EWM22712.1, cds7960 (CDS) Nannochloropsis gaditana

Overview
NameEWM22712.1
Unique Namecds7960
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:280028..280507 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22712.1
Productvacuolar sorting protein
Orig transcript idgnl|cribi|Naga_100639g3.5886.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:280028..280507 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007330MIT
Homology
[Close]
BLAST of EWM22712.1 vs. NCBI_GenBank
Match: gi|585103289|gb|EWM22712.1| (vacuolar sorting protein [Nannochloropsis gaditana])

HSP 1 Score: 330.872 bits (847), Expect = 6.852e-115
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 
Query:    1 MLALQSRAIDHSSKAVKADRAGERRRAFFHYKESLVHLIEWLKLEKAATARDALKVKIHGYMTRAEELKMLLDIGNGARRTTSEVECSSSPITTRADTITEYLCANRNQRSDECEGCDSQQASFLEGPFTMNFDAEDTLRRPNERMSLSEDDTKKENKF 159
            MLALQSRAIDHSSKAVKADRAGERRRAFFHYKESLVHLIEWLKLEKAATARDALKVKIHGYMTRAEELKMLLDIGNGARRTTSEVECSSSPITTRADTITEYLCANRNQRSDECEGCDSQQASFLEGPFTMNFDAEDTLRRPNERMSLSEDDTKKENKF
Sbjct:    1 MLALQSRAIDHSSKAVKADRAGERRRAFFHYKESLVHLIEWLKLEKAATARDALKVKIHGYMTRAEELKMLLDIGNGARRTTSEVECSSSPITTRADTITEYLCANRNQRSDECEGCDSQQASFLEGPFTMNFDAEDTLRRPNERMSLSEDDTKKENKF 159
The following BLAST results are available for this feature:
BLAST of EWM22712.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103289|gb|EWM22712.1|6.852e-115100.00vacuolar sorting protein [Nannochloropsis gaditana... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7982rna7982Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications