EWM22722.1, cds7949 (CDS) Nannochloropsis gaditana

Overview
NameEWM22722.1
Unique Namecds7949
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:260967..262349 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22722.1
Productdna ligase
Orig transcript idgnl|cribi|Naga_100653g1.10304.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:260967..262349 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001279Beta-lactamas-like
IPR011084DRMBL
Homology
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|585103305|gb|EWM22722.1| (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 941.414 bits (2432), Expect = 0.000e+0
Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0
Query:    1 MEWSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKDRILRRFRGVLDDAEGKRAFLSLFGKRGGDGAREGRGE 460
            MEWSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKDRILRRFRGVLDDAEGKRAFLSLFGKRGGDGAREGRGE
Sbjct:    1 MEWSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKDRILRRFRGVLDDAEGKRAFLSLFGKRGGDGAREGRGE 460          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|873218389|emb|CEM39468.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 265.388 bits (677), Expect = 1.243e-74
Identity = 171/456 (37.50%), Postives = 237/456 (51.97%), Query Frame = 0
Query:    3 WSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAP---GVPPTTAT-------TSNNPKRGTLARQC-SPSSTTSSSPPPLPPFLPPPSAPSPR----PKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKDRILRRFRGVLDDAEGKRAFL 443
            W  GVI+CS ITARLL  IM V  +YV+A+ +     +  + G G +      VTL+DA+HCPGA M LF + + +                            LH GD R+HPR+L + AL H             +K+D IYLDTTY+HPKH F  QE AIQS+ D+I   L  E     P   G+ P  A+       T+N+     L  +  SP ++ +++                      +TLFL+SAY+IGKE++ L VA+   + IY++E K +I  CL +         +    + FTTD   T VHV  M  CGEMWPFF+PNF+NLE  LE+       Y+ V  FIPTGWAESSN+NR+NAV+ +G                 +V+L  YSEH+ F +L+ FV  L+P +V+PTV+SD  ++  IL+RF+  L+   G RAFL
Sbjct:   47 WDRGVIHCSPITARLLLEIMAVAPRYVKAMALD----VAHDMGDGHK------VTLIDAHHCPGAVMFLFELSSGKA--------------------------FLHTGDFRFHPRILQHPALQH-------------KKIDGIYLDTTYSHPKHVFPPQETAIQSIVDVIQETLASERPPNTPPLVGLAPLAASKADAAGETANDGGEELLEGEVRSPEASAAAAAAAAAAAASGGEGEEDVERIPKRTLFLVSAYTIGKEKIPLAVAKTCGVKIYLEERKSRIFRCLGM---------ADEDIAAFTTDPAATPVHVVGMDMCGEMWPFFRPNFANLESYLEKH-NLIRTYSHVTGFIPTGWAESSNWNRKNAVKTRG---------------HYEVRLYAYSEHSNFQELVTFVDTLKPTQVIPTVFSDDNDRKNILKRFQPHLNKTAGVRAFL 428          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|971507314|dbj|GAQ90890.1| (putative DNA ligase 1 [Klebsormidium nitens])

HSP 1 Score: 236.113 bits (601), Expect = 1.841e-64
Identity = 158/468 (33.76%), Postives = 226/468 (48.29%), Query Frame = 0
Query:    3 WSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGV---PPTTATTSNNPKRGTLARQCSPSSTTSSSPP-----PLPPFLPPP--SAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKD-----RILRRFRGVLDDAEGKRAFLSLFGKRGGDGAR 455
            W  GVI+CS  TAR++  ++ V   +V  LPM  EV +            G  VTL+DANHCPGA   LFR+    G+  +                      ++HCGDMR+  +M     L     A            D +YLDTTY +P++ F  QE +++ +   + AR+++   E    +   P + A    NP               S  PP     PL   L  P  S   PRP  LF+++ Y IGKE++L  VA R    IYVDE K+KIL CL L         + L  S FT D ++T VHV   GF G+ WPFF+ NF+N+E+ L+E      GY +   F+PTGW       +    REKG               R K+ L+PYSEH+ +A+L ++V +L+P++++PTV  D K  D      + + FR ++D+ EGKR FL  F +R G G++
Sbjct:  122 WRKGVIFCSETTARMVVQVLEVPPHFVVPLPMDREVEID-----------GCGVTLIDANHCPGAIQFLFRIP---GAPEK---------------------RYVHCGDMRFCTQMTANPCLAPYVGA------------DAVYLDTTYCNPRYVFPLQEASVEYIAATVAARMQEWRAEYDAWIKEQPNSGAAAETNPA-------GDGEGVGSGDPPEGEASPLERVLAQPVDSTDCPRP-PLFIIATYVIGKEKILYAVAHRCGCKIYVDERKIKILRCLGL---------NDL--SIFTNDSSKTNVHVVGWGFLGDAWPFFRANFTNMEQALDER-----GYEKAVGFVPTGWTYELK-KKAFPTREKG---------------RCKIHLVPYSEHSNYAELREYVSFLKPKQIIPTVGVDEKGMDGKAVAAMRKHFRNLVDETEGKRRFLRSF-QRSGSGSK 501          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|551672526|ref|XP_005839019.1| (hypothetical protein GUITHDRAFT_65538 [Guillardia theta CCMP2712] >gi|428183181|gb|EKX52039.1| hypothetical protein GUITHDRAFT_65538 [Guillardia theta CCMP2712])

HSP 1 Score: 219.935 bits (559), Expect = 8.138e-64
Identity = 139/415 (33.49%), Postives = 200/415 (48.19%), Query Frame = 0
Query:    6 GVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAK 420
            G IYC+  T  L+          V+ L + +E+ + +  G      G   VT LDANHCPGA +LLF +                          ++ T+HLH GDMRY  +M  Y           P    R   +D +YLDTTY HPKH F  Q+ +I    D+I +      +E   G         ++P R                                    L LLSAY IGKER++ EVARR +  +YVDEAKM+++ CL +         S    S FT +  E+ +H+CRMGF G++WPFF+PNF N+E+ +++       +T   AFIPTGWA+SSN+N++N+++ KG                  V+ +PYSEH+ + +L++FV +LRPR V PTV++D K
Sbjct:   53 GRIYCTKTTGDLV----------VQELKVRKELVVCYEYGESAHVCGA-KVTFLDANHCPGAALLLFEL--------------------------EDGTVHLHTGDMRYDKKMKEY-----------PELVCRRGLIDRVYLDTTYCHPKHVFPGQDKSI----DIIAS-----DQEAIDGAQENR--DGDDPSR-----------------------------------RLVLLSAYKIGKERVICEVARRAKAKVYVDEAKMRVMRCLRM---------SEEDLSVFTCNMRESQIHICRMGFAGDIWPFFRPNFVNIERYIKDNDLP---FTSCMAFIPTGWADSSNYNKKNSLQFKGN---------------FSVKCVPYSEHSNYNELVEFVEFLRPRNVFPTVFTDEK 346          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|1026763507|gb|OAE24541.1| (hypothetical protein AXG93_2415s1200 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 218.394 bits (555), Expect = 1.916e-58
Identity = 147/467 (31.48%), Postives = 209/467 (44.75%), Query Frame = 0
Query:    3 WSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNP---------------KRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSD-----AKEKDRILRRFRGVLDDAEGKRAFLSLFGKR 449
            W  G+I+CS ITA L+   + V A  V  LPM E V +            G  V L+DANHCPGA   LFRV    G   R                      ++HCGDMRYHP M    AL     A            D ++LDTTY +PK+ F +Q++++  V + +  RL +   E             + P               K  T        S            L   S P     TLFL+S Y IGKE++L  VA+R    IYV E K+ +L+CL+L                FTTD + T VHV +  F GE WP+F+PNF  +EK ++E      GY +V  F+PTGW       +  +VR+KG                 ++ L+PYSEH+ + +L ++VG+LRP+ ++PTV  D     +K    + + FR ++D+   K+ FL  F ++
Sbjct:  121 WHKGLIFCSAITANLVKQSLQVPAALVVPLPMGETVTI-----------DGCEVALVDANHCPGAVQFLFRVPGEGGECLR----------------------YVHCGDMRYHPFMKSEPALFDYVGA------------DAVFLDTTYCNPKYIFPSQQESVDYVAETV-ERLMEADVEAPRAEEDEDLVMEDRPEALDEEEEEDVEGLQKPSTAGVNVEGQSKKDVVEDEEDEALFSRSGPLEGRSTLFLISTYVIGKEKILTAVAKRCNCLIYVTEKKLSVLKCLNLENI-----------DIFTTDPSATNVHVVQWSFLGETWPYFRPNFLKMEKAMKE-----SGYKKVVGFVPTGWTYELK-KKTFSVRKKGP---------------FEIHLVPYSEHSNYEELREYVGFLRPKEIIPTVGLDGGGMESKAVATMRKHFRNLVDETASKKNFLKGFSRK 509          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|219121698|ref|XP_002181198.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407184|gb|EEC47121.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 201.83 bits (512), Expect = 1.707e-55
Identity = 140/453 (30.91%), Postives = 205/453 (45.25%), Query Frame = 0
Query:    7 VIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNF---SNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKDRILRRFRGVLDDAEGKRAFLSLFGKRGGDGARE 456
            +I+C+  TA LL  I  V  +YV      E     ++P    +    + +T  DANHCPGA +++  +   +                          +HLH GDMRYH  M  Y  L          R A  R +DT+ LDTTY+ PKH F  QE AI ++       L                        GT  + CS                            L LLS YSIGKE++L EV+ RT   +YV++ KM+++ C+     +     SS      TTD   T +HV  MG  GE+WP+F+PN+   +   K LE E      YT+V AFIPTGWA+ S +N++NA  +    G             ++++LI YSEH+ F++L  FV +LRPR+VVPTV+ D +++ +I  RF   +D    K++F S    +  +  ++
Sbjct:   60 LIHCTPTTAALLREIHQVPEKYVVEHGYGE--TWLFHPLGNTKGLSTVQITFYDANHCPGAAIIVVEMADGK--------------------------VHLHTGDMRYHTMMNVYPIL---------ERAASSRAIDTVLLDTTYSDPKHNFQPQEAAIDAIAAYSEGLL------------------------GTSRKCCS--------------------------NVLILLSCYSIGKEKVLWEVSSRTNQLVYVNDRKMRMMRCI-----QKHHESSSQIVQRCTTDPNATDIHVIPMGLAGELWPYFQPNYWACAEYAKALETE------YTKVVAFIPTGWADGSKWNKKNATSKFDCKG-----------IEVEIRLISYSEHSSFSELKTFVEFLRPRKVVPTVFKDDRDRVKIEGRF--AIDSGRAKQSFFSTMTSKSSNIGKQ 401          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|223532518|gb|EEF34307.1| (DNA ligase I, putative [Ricinus communis])

HSP 1 Score: 207.608 bits (527), Expect = 8.596e-55
Identity = 134/456 (29.39%), Postives = 213/456 (46.71%), Query Frame = 0
Query:    3 WSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKD-----RILRRFRGVLDDAEGKRAFLSLFGKRGGDG 453
            WS G+I+CS ITA L+T I+ V +Q+V  LP+++ V +            G  +TL+DANHCPGA  LLF+VR+                  SG      F +++H GD RY  R +    +L D               D ++LDTTY +PK  F  Q+++I    D +++ + + G +                                              A S R   LFL++ Y +GKER+L+E+A+R R  ++VD  KM++L  L    S             FT D+ ++ VHV      GE WP+F+PNF+N+++ + E      GY+R+  F+PTGW      N+  +VR K                  ++ L+PYSEH+ + +L ++V +LRP+RV+PTV  D +  D     ++ + F G++D+   K+ FL +F +   + 
Sbjct:   87 WSQGMIFCSQITANLVTRILNVPSQFVYPLPLNDTVII-----------DGSEITLIDANHCPGAVQLLFKVRS------------------SGT-----FEMYVHTGDFRY-SREMKEVGILRDFVGC-----------DAVFLDTTYCNPKFVFPKQQESI----DYVVSVIERIGGDF--------------------------------------------QAMSKR--VLFLVATYVVGKERILIEIAKRCRRKVHVDRRKMEVLRVLGYGES-----------GVFTEDEGQSDVHVVGWNVLGETWPYFRPNFANMKEIMVER-----GYSRIVGFVPTGWTYEVKHNKF-SVRSKDS---------------FEIHLVPYSEHSNYDELREYVKFLRPKRVIPTVGVDIENLDSKHAVKMQKHFAGLVDEMANKKQFLMVFHRESSES 414          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|1000948683|ref|XP_015580202.1| (PREDICTED: DNA ligase 1 [Ricinus communis])

HSP 1 Score: 207.608 bits (527), Expect = 8.648e-55
Identity = 134/456 (29.39%), Postives = 213/456 (46.71%), Query Frame = 0
Query:    3 WSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKD-----RILRRFRGVLDDAEGKRAFLSLFGKRGGDG 453
            WS G+I+CS ITA L+T I+ V +Q+V  LP+++ V +            G  +TL+DANHCPGA  LLF+VR+                  SG      F +++H GD RY  R +    +L D               D ++LDTTY +PK  F  Q+++I    D +++ + + G +                                              A S R   LFL++ Y +GKER+L+E+A+R R  ++VD  KM++L  L    S             FT D+ ++ VHV      GE WP+F+PNF+N+++ + E      GY+R+  F+PTGW      N+  +VR K                  ++ L+PYSEH+ + +L ++V +LRP+RV+PTV  D +  D     ++ + F G++D+   K+ FL +F +   + 
Sbjct:   87 WSQGMIFCSQITANLVTRILNVPSQFVYPLPLNDTVII-----------DGSEITLIDANHCPGAVQLLFKVRS------------------SGT-----FEMYVHTGDFRY-SREMKEVGILRDFVGC-----------DAVFLDTTYCNPKFVFPKQQESI----DYVVSVIERIGGDF--------------------------------------------QAMSKR--VLFLVATYVVGKERILIEIAKRCRRKVHVDRRKMEVLRVLGYGES-----------GVFTEDEGQSDVHVVGWNVLGETWPYFRPNFANMKEIMVER-----GYSRIVGFVPTGWTYEVKHNKF-SVRSKDS---------------FEIHLVPYSEHSNYDELREYVKFLRPKRVIPTVGVDIENLDSKHAVKMQKHFAGLVDEMANKKQFLMVFHRESSES 414          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|702374256|ref|XP_010062220.1| (PREDICTED: DNA ligase 6 isoform X3 [Eucalyptus grandis])

HSP 1 Score: 207.223 bits (526), Expect = 1.041e-54
Identity = 140/449 (31.18%), Postives = 203/449 (45.21%), Query Frame = 0
Query:    3 WSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKD-----RILRRFRGVLDDAEGKRAFLSLF 446
            WS GV++CS  T+RLL +++GV A+ V +LP+ E + +            G  V L+DANHCPGA M LF+V    G                      EF  ++H GD R+   M               P        D I+LDTTY +PK  F +QE++I  V  +I  R+  E R+ A  +                                                 LFL++ Y IGKER+LLEVARR    +YVD  KM +L  L    S             FT D++ET VHV      GE WP+F+PNF  +++ + E+     GY +V  F+PTGW      ++  A+R+K                  ++ L+PYSEH+ + +L +FV +L+P+RV+PTV SD ++ D     R+ + F G+LD+   K+ FL  F
Sbjct:   83 WSRGVVFCSPTTSRLLIDVLGVPARLVVSLPVGEALSID-----------GCEVRLVDANHCPGAVMFLFKVPGGGGG---------------------EFRRYVHTGDFRFRDSM------------RSEPGLGEFVACDAIFLDTTYCNPKFVFPSQEESIDYVASVI-ERVGVENRDSAKNI-------------------------------------------------LFLVATYVIGKERILLEVARRCGCKVYVDGRKMAVLRALGYSES-----------GAFTEDESETAVHVVGWNVLGETWPYFRPNFVQMKELIVEK-----GYNKVVGFVPTGWTYEVKRDKF-AIRKKDS---------------FEIHLVPYSEHSNYNELREFVKFLKPKRVIPTVGSDIEKLDGKHFHRVQKLFAGLLDETANKKEFLMNF 405          
BLAST of EWM22722.1 vs. NCBI_GenBank
Match: gi|702374259|ref|XP_010062221.1| (PREDICTED: DNA ligase 6 isoform X4 [Eucalyptus grandis])

HSP 1 Score: 207.223 bits (526), Expect = 1.194e-54
Identity = 140/449 (31.18%), Postives = 203/449 (45.21%), Query Frame = 0
Query:    3 WSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLPWNPGRGGREEGGLSVTLLDANHCPGACMLLFRVRTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTASHPPRPARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGREVAPGVPPTTATTSNNPKRGTLARQCSPSSTTSSSPPPLPPFLPPPSAPSPRPKTLFLLSAYSIGKERLLLEVARRTRLPIYVDEAKMKILECLDLPPSRPPSPPSSLPPSPFTTDKTETCVHVCRMGFCGEMWPFFKPNFSNLEKKLEEEAREGGGYTRVYAFIPTGWAESSNFNRRNAVREKGGGGSVEGGKEGGGEARIKVQLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKD-----RILRRFRGVLDDAEGKRAFLSLF 446
            WS GV++CS  T+RLL +++GV A+ V +LP+ E + +            G  V L+DANHCPGA M LF+V    G                      EF  ++H GD R+   M               P        D I+LDTTY +PK  F +QE++I  V  +I  R+  E R+ A  +                                                 LFL++ Y IGKER+LLEVARR    +YVD  KM +L  L    S             FT D++ET VHV      GE WP+F+PNF  +++ + E+     GY +V  F+PTGW      ++  A+R+K                  ++ L+PYSEH+ + +L +FV +L+P+RV+PTV SD ++ D     R+ + F G+LD+   K+ FL  F
Sbjct:   83 WSRGVVFCSPTTSRLLIDVLGVPARLVVSLPVGEALSID-----------GCEVRLVDANHCPGAVMFLFKVPGGGGG---------------------EFRRYVHTGDFRFRDSM------------RSEPGLGEFVACDAIFLDTTYCNPKFVFPSQEESIDYVASVI-ERVGVENRDSAKNI-------------------------------------------------LFLVATYVIGKERILLEVARRCGCKVYVDGRKMAVLRALGYSES-----------GAFTEDESETAVHVVGWNVLGETWPYFRPNFVQMKELIVEK-----GYNKVVGFVPTGWTYEVKRDKF-AIRKKDS---------------FEIHLVPYSEHSNYNELREFVKFLKPKRVIPTVGSDIEKLDGKHFHRVQKLFAGLLDETANKKEFLMNF 405          
The following BLAST results are available for this feature:
BLAST of EWM22722.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103305|gb|EWM22722.1|0.000e+0100.00dna ligase [Nannochloropsis gaditana][more]
gi|873218389|emb|CEM39468.1|1.243e-7437.50unnamed protein product [Vitrella brassicaformis C... [more]
gi|971507314|dbj|GAQ90890.1|1.841e-6433.76putative DNA ligase 1 [Klebsormidium nitens][more]
gi|551672526|ref|XP_005839019.1|8.138e-6433.49hypothetical protein GUITHDRAFT_65538 [Guillardia ... [more]
gi|1026763507|gb|OAE24541.1|1.916e-5831.48hypothetical protein AXG93_2415s1200 [Marchantia p... [more]
gi|219121698|ref|XP_002181198.1|1.707e-5530.91predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223532518|gb|EEF34307.1|8.596e-5529.39DNA ligase I, putative [Ricinus communis][more]
gi|1000948683|ref|XP_015580202.1|8.648e-5529.39PREDICTED: DNA ligase 1 [Ricinus communis][more]
gi|702374256|ref|XP_010062220.1|1.041e-5431.18PREDICTED: DNA ligase 6 isoform X3 [Eucalyptus gra... [more]
gi|702374259|ref|XP_010062221.1|1.194e-5431.18PREDICTED: DNA ligase 6 isoform X4 [Eucalyptus gra... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7971rna7971Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications