rna7971, rna7971 (mRNA) Nannochloropsis gaditana

Overview
Namerna7971
Unique Namerna7971
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1005
Alignment locationKK037247.1:260967..262781 -

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Properties
Property NameValue
Productdna ligase
Orig transcript idgnl|cribi|Naga_100653g1.10304.mrna
Orig protein idgnl|cribi|Naga_100653g1.10304
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:260967..262781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100653g1gene7718Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22722.1cds7949Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7971rna7971-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7971 ID=rna7971|Name=rna7971|organism=Nannochloropsis gaditana|type=mRNA|length=1005bp
GCCCTCGGAGTCGCGTCCTTCCGTCGTCCTTTTCCTCCCTTGGCTTTTTT
CCCACCACACCGCCTTCTCCTCCCTCCCCCCCCCCTTTCTTTCCTGCACA
GAGGTGCTCAAGTTCGGGAGCATGATCGTGGACGCCCTCGTCGCTTTCGC
GCAGCCCATCTTCGTCTACATCCCCCCCCAGGCCGAGCTCCGGGGCGGGG
CCTGGGTGGTGGTCGATCCCACCATACACGCCGAGGCGATGGAGATGTAC
GCAGCGACGGCCTCCCGGGGAGGGGTCCTGGAGCCCAACGGAGCGGCGGA
GATCAAGTTCAGGGAGAAGGACTACGTGGCGGCGGCGCATCGCTTGGACC
CAGTCTTGCGGGCGATGGACGCGAAGATGGAGCTCTTGGAGGCGGCGGGG
GAGGTGGAGGGGGAAGAAGGAAAGCAGCTGCGAAGGGAGAGGAAGGACCG
GGAGGACGCTCTCAAAGGCATCTACGCCCAAGTGGCGGTGCAATTTGCCG
ACTTGCACGACACGCCGGGGCGGATGGAGGCCGTCGGGGTCATTCGAAAG
GTGGTGCCCTGGGGCCAGGCCCGCTCCTTCTTCTACTGGCGCCTGCGCCG
TCGTTTGGCCGAATTCCACCTCCGCAAGGAAGTGTTGAAAGCCGTGGATG
GGAAGGAAGGGGGGAAGGAGGGCGGAATGACCTTGTTGCAGGCGTCCGCT
CTCCTCAAGAGCTGGTTCGTCGCCACCCCGGGAAAATCCACGGAGGGCTG
GGAGGAGGACAGGGAGGTCTTGGGGTGGATGGCGGAACATCAGGGGATCG
AGGAGCGGATTCGGGCGCTGGCCCAGGGGCGGGTGGCGAAGGAAGTGGCT
TCGCTGGCCGCGGTGAGCACGCAGGGCGCGGTGGATGGGCTCAAGCATGT
CCTTAAGACGCTCCCGGCGGAGCACCGGGCGGCGCTACTGGCGGCATTGA
AGGAGTAGGAAGGAGGCGGGAGAAGAAGCTTAGAGGAAAAGTCGGAAAGG
GGGGG
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protein sequence of rna7971

>rna7971-protein ID=rna7971-protein|Name=rna7971|organism=Nannochloropsis gaditana|type=polypeptide|length=460bp
MEWSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGRE
EGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERD
DEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTT
YAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKR
GTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERL
LLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTE
TCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGW
AESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLL
DFVGYLRPRRVVPTVWSDAKEKDRILRRFRGVLDDAEGKRAFLSLFGKRG
GDGAREGRGE
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mRNA from alignment at KK037247.1:260967..262781-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7971 ID=rna7971|Name=rna7971|organism=Nannochloropsis gaditana|type=mRNA|length=1815bp|location=Sequence derived from alignment at KK037247.1:260967..262781- (Nannochloropsis gaditana)
CACAAGTGCTTGCTCCAAAGCGCAGGTTTGGGATAAATTCCTGCTGACGC
AACGCGCGGACTAAAGCCATCGCATCGGCAGATACCCGGGCACGGACCTT
GGTCAGGTTTGCGTTGGCCGAATGGCAAGGCAAAATATGCATCGATAAAG
CTACAAGAATGGTACAATGGGTTTCCGGCGTGCGAAAAATGATTTAATTC
ATAGCCACCATGAACAAGGATAACTCCGTCCACCAGGTCAGTATCCGACT
GCTCGCTCCCCCTCCCTTCCCTTGCTCACCCTCAGATTCATCCATGATCT
TGCCCGCAGGTTCCTGATACACCCGTCCTCGTCGATGCCTTCCGCAAGTA
TCACTGCCCCGCCGTCGGAAGCCGTGCCCAAGCCCTGTTTTTCCTCTCCC
ATTACCACGCAGATCACTATCAAGGACTGAGTATGGAGTGGTCCACGGGT
GTGATATATTGCTCAACCATCACAGCCCGTCTTTTGACAAATATCATGGG
TGTGCAGGCTCAATACGTGCGCGCCTTGCCCATGCATGAAGAGGTGCCTC
TGCCATGGAATCCGGGGAGGGGCGGACGCGAGGAGGGAGGTTTGAGCGTG
ACGTTGCTCGACGCTAATCATTGCCCGGGGGCCTGCATGTTGCTCTTCAG
GGTCCGGACATGCCGAGGAAGCAGTACGAGGTGCAACGGTGACCACAGCC
GTGGAGCGGAGGTCAGTGGGAGGGAGAGGGACGACGAATTTACGCTTCAT
TTGCACTGTGGGGACATGCGCTACCACCCCAGAATGCTGCACTACGCCGC
TCTCCTGCACGACACCACCGCCTCCCATCCTCCGCGACCGGCCCGTCCTC
GCAAGCTCGACACGATCTACCTGGACACAACCTATGCGCACCCTAAACAC
GCCTTTGCTGCTCAGGAGGATGCGATCCAGAGCGTGGGAGACTTGATCTT
GGCCCGCCTGAGGAAGGAAGGGAGGGAGGTCGCACCCGGCGTCCCTCCTA
CCACAGCCACGACCTCGAACAACCCAAAGAGAGGGACCCTAGCCAGGCAA
TGTTCTCCTTCTTCCACCACGTCCTCTTCCCCTCCCCCTCTCCCTCCCTT
CCTTCCTCCCCCGTCCGCCCCTTCCCCTCGCCCCAAGACTCTCTTCCTCC
TCAGCGCCTACAGCATCGGCAAGGAGCGTCTGCTCCTGGAAGTTGCTCGC
CGCACCCGCCTTCCCATCTATGTCGACGAGGCGAAGATGAAGATACTGGA
ATGCTTGGATCTGCCCCCCTCCCGCCCGCCCTCCCCCCCTTCCTCCCTCC
CGCCCTCCCCCTTCACCACGGACAAGACGGAGACCTGTGTCCACGTCTGC
CGCATGGGATTCTGCGGGGAGATGTGGCCCTTTTTCAAACCCAATTTCTC
CAATTTGGAGAAGAAATTGGAGGAGGAAGCGAGGGAGGGAGGGGGCTACA
CACGTGTCTACGCCTTCATCCCTACAGGGTGGGCGGAAAGCAGCAACTTC
AACCGGCGCAACGCCGTGCGGGAGAAAGGGGGGGGGGGGTCGGTGGAGGG
AGGGAAAGAGGGAGGGGGGGAGGCGAGAATCAAGGTGCAGCTGATACCGT
ACAGCGAACACACGCCCTTCGCGGATTTATTGGACTTTGTCGGGTATTTG
CGACCGAGGCGGGTTGTGCCCACGGTGTGGAGCGACGCGAAGGAGAAGGA
CAGGATCCTCCGACGCTTTCGAGGGGTGCTGGACGACGCGGAGGGGAAGA
GAGCATTTCTCTCCTTGTTCGGGAAGAGGGGGGGGGACGGAGCGCGGGAG
GGAAGGGGGGAGTGA
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Coding sequence (CDS) from alignment at KK037247.1:260967..262781-

>rna7971 ID=rna7971|Name=rna7971|organism=Nannochloropsis gaditana|type=CDS|length=1383bp|location=Sequence derived from alignment at KK037247.1:260967..262781- (Nannochloropsis gaditana)
ATGGAGTGGTCCACGGGTGTGATATATTGCTCAACCATCACAGCCCGTCT
TTTGACAAATATCATGGGTGTGCAGGCTCAATACGTGCGCGCCTTGCCCA
TGCATGAAGAGGTGCCTCTGCCATGGAATCCGGGGAGGGGCGGACGCGAG
GAGGGAGGTTTGAGCGTGACGTTGCTCGACGCTAATCATTGCCCGGGGGC
CTGCATGTTGCTCTTCAGGGTCCGGACATGCCGAGGAAGCAGTACGAGGT
GCAACGGTGACCACAGCCGTGGAGCGGAGGTCAGTGGGAGGGAGAGGGAC
GACGAATTTACGCTTCATTTGCACTGTGGGGACATGCGCTACCACCCCAG
AATGCTGCACTACGCCGCTCTCCTGCACGACACCACCGCCTCCCATCCTC
CGCGACCGGCCCGTCCTCGCAAGCTCGACACGATCTACCTGGACACAACC
TATGCGCACCCTAAACACGCCTTTGCTGCTCAGGAGGATGCGATCCAGAG
CGTGGGAGACTTGATCTTGGCCCGCCTGAGGAAGGAAGGGAGGGAGGTCG
CACCCGGCGTCCCTCCTACCACAGCCACGACCTCGAACAACCCAAAGAGA
GGGACCCTAGCCAGGCAATGTTCTCCTTCTTCCACCACGTCCTCTTCCCC
TCCCCCTCTCCCTCCCTTCCTTCCTCCCCCGTCCGCCCCTTCCCCTCGCC
CCAAGACTCTCTTCCTCCTCAGCGCCTACAGCATCGGCAAGGAGCGTCTG
CTCCTGGAAGTTGCTCGCCGCACCCGCCTTCCCATCTATGTCGACGAGGC
GAAGATGAAGATACTGGAATGCTTGGATCTGCCCCCCTCCCGCCCGCCCT
CCCCCCCTTCCTCCCTCCCGCCCTCCCCCTTCACCACGGACAAGACGGAG
ACCTGTGTCCACGTCTGCCGCATGGGATTCTGCGGGGAGATGTGGCCCTT
TTTCAAACCCAATTTCTCCAATTTGGAGAAGAAATTGGAGGAGGAAGCGA
GGGAGGGAGGGGGCTACACACGTGTCTACGCCTTCATCCCTACAGGGTGG
GCGGAAAGCAGCAACTTCAACCGGCGCAACGCCGTGCGGGAGAAAGGGGG
GGGGGGGTCGGTGGAGGGAGGGAAAGAGGGAGGGGGGGAGGCGAGAATCA
AGGTGCAGCTGATACCGTACAGCGAACACACGCCCTTCGCGGATTTATTG
GACTTTGTCGGGTATTTGCGACCGAGGCGGGTTGTGCCCACGGTGTGGAG
CGACGCGAAGGAGAAGGACAGGATCCTCCGACGCTTTCGAGGGGTGCTGG
ACGACGCGGAGGGGAAGAGAGCATTTCTCTCCTTGTTCGGGAAGAGGGGG
GGGGACGGAGCGCGGGAGGGAAGGGGGGAGTGA
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Synonyms
Publications