rna7972, rna7972 (mRNA) Nannochloropsis gaditana

Overview
Namerna7972
Unique Namerna7972
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1815
Alignment locationKK037247.1:263247..264370 -

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Properties
Property NameValue
Productqc- syp6 tlg1p syntaxin 6 family
Orig transcript idgnl|cribi|Naga_100653g2.10306.mrna
Orig protein idgnl|cribi|Naga_100653g2.10306
GeneSNR12
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:263247..264370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SNR12gene7719Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7972rna7972-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22724.1cds7950Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7972 ID=rna7972|Name=rna7972|organism=Nannochloropsis gaditana|type=mRNA|length=1815bp
CACAAGTGCTTGCTCCAAAGCGCAGGTTTGGGATAAATTCCTGCTGACGC
AACGCGCGGACTAAAGCCATCGCATCGGCAGATACCCGGGCACGGACCTT
GGTCAGGTTTGCGTTGGCCGAATGGCAAGGCAAAATATGCATCGATAAAG
CTACAAGAATGGTACAATGGGTTTCCGGCGTGCGAAAAATGATTTAATTC
ATAGCCACCATGAACAAGGATAACTCCGTCCACCAGGTCAGTATCCGACT
GCTCGCTCCCCCTCCCTTCCCTTGCTCACCCTCAGATTCATCCATGATCT
TGCCCGCAGGTTCCTGATACACCCGTCCTCGTCGATGCCTTCCGCAAGTA
TCACTGCCCCGCCGTCGGAAGCCGTGCCCAAGCCCTGTTTTTCCTCTCCC
ATTACCACGCAGATCACTATCAAGGACTGAGTATGGAGTGGTCCACGGGT
GTGATATATTGCTCAACCATCACAGCCCGTCTTTTGACAAATATCATGGG
TGTGCAGGCTCAATACGTGCGCGCCTTGCCCATGCATGAAGAGGTGCCTC
TGCCATGGAATCCGGGGAGGGGCGGACGCGAGGAGGGAGGTTTGAGCGTG
ACGTTGCTCGACGCTAATCATTGCCCGGGGGCCTGCATGTTGCTCTTCAG
GGTCCGGACATGCCGAGGAAGCAGTACGAGGTGCAACGGTGACCACAGCC
GTGGAGCGGAGGTCAGTGGGAGGGAGAGGGACGACGAATTTACGCTTCAT
TTGCACTGTGGGGACATGCGCTACCACCCCAGAATGCTGCACTACGCCGC
TCTCCTGCACGACACCACCGCCTCCCATCCTCCGCGACCGGCCCGTCCTC
GCAAGCTCGACACGATCTACCTGGACACAACCTATGCGCACCCTAAACAC
GCCTTTGCTGCTCAGGAGGATGCGATCCAGAGCGTGGGAGACTTGATCTT
GGCCCGCCTGAGGAAGGAAGGGAGGGAGGTCGCACCCGGCGTCCCTCCTA
CCACAGCCACGACCTCGAACAACCCAAAGAGAGGGACCCTAGCCAGGCAA
TGTTCTCCTTCTTCCACCACGTCCTCTTCCCCTCCCCCTCTCCCTCCCTT
CCTTCCTCCCCCGTCCGCCCCTTCCCCTCGCCCCAAGACTCTCTTCCTCC
TCAGCGCCTACAGCATCGGCAAGGAGCGTCTGCTCCTGGAAGTTGCTCGC
CGCACCCGCCTTCCCATCTATGTCGACGAGGCGAAGATGAAGATACTGGA
ATGCTTGGATCTGCCCCCCTCCCGCCCGCCCTCCCCCCCTTCCTCCCTCC
CGCCCTCCCCCTTCACCACGGACAAGACGGAGACCTGTGTCCACGTCTGC
CGCATGGGATTCTGCGGGGAGATGTGGCCCTTTTTCAAACCCAATTTCTC
CAATTTGGAGAAGAAATTGGAGGAGGAAGCGAGGGAGGGAGGGGGCTACA
CACGTGTCTACGCCTTCATCCCTACAGGGTGGGCGGAAAGCAGCAACTTC
AACCGGCGCAACGCCGTGCGGGAGAAAGGGGGGGGGGGGTCGGTGGAGGG
AGGGAAAGAGGGAGGGGGGGAGGCGAGAATCAAGGTGCAGCTGATACCGT
ACAGCGAACACACGCCCTTCGCGGATTTATTGGACTTTGTCGGGTATTTG
CGACCGAGGCGGGTTGTGCCCACGGTGTGGAGCGACGCGAAGGAGAAGGA
CAGGATCCTCCGACGCTTTCGAGGGGTGCTGGACGACGCGGAGGGGAAGA
GAGCATTTCTCTCCTTGTTCGGGAAGAGGGGGGGGGACGGAGCGCGGGAG
GGAAGGGGGGAGTGA
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protein sequence of rna7972

>rna7972-protein ID=rna7972-protein|Name=rna7972|organism=Nannochloropsis gaditana|type=polypeptide|length=258bp
MQVARSKEYTTQILTSAQRSIAILHLTVHPAKAFQLVVPMAFTAQEWTEE
YGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQN
PGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAAS
GGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGI
HHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILV
LLLVIGFT
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mRNA from alignment at KK037247.1:263247..264370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7972 ID=rna7972|Name=rna7972|organism=Nannochloropsis gaditana|type=mRNA|length=1124bp|location=Sequence derived from alignment at KK037247.1:263247..264370- (Nannochloropsis gaditana)
ATGCAAGTAGCACGGTCAAAGGAATATACGACCCAGATTCTTACCTCCGC
ACAACGCTCAATTGCAATCCTGCACCTAACAGTCCACCCGGCCAAAGCTT
TTCAGTTGGTCGTTCCTATGGCGTTTACGGCGCAGGAGTGGACGGAGGAA
TATGGCCGGGTGAAGACTTCTGCCATAGATCTACGCGCCTCGTTCGCAAC
CCCTTCGTCCTCTTCTTCCAATCCATCGACGCAACAATTGGCTAATCTAG
AGCAGAGCGTCGACAAGCTGGACTATCGATTGGGAACCATGGAGCAAAAT
CCTGGGCAATTCGGCATGTGAGTGCGACAAAGGAGAGGCGAGGCGCACAG
AGAGAGGGAGAAAGCCCATTTTGATCCCGTATGAAAGCCATTGAAACGGA
TCCGCGAGGCAATAACAGACATGGGCAGGGTGTGTCGATTTGTTGTGGTC
GGCGGATGCACAGTTCTCTTGACGTCTTTCTTTTTGTCTCTCCTACTCTC
CCTCCCCTCCTCGCTCCCTTTTCCCTCTTACCCTCACCCCTCTCTGCTTT
CCTCCCATCCCTCCTCCTAGTTCCCAATCGGACGTGGTCCGTCGTCGAGA
GCTGGTCAAGGGGTTGCGTCATCAGCTGTCCCTCCTTGGCACCAGCAGCC
ACGGCACCAACGGCCTGGTCACTGGGACTACTCGCGACGGCTCGGCGGCT
TCGGGTGGTGGAGGAGTACCCGGAGGCCTCCGCACCCTCGCACAGCAGCG
TCGAGAGATCATACACGAGCAAGACGAGCTCCTGGAGGACCTGGGGAAGG
GCGTGGACCGGCTGAAAATGCAGGGCCTGGTGATCCGGGACGAAACTGGG
ATCCACCACAAGCTGCTGGAAGACATCGACGGGGACGTGGAGGCGGCGGC
TTCGTCTTTGCGCATGGAAGCTCGACATGCCCAGCGGATACGCGAGCAAA
GCACGGTGTGTCGTTTGTACATTTGCATCGCTATTTTGCTGATCATCTTA
GTCCTGCTCTTGGTGATTGGCTTCACGTAGCTGAAAAGGGCAGGTTTGGG
AAGAACAACGAACGGGTTGCTTCAAGAGCAGACTTTGTAAAGAAAGAATG
AAATTTCACAGATTCCTTTTGATT
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Coding sequence (CDS) from alignment at KK037247.1:263247..264370-

>rna7972 ID=rna7972|Name=rna7972|organism=Nannochloropsis gaditana|type=CDS|length=1554bp|location=Sequence derived from alignment at KK037247.1:263247..264370- (Nannochloropsis gaditana)
TTCCCAATCGGACGTGGTCCGTCGTCGAGAGCTGGTCAAGGGGTTGCGTC
ATCAGCTGTCCCTCCTTGGCACCAGCAGCCACGGCACCAACGGCCTGGTC
ACTGGGACTACTCGCGACGGCTCGGCGGCTTCGGGTGGTGGAGGAGTACC
CGGAGGCCTCCGCACCCTCGCACAGCAGCGTCGAGAGATCATACACGAGC
AAGACGAGCTCCTGGAGGACCTGGGGAAGGGCGTGGACCGGCTGAAAATG
CAGGGCCTGGTGATCCGGGACGAAACTGGGATCCACCACAAGCTGCTGGA
AGACATCGACGGGGACGTGGAGGCGGCGGCTTCGTCTTTGCGCATGGAAG
CTCGACATGCCCAGCGGATACGCGAGCAAAGCACGGTGTGTCGTTTGTAC
ATTTGCATCGCTATTTTGCTGATCATCTTAGTCCTGCTCTTGGTGATTGG
CTTCACGTAGATGCAAGTAGCACGGTCAAAGGAATATACGACCCAGATTC
TTACCTCCGCACAACGCTCAATTGCAATCCTGCACCTAACAGTCCACCCG
GCCAAAGCTTTTCAGTTGGTCGTTCCTATGGCGTTTACGGCGCAGGAGTG
GACGGAGGAATATGGCCGGGTGAAGACTTCTGCCATAGATCTACGCGCCT
CGTTCGCAACCCCTTCGTCCTCTTCTTCCAATCCATCGACGCAACAATTG
GCTAATCTAGAGCAGAGCGTCGACAAGCTGGACTATCGATTGGGAACCAT
GGAGCAAAATCCTGGGCAATTCGGCATTTCCCAATCGGACGTGGTCCGTC
GTCGAGAGCTGGTCAAGGGGTTGCGTCATCAGCTGTCCCTCCTTGGCACC
AGCAGCCACGGCACCAACGGCCTGGTCACTGGGACTACTCGCGACGGCTC
GGCGGCTTCGGGTGGTGGAGGAGTACCCGGAGGCCTCCGCACCCTCGCAC
AGCAGCGTCGAGAGATCATACACGAGCAAGACGAGCTCCTGGAGGACCTG
GGGAAGGGCGTGGACCGGCTGAAAATGCAGGGCCTGGTGATCCGGGACGA
AACTGGGATCCACCACAAGCTGCTGGAAGACATCGACGGGGACGTGGAGG
CGGCGGCTTCGTCTTTGCGCATGGAAGCTCGACATGCCCAGCGGATACGC
GAGCAAAGCACGGTGTGTCGTTTGTACATTTGCATCGCTATTTTGCTGAT
CATCTTAGTCCTGCTCTTGGTGATTGGCTTCACGTAGATGCAAGTAGCAC
GGTCAAAGGAATATACGACCCAGATTCTTACCTCCGCACAACGCTCAATT
GCAATCCTGCACCTAACAGTCCACCCGGCCAAAGCTTTTCAGTTGGTCGT
TCCTATGGCGTTTACGGCGCAGGAGTGGACGGAGGAATATGGCCGGGTGA
AGACTTCTGCCATAGATCTACGCGCCTCGTTCGCAACCCCTTCGTCCTCT
TCTTCCAATCCATCGACGCAACAATTGGCTAATCTAGAGCAGAGCGTCGA
CAAGCTGGACTATCGATTGGGAACCATGGAGCAAAATCCTGGGCAATTCG
GCAT
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Synonyms
Publications