EWM22724.1, cds7950 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|585103307|gb|EWM22724.1| (qc- syp6 tlg1p syntaxin 6 family [Nannochloropsis gaditana]) HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query: 1 MQVARSKEYTTQILTSAQRSIAILHLTVHPAKAFQLVVPMAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 258
MQVARSKEYTTQILTSAQRSIAILHLTVHPAKAFQLVVPMAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT
Sbjct: 1 MQVARSKEYTTQILTSAQRSIAILHLTVHPAKAFQLVVPMAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 258
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|553193846|ref|XP_005855843.1| (hypothetical protein NGA_0569400 [Nannochloropsis gaditana CCMP526] >gi|422293216|gb|EKU20516.1| hypothetical protein NGA_0569400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 444.121 bits (1141), Expect = 5.608e-157 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query: 40 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 258
MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT
Sbjct: 1 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 219
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|299115132|emb|CBN75499.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 95.5153 bits (236), Expect = 6.702e-21 Identity = 62/161 (38.51%), Postives = 92/161 (57.14%), Query Frame = 0
Query: 97 MEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGF 257
ME+ P F + Q ++ RRR + L ++ G G R G A+ G G + +Q+RE + E D +L DLG+GV RLK Q ++I +ET +H +LL+D++GD E A+S L EARHA++IRE+S LY+ I +L IIL +L+ G
Sbjct: 1 MERRPVDFAVGQGELARRRAALDTLHREV--------GAVRGSMGGGRGGGTAAVGAAGGSGGMSRLEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSGL 153
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|1173942067|gb|OQR91125.1| (hypothetical protein ACHHYP_04962 [Achlya hypogyna]) HSP 1 Score: 92.4337 bits (228), Expect = 3.749e-19 Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 0
Query: 69 SSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQL-SLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
SS+S+N T L+QSV KL + P ++ +RRRE L+K L Q SLL T N TGT G V G + L Q +++ +QD++L +G GV LK I+DET +HH+LL+D++ D++ A L E A+ + ++S+ RLY+ I +L ILV LVIG
Sbjct: 33 SSASANLGTSVFG-LQQSVAKLRRDFDALTAKPTPNAVATPQEIRRREDLLKTLEGQTASLLNT----YNSRATGT-------KGASTVEAGAQMLRIQN-QMMQDQDDVLVAIGSGVSNLKNYSFAIKDETDLHHRLLDDMNKDIDQATVGLESEGDRAEYVAKRSSNFRLYLAILVLSCILVFELVIG 209
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|813199392|ref|XP_012209267.1| (hypothetical protein SPRG_14181 [Saprolegnia parasitica CBS 223.65] >gi|641525590|gb|KDO20033.1| hypothetical protein SPRG_14181 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 87.8113 bits (216), Expect = 2.095e-17 Identity = 69/216 (31.94%), Postives = 109/216 (50.46%), Query Frame = 0
Query: 43 TAQEWTEEYGRVKTSAIDLRA-SFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
+A W+ R++ + + ++ S +S+++N T A L+QS KL M P ++ +RRRE L+K L Q S L T+ N GT G V G + L Q +++ +QD+ L +G GV LK I+DET +HH+LL+D++ D++ A L E A+ + ++S+ RLY+ I +L ILV LVIG
Sbjct: 6 SAAAWSAWMDRLENARVSQQSLSSMVRTSAATNLGTSVFA-LQQSAAKLRRDFDAMTAVPTSNAVATPQEIRRREDLLKTLEAQTSALLTT---YNSRAQGT-------RGASTVEAGSQMLRIQN-QMMQDQDDQLAIIGSGVANLKHFSFAIKDETDLHHRLLDDMNQDIDRATVGLESEGDRAELVAKRSSNFRLYLAILVLSAILVFELVIG 209
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|1173943598|gb|OQR92430.1| (hypothetical protein THRCLA_08707 [Thraustotheca clavata]) HSP 1 Score: 87.4261 bits (215), Expect = 3.106e-17 Identity = 65/189 (34.39%), Postives = 100/189 (52.91%), Query Frame = 0
Query: 69 SSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
S++S+N + A L+QS+ KL TM P ++ +RRRE +K L Q ++L + N V G SA +G L + + +++ +QDE L +G GV LK L I+DET +HH+LL+DI+ D++ A L E A+ + ++S+ RLY+ I +L ILV LVIG
Sbjct: 33 SNASTNMGSSVFA-LQQSLAKLRRDFNTMTSVPTANSVATPQEIRRREEQLKVLEGQTTVL---LNAYNSQVQGKNGATSAEAGA--------QLLRIQNQMMQDQDEQLSIIGSGVANLKHYSLAIKDETDLHHRLLDDINQDIDRATVGLESEGDRAELVAKRSSNFRLYMAIIVLSAILVFELVIG 209
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|669148968|ref|XP_008610046.1| (hypothetical protein SDRG_06065 [Saprolegnia diclina VS20] >gi|530738383|gb|EQC36625.1| hypothetical protein SDRG_06065 [Saprolegnia diclina VS20]) HSP 1 Score: 85.1149 bits (209), Expect = 1.803e-16 Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = 0
Query: 69 SSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
+S+++N T A L+QS KL M P ++ +RRRE L+K L Q S L T+ N GT G V G + L Q +++ +QD+ L +G GV LK I+DET +HH+LL+D++ D++ A L E A+ + ++S+ RLY+ I +L ILV LVIG
Sbjct: 33 TSAATNLGTSVFA-LQQSAAKLRRDFDAMTAVPTSNAVATPQEIRRREDLLKTLEGQTSALLTT---YNSRAQGT-------RGASTVEAGSQMLRIQN-QMMQDQDDQLAIIGSGVANLKHFSFAIKDETDLHHRLLDDMNQDIDRATLGLESEGDRAELVAKRSSNFRLYLAILVLSAILVFELVIG 209
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|224004360|ref|XP_002295831.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585863|gb|ACI64548.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 83.9593 bits (206), Expect = 3.486e-16 Identity = 59/196 (30.10%), Postives = 104/196 (53.06%), Query Frame = 0
Query: 47 WTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICI 242
W +Y R+ +A LR + +T S+ S++ Q ++++ V++LD +L +E G ++ +++ RRR L+ GLR QL G S G R G +++ + +QD+++++L GV RLK Q +I ET H +LL+++D +V+ A L E R A R+RE+S+V +L++ I
Sbjct: 8 WDNDYARLARAASQLRTTSSTNSTFSNDQRQGQASSIQTGVNRLDAQLNALE---GNLTMTPAEIGRRRNLLDGLRGQLGSSGASQ-------PGYGRGGESSTAAA----------------LRQQDDMIDELAVGVGRLKNQTNLIHQETNAHVRLLDEMDTNVDLANQGLEDETRRAMRLREESSVWKLHLII 177
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|673037250|ref|XP_008872586.1| (hypothetical protein H310_08561 [Aphanomyces invadans] >gi|574472152|gb|ETV99158.1| hypothetical protein H310_08561 [Aphanomyces invadans]) HSP 1 Score: 83.1889 bits (204), Expect = 9.190e-16 Identity = 66/212 (31.13%), Postives = 106/212 (50.00%), Query Frame = 0
Query: 47 WTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQL-SLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
W + +TS +L S S ++SN T A L+QS+ +L M P ++ +RRRE L++ L Q SLL ++ T G G + G + L Q +I+ +QD+ L +G+GV LK L +++E +H +LL+DI+ +V+ A + L E AQ + ++S+ RLY+ I +L ILV L+IG
Sbjct: 14 WLDRLENARTSEQNL--SLKIRSGNTSNIGTSVFA-LQQSMSRLRREYDAMTSGPTSNAVATPQEIRRREDLLRNLETQTKSLLAAYNNRTQG-----------TKGSSSLESGAQMLRVQN-QIMLDQDDQLHLIGQGVSNLKQYSLAVKNEADLHVRLLDDINIEVDRATTGLESEGDRAQVLAKKSSNFRLYLAIVVLSAILVFELIIG 210
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|698813018|ref|XP_009839538.1| (hypothetical protein H257_13649 [Aphanomyces astaci] >gi|574105351|gb|ETV70875.1| hypothetical protein H257_13649 [Aphanomyces astaci]) HSP 1 Score: 81.6481 bits (200), Expect = 6.758e-15 Identity = 70/223 (31.39%), Postives = 110/223 (49.33%), Query Frame = 0
Query: 47 WTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQ----LSLLGTSSHGTNGLV------TGTTRDGSAASGG--GGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
W + +TS +L S S + +N T A L+QSV +L +M ++ +RRRE L++ L Q L+ + GT GLV T D A + + G + L Q +I+ +QD+ L +G+GV LK L +++ET +H +LL+DI+ DV+ A + L E AQ + ++S+ RLY+ I +L ILV L+IG
Sbjct: 14 WLDRLENARTSEKNL--STKIRSGNVANLGTSVFA-LQQSVSRLRREFDSMTSGSTTNAVATPQELRRREDLLRDLETQTRSLLAAYNNRAQGTKGLVKIFSPINSCTIDDDADTWNRSSTLESGAQMLRVQN-QIMLDQDDQLSLIGQGVSNLKQYSLSVKNETDLHVRLLDDINVDVDRATTGLEAEGDRAQILAKKSSNFRLYLAIVVLTAILVFELIIG 232 The following BLAST results are available for this feature:
BLAST of EWM22724.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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