFSTACKRAKSVRTFSAGARVDAMDLEGVWHEGVVKEVDGVQGYRVHFLGWSHRWDEWIESGSERIQPCYTKVPNLSLPPSLPPSLPPSLPPSPLSFPP 278
            MTGADPPSRPPPTSLPPLLAGAGASAPSLPVPRPAVPFLMARVPSEYAQEACEEEDVGGEAGEAHGAGGGGGGGGGGGGGGGGGGRLGDGEDSRSFFPPLPAPSWQSSDQHGLISASMGSGGVTGLMMAGQTAPCLVPSPPIPDTRMDTPPFPPPSSAPYDPSDSGSHAPVSLLVAGGRSFSTACKRAKSVRTFSAGARVDAMDLEGVWHEGVVKEVDGVQGYRVHFLGWSHRWDEWIESGSERIQPCYTKVPNLSLPPSLPPSLPPSLPPSPLSFPP
Sbjct:    1 MTGADPPSRPPPTSLPPLLAGAGASAPSLPVPRPAVPFLMARVPSEYAQEACEEEDVGGEAGEAHGAGGGGGGGGGGGGGGGGGGRLGDGEDSRSFFPPLPAPSWQSSDQHGLISASMGSGGVTGLMMAGQTAPCLVPSPPIPDTRMDTPPFPPPSSAPYDPSDSGSHAPVSLLVAGGRSFSTACKRAKSVRTFSAGARVDAMDLEGVWHEGVVKEVDGVQGYRVHFLGWSHRWDEWIESGSERIQPCYTKVPNLSLPPSLPPSLPPSLPPSPLSFPP 278
The following BLAST results are available for this feature:
BLAST of EWM22711.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103288|gb|EWM22711.1|0.000e+0100.00phf20l1 protein, partial [Nannochloropsis gaditana... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7984rna7984Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications