rna7982, rna7982 (mRNA) Nannochloropsis gaditana

Overview
Namerna7982
Unique Namerna7982
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationKK037247.1:279559..280526 -

Link to JBrowse

Properties
Property NameValue
Productvacuolar sorting protein
Orig transcript idgnl|cribi|Naga_100639g3.5886.mrna
Orig protein idgnl|cribi|Naga_100639g3.5886
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:279559..280526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100639g3gene7729Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22712.1cds7960Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7982rna7982-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7982 ID=rna7982|Name=rna7982|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGGCTTTATCAGATTTCTGTATCGATGCGACATTGAGCGGATCGGAACG
GATCGGAACGCCCTCTTGTCCTACACTATCTCCAACGATTCAGGGAACGT
TAGGGCCAAATCTGGTGCAGGTCATGGCGTTGGCGCATTCGGAACCAGGA
CAAGCGACAGGTTGGGCAACATTACCGATAGACCTGTTGCATCAGCTGAT
CTGA
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protein sequence of rna7982

>rna7982-protein ID=rna7982-protein|Name=rna7982|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MLALQSRAIDHSSKAVKADRAGERRRAFFHYKESLVHLIEWLKLEKAATA
RDALKVKIHGYMTRAEELKMLLDIGNGARRTTSEVECSSSPITTRADTIT
EYLCANRNQRSDECEGCDSQQASFLEGPFTMNFDAEDTLRRPNERMSLSE
DDTKKENKF
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mRNA from alignment at KK037247.1:279559..280526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7982 ID=rna7982|Name=rna7982|organism=Nannochloropsis gaditana|type=mRNA|length=968bp|location=Sequence derived from alignment at KK037247.1:279559..280526- (Nannochloropsis gaditana)
ATTTTAAAGAGCGTATATAATGCTTGCGTTGCAGTCACGGGCCATTGATC
ACTCTTCTAAAGCAGTCAAAGCCGACAGGGCAGGAGAAAGGCGCCGGGCC
TTTTTCCATTATAAGGAAAGTCTTGTACATCTGATAGAATGGTTAAAGCT
GGAGAAGGCGGCCACTGCGCGAGACGCATTGAAGGTGAAGATTCATGGCT
ACATGACACGTGCGGAAGAGCTTAAAATGCTCTTGGATATAGGAAATGGG
GCGCGTAGAACAACATCTGAGGTTGAATGCTCCTCGTCCCCCATTACCAC
GCGAGCAGACACGATAACAGAATACTTGTGCGCGAATAGGAATCAGAGAA
GTGATGAGTGCGAAGGATGCGACTCTCAACAAGCATCGTTTCTTGAAGGT
CCTTTTACTATGAATTTCGACGCAGAAGACACGCTTAGAAGGCCAAATGA
ACGAATGTCTCTTAGCGAAGATGACACCAAAAAAGAGAATAAATTTTAAT
GGGATTACAAGCACCCAATCAAGCATTCACCCCTTTCCTATCAGAGGCAA
CCCTGTCAATGCCTTCGCATGGCTCGATTATGAGTGCACGGCACTGTACG
CATTGTTAAAGATGTACTTGAAGAACTAGAAGAGAAGTTGAGGGAATGGG
AGGCATTAATGGAAAAGAATCCGGAAATCCGGAGCAGATTGAGGGAGGTG
ACAACATTCTTTTGTCATGCAAGACAAAATACATCATTTTATTTGCCAAG
TGTTGTTAAAAGCATTAAGTGCGACTGATGAACATGAGATGTGTCGCGTG
ACAGAGTATGGCTTGGAAATCGCAAAGATTTAGCAACATGCGATGCTGCG
GTCGAATTGGCAGCCAATACCAATTTATGACCAAACGTTTCTCAGCCTTC
AACACCAAGACATGCCTTCTTAAAGGAGAGGACCCAGATCTTGTCATGGC
AATTGGCCTTATGGTTCT
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Coding sequence (CDS) from alignment at KK037247.1:279559..280526-

>rna7982 ID=rna7982|Name=rna7982|organism=Nannochloropsis gaditana|type=CDS|length=480bp|location=Sequence derived from alignment at KK037247.1:279559..280526- (Nannochloropsis gaditana)
ATGCTTGCGTTGCAGTCACGGGCCATTGATCACTCTTCTAAAGCAGTCAA
AGCCGACAGGGCAGGAGAAAGGCGCCGGGCCTTTTTCCATTATAAGGAAA
GTCTTGTACATCTGATAGAATGGTTAAAGCTGGAGAAGGCGGCCACTGCG
CGAGACGCATTGAAGGTGAAGATTCATGGCTACATGACACGTGCGGAAGA
GCTTAAAATGCTCTTGGATATAGGAAATGGGGCGCGTAGAACAACATCTG
AGGTTGAATGCTCCTCGTCCCCCATTACCACGCGAGCAGACACGATAACA
GAATACTTGTGCGCGAATAGGAATCAGAGAAGTGATGAGTGCGAAGGATG
CGACTCTCAACAAGCATCGTTTCTTGAAGGTCCTTTTACTATGAATTTCG
ACGCAGAAGACACGCTTAGAAGGCCAAATGAACGAATGTCTCTTAGCGAA
GATGACACCAAAAAAGAGAATAAATTTTAA
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Synonyms
Publications