EWM22724.1, cds7950 (CDS) Nannochloropsis gaditana

Overview
NameEWM22724.1
Unique Namecds7950
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:264054..264370 -
Alignment locationKK037247.1:263341..263800 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22724.1
Productqc- syp6 tlg1p syntaxin 6 family
Orig transcript idgnl|cribi|Naga_100653g2.10306.mrna
GeneSNR12
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:264054..264370 -
KK037247.1supercontigKK037247.1:263341..263800 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
Homology
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|585103307|gb|EWM22724.1| (qc- syp6 tlg1p syntaxin 6 family [Nannochloropsis gaditana])

HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query:    1 MQVARSKEYTTQILTSAQRSIAILHLTVHPAKAFQLVVPMAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 258
            MQVARSKEYTTQILTSAQRSIAILHLTVHPAKAFQLVVPMAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT
Sbjct:    1 MQVARSKEYTTQILTSAQRSIAILHLTVHPAKAFQLVVPMAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 258          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|553193846|ref|XP_005855843.1| (hypothetical protein NGA_0569400 [Nannochloropsis gaditana CCMP526] >gi|422293216|gb|EKU20516.1| hypothetical protein NGA_0569400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 444.121 bits (1141), Expect = 5.608e-157
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query:   40 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 258
            MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT
Sbjct:    1 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 219          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|299115132|emb|CBN75499.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 6.702e-21
Identity = 62/161 (38.51%), Postives = 92/161 (57.14%), Query Frame = 0
Query:   97 MEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGF 257
            ME+ P  F + Q ++ RRR  +  L  ++        G      G  R G  A+ G     G  +  +Q+RE + E D +L DLG+GV RLK Q ++I +ET +H +LL+D++GD E A+S L  EARHA++IRE+S    LY+ I +L IIL +L+  G 
Sbjct:    1 MERRPVDFAVGQGELARRRAALDTLHREV--------GAVRGSMGGGRGGGTAAVGAAGGSGGMSRLEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSGL 153          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|1173942067|gb|OQR91125.1| (hypothetical protein ACHHYP_04962 [Achlya hypogyna])

HSP 1 Score: 92.4337 bits (228), Expect = 3.749e-19
Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 0
Query:   69 SSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQL-SLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
            SS+S+N  T     L+QSV KL      +   P    ++    +RRRE L+K L  Q  SLL T     N   TGT        G   V  G + L  Q  +++ +QD++L  +G GV  LK     I+DET +HH+LL+D++ D++ A   L  E   A+ + ++S+  RLY+ I +L  ILV  LVIG
Sbjct:   33 SSASANLGTSVFG-LQQSVAKLRRDFDALTAKPTPNAVATPQEIRRREDLLKTLEGQTASLLNT----YNSRATGT-------KGASTVEAGAQMLRIQN-QMMQDQDDVLVAIGSGVSNLKNYSFAIKDETDLHHRLLDDMNKDIDQATVGLESEGDRAEYVAKRSSNFRLYLAILVLSCILVFELVIG 209          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|813199392|ref|XP_012209267.1| (hypothetical protein SPRG_14181 [Saprolegnia parasitica CBS 223.65] >gi|641525590|gb|KDO20033.1| hypothetical protein SPRG_14181 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 87.8113 bits (216), Expect = 2.095e-17
Identity = 69/216 (31.94%), Postives = 109/216 (50.46%), Query Frame = 0
Query:   43 TAQEWTEEYGRVKTSAIDLRA-SFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
            +A  W+    R++ + +  ++ S    +S+++N  T   A L+QS  KL      M   P    ++    +RRRE L+K L  Q S L T+    N    GT        G   V  G + L  Q  +++ +QD+ L  +G GV  LK     I+DET +HH+LL+D++ D++ A   L  E   A+ + ++S+  RLY+ I +L  ILV  LVIG
Sbjct:    6 SAAAWSAWMDRLENARVSQQSLSSMVRTSAATNLGTSVFA-LQQSAAKLRRDFDAMTAVPTSNAVATPQEIRRREDLLKTLEAQTSALLTT---YNSRAQGT-------RGASTVEAGSQMLRIQN-QMMQDQDDQLAIIGSGVANLKHFSFAIKDETDLHHRLLDDMNQDIDRATVGLESEGDRAELVAKRSSNFRLYLAILVLSAILVFELVIG 209          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|1173943598|gb|OQR92430.1| (hypothetical protein THRCLA_08707 [Thraustotheca clavata])

HSP 1 Score: 87.4261 bits (215), Expect = 3.106e-17
Identity = 65/189 (34.39%), Postives = 100/189 (52.91%), Query Frame = 0
Query:   69 SSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
            S++S+N  +   A L+QS+ KL     TM   P    ++    +RRRE  +K L  Q ++L    +  N  V G     SA +G          L + + +++ +QDE L  +G GV  LK   L I+DET +HH+LL+DI+ D++ A   L  E   A+ + ++S+  RLY+ I +L  ILV  LVIG
Sbjct:   33 SNASTNMGSSVFA-LQQSLAKLRRDFNTMTSVPTANSVATPQEIRRREEQLKVLEGQTTVL---LNAYNSQVQGKNGATSAEAGA--------QLLRIQNQMMQDQDEQLSIIGSGVANLKHYSLAIKDETDLHHRLLDDINQDIDRATVGLESEGDRAELVAKRSSNFRLYMAIIVLSAILVFELVIG 209          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|669148968|ref|XP_008610046.1| (hypothetical protein SDRG_06065 [Saprolegnia diclina VS20] >gi|530738383|gb|EQC36625.1| hypothetical protein SDRG_06065 [Saprolegnia diclina VS20])

HSP 1 Score: 85.1149 bits (209), Expect = 1.803e-16
Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = 0
Query:   69 SSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
            +S+++N  T   A L+QS  KL      M   P    ++    +RRRE L+K L  Q S L T+    N    GT        G   V  G + L  Q  +++ +QD+ L  +G GV  LK     I+DET +HH+LL+D++ D++ A   L  E   A+ + ++S+  RLY+ I +L  ILV  LVIG
Sbjct:   33 TSAATNLGTSVFA-LQQSAAKLRRDFDAMTAVPTSNAVATPQEIRRREDLLKTLEGQTSALLTT---YNSRAQGT-------RGASTVEAGSQMLRIQN-QMMQDQDDQLAIIGSGVANLKHFSFAIKDETDLHHRLLDDMNQDIDRATLGLESEGDRAELVAKRSSNFRLYLAILVLSAILVFELVIG 209          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|224004360|ref|XP_002295831.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585863|gb|ACI64548.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 83.9593 bits (206), Expect = 3.486e-16
Identity = 59/196 (30.10%), Postives = 104/196 (53.06%), Query Frame = 0
Query:   47 WTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICI 242
            W  +Y R+  +A  LR + +T S+ S++    Q ++++  V++LD +L  +E   G   ++ +++ RRR L+ GLR QL   G S         G  R G +++                   + +QD+++++L  GV RLK Q  +I  ET  H +LL+++D +V+ A   L  E R A R+RE+S+V +L++ I
Sbjct:    8 WDNDYARLARAASQLRTTSSTNSTFSNDQRQGQASSIQTGVNRLDAQLNALE---GNLTMTPAEIGRRRNLLDGLRGQLGSSGASQ-------PGYGRGGESSTAAA----------------LRQQDDMIDELAVGVGRLKNQTNLIHQETNAHVRLLDEMDTNVDLANQGLEDETRRAMRLREESSVWKLHLII 177          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|673037250|ref|XP_008872586.1| (hypothetical protein H310_08561 [Aphanomyces invadans] >gi|574472152|gb|ETV99158.1| hypothetical protein H310_08561 [Aphanomyces invadans])

HSP 1 Score: 83.1889 bits (204), Expect = 9.190e-16
Identity = 66/212 (31.13%), Postives = 106/212 (50.00%), Query Frame = 0
Query:   47 WTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQL-SLLGTSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
            W +     +TS  +L  S    S ++SN  T   A L+QS+ +L      M   P    ++    +RRRE L++ L  Q  SLL   ++ T G             G   +  G + L  Q  +I+ +QD+ L  +G+GV  LK   L +++E  +H +LL+DI+ +V+ A + L  E   AQ + ++S+  RLY+ I +L  ILV  L+IG
Sbjct:   14 WLDRLENARTSEQNL--SLKIRSGNTSNIGTSVFA-LQQSMSRLRREYDAMTSGPTSNAVATPQEIRRREDLLRNLETQTKSLLAAYNNRTQG-----------TKGSSSLESGAQMLRVQN-QIMLDQDDQLHLIGQGVSNLKQYSLAVKNEADLHVRLLDDINIEVDRATTGLESEGDRAQVLAKKSSNFRLYLAIVVLSAILVFELIIG 210          
BLAST of EWM22724.1 vs. NCBI_GenBank
Match: gi|698813018|ref|XP_009839538.1| (hypothetical protein H257_13649 [Aphanomyces astaci] >gi|574105351|gb|ETV70875.1| hypothetical protein H257_13649 [Aphanomyces astaci])

HSP 1 Score: 81.6481 bits (200), Expect = 6.758e-15
Identity = 70/223 (31.39%), Postives = 110/223 (49.33%), Query Frame = 0
Query:   47 WTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRE-LVKGLRHQ----LSLLGTSSHGTNGLV------TGTTRDGSAASGG--GGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 256
            W +     +TS  +L  S    S + +N  T   A L+QSV +L     +M        ++    +RRRE L++ L  Q    L+     + GT GLV         T D  A +      +  G + L  Q  +I+ +QD+ L  +G+GV  LK   L +++ET +H +LL+DI+ DV+ A + L  E   AQ + ++S+  RLY+ I +L  ILV  L+IG
Sbjct:   14 WLDRLENARTSEKNL--STKIRSGNVANLGTSVFA-LQQSVSRLRREFDSMTSGSTTNAVATPQELRRREDLLRDLETQTRSLLAAYNNRAQGTKGLVKIFSPINSCTIDDDADTWNRSSTLESGAQMLRVQN-QIMLDQDDQLSLIGQGVSNLKQYSLSVKNETDLHVRLLDDINVDVDRATTGLEAEGDRAQILAKKSSNFRLYLAIVVLTAILVFELIIG 232          
The following BLAST results are available for this feature:
BLAST of EWM22724.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103307|gb|EWM22724.1|0.000e+0100.00qc- syp6 tlg1p syntaxin 6 family [Nannochloropsis ... [more]
gi|553193846|ref|XP_005855843.1|5.608e-157100.00hypothetical protein NGA_0569400 [Nannochloropsis ... [more]
gi|299115132|emb|CBN75499.1|6.702e-2138.51Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|1173942067|gb|OQR91125.1|3.749e-1935.79hypothetical protein ACHHYP_04962 [Achlya hypogyna... [more]
gi|813199392|ref|XP_012209267.1|2.095e-1731.94hypothetical protein SPRG_14181 [Saprolegnia paras... [more]
gi|1173943598|gb|OQR92430.1|3.106e-1734.39hypothetical protein THRCLA_08707 [Thraustotheca c... [more]
gi|669148968|ref|XP_008610046.1|1.803e-1634.39hypothetical protein SDRG_06065 [Saprolegnia dicli... [more]
gi|224004360|ref|XP_002295831.1|3.486e-1630.10predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|673037250|ref|XP_008872586.1|9.190e-1631.13hypothetical protein H310_08561 [Aphanomyces invad... [more]
gi|698813018|ref|XP_009839538.1|6.758e-1531.39hypothetical protein H257_13649 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7972rna7972Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications