rna7969, rna7969 (mRNA) Nannochloropsis gaditana

Overview
Namerna7969
Unique Namerna7969
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length891
Alignment locationKK037247.1:251697..253432 +

Link to JBrowse

Properties
Property NameValue
Productphosphatidylinositol kinase
Orig transcript idgnl|cribi|Naga_101049g1.10512.mrna
Orig protein idgnl|cribi|Naga_101049g1.10512
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:251697..253432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101049g1gene7716Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7969rna7969-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22727.1cds7947Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7969 ID=rna7969|Name=rna7969|organism=Nannochloropsis gaditana|type=mRNA|length=891bp
GCGCGAAGGGCGCTCTCAGCACGCTTTGTGGCAGACTTGACGTTTCCAGA
TGAATCCGTGGTGCAGCCAGGGCTGGACATGCTCAAGATCTGGTGCATGG
CCAACAACGGATCGGAACGCTTTCCTCCCAACGCGCGCCTGGTCTTTGTC
CACGGGCATCGGATGGAGGGCCCGAGGGAGGGGGTGCCGGTGGGGGAGGT
CGAGGCAGGGGCGGAGTTCAACGTGGCGCTTCCCCTCACGACGCCCACGG
TTCCCGACCGTTACGTCGGTTACTGGCAGTTGGAAGCGCATGGGCCTCGC
GGGGAGCGGGTGGAGCTGGGGCATCGGATTTGGATTGACGTGGTGGTGGA
GGAGAAAGAGGAGGGGTGGGAGTTGGTGCGAGCGACACGAGAGGAGGGGG
GCCAGGGAGAAAGGGAGGAGGGAGCGAGGGCGATGGGAGGCGAAGAAGGA
GAGGAAATGGGGGAGGATGATGGTGACGAGGAGGAAAAGGTTGAAGATGA
CGGGGAAGACGAATCCCTGTTGGAGACGGCAGCGGCAGCCACCCTCGCTT
CCTCCTTCCCTTCCCCTCTCGCTTCCTCCCTCCCGGGCTCGCAAGACTGG
TCAAAATGGACCCCTCAACTGGAGCTCTTGGCCGCCATGGGCTTCGAGAC
GCGCCTGGATGAATGCGTAGTGCTCATGGAAAAAATCTGGAAGGAGGAAG
GGGAGGAGGGAGGGGTGGGAGGGGCTGCGCCCGCCTCCTCCTCCTCGGGT
GGTGCTCCTCCTTGTTCGCCTTCGTCCGATCCCTCCTTGATAGAGGATAG
AGGGCTCAGGACTGAAGGGCTTCGTCTCCAAGCCAATCGCTCTTACTTTC
ATCCAGCACCGGGTAACGCGTATGTTAGCTTGAGTATGTAA
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protein sequence of rna7969

>rna7969-protein ID=rna7969-protein|Name=rna7969|organism=Nannochloropsis gaditana|type=polypeptide|length=269bp
MANNGSERFPPNARLVFVHGHRMEGPREGVPVGEVEAGAEFNVALPLTTP
TVPDRYVGYWQLEAHGPRGERVELGHRIWIDVVVEEKEEGWELVRATREE
GGQGEREEGARAMGGEEGEEMGEDDGDEEEKVEDDGEDESLLETAAAATL
ASSFPSPLASSLPGSQDWSKWTPQLELLAAMGFETRLDECVVLMEKIWKE
EGEEGGVGGAAPASSSSGGAPPCSPSSDPSLIEGGERRSERAKAWGEEEK
LQAVVEALLGRDSEEGRRR
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mRNA from alignment at KK037247.1:251697..253432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7969 ID=rna7969|Name=rna7969|organism=Nannochloropsis gaditana|type=mRNA|length=1736bp|location=Sequence derived from alignment at KK037247.1:251697..253432+ (Nannochloropsis gaditana)
GGATTCAGCGCAAGGCGGACCTCAAACCTCTTCCCTCAATTTCTCTTTCC
AGGTGCATGGCCAACAACGGATCGGAACGCTTTCCTCCCAACGCGCGCCT
GGTCTTTGTCCACGGGCATCGGATGGagggcccgagggagggggtgccgg
tgggggaggtcgaggcaggggcggagtTCAAGTAcgtacggagggaggga
gggaggaagggagggagggagggaggacagagaggacgacgagaaggaga
ggaggcgtagagaaagcagggagagCGGTATCTTTGGTTATCCTCTCGGG
TCGTGACTGCTCTCGGAAGGTTAGTTAGTACCGAGGCACTGACCggccat
ccctcctctctgaTTTACTATCTCCCGCCCGACCCTTTCCCAGCGTGGCG
CTTCCCCTCACGACGCCCACGGTTCCCGACCGTTACGTCGGTTACTGGCA
GTTGGAAGCGCATGGGCCTCGCGGGGAGCGGGTGGAGCTGGGGCATCGGA
TTTGGATtgacgtggtggtggaggagaaagaggaggggtgggagttGGTG
CGAGCGACacgagaggaggggggccagggagaaagggaggagggagcgag
ggcgatgggaggcgaagaaggagaggaaatgggggaggatgatggtgacg
aggaggaaaaggttgAAGAtgacggggaagacgaaTCCCTGTTGGAgacg
gcagcggcagccaccctcgcttcctccttcccttcccctctcgcttcctc
cctcccgggctCGCAAGACTGGTCAAAATGGACCCCTCAACTGGAGCTCT
TGGCCGCCATGGGCTTCGAGACGCGCCTGGATGAATGCGTAGTGCTCATG
GAAAAaatctggaaggaggaaggggaggagggaggggtgggaggggctgc
gcccgcctcctcctcctcgggtggtgctcctccttgttcgCCTTCGTCCG
ATCCCTCCTTGATagagggtggggaaaggCGAAGCGAGAGAGcgaaggcg
tggggggaagaggaaaaactGCAGGCGGTAGTAGAAGCCTTGCTAGGGAG
GGACTCTGAGGAGGGACGCCGTCGGTAGACAagatggcgaggaagaagga
cgggaagTTCGGAGGGGTGGTGTACGGTGACACGCAGAAATGCTGCTTAT
CATGAGAGCCTTTCCTAAAAGATAGAGGGCTCAGGACTGAAGGGCTTCGT
CTCCAAGCCAATCGCTCTTACTTTCATCCAGCACCGGGTAACGCGTATGT
TAGCTTGAGTATGTAATTCGGAAGATAAATTCATGGAAGAGACGAAGGGC
AAAAAAGAAATACGgccaaaagaaaaaaaatgcgtgTAATTAGAAGGTGT
CGCAGGGGATCGTAATTTCAACGATGAATTCTCGCTCTCAGAAAGGGTCA
AGAGCTGTTGGACAAAGcagatggaaaggaagaagaatagcgaggagaag
gagagcaatACTTGAGGCGCAGAGAAGGCTTATGAAAGCGAAAGCATGAA
AACAAGTTGGAAAAGACATGACCGAtaagaaggggggaagttTTAAGTAG
ATACGTGTTTGCTCGAGAATGTTGACGAGGGAAAGATATTGCGGACAAAA
GAGGTACAACTTCACACGGGATTCTAGAAACCATGAACAAGGACCTTGCT
CACGGGGCCTTTAAAAACAGAAGAAATCCGCCGTTTATTGGAACTTGAAT
TGTTCAAGATGGTGGGTATTATCGCATGAATTTTCC
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Coding sequence (CDS) from alignment at KK037247.1:251697..253432+

>rna7969 ID=rna7969|Name=rna7969|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at KK037247.1:251697..253432+ (Nannochloropsis gaditana)
ATGGCCAACAACGGATCGGAACGCTTTCCTCCCAACGCGCGCCTGGTCTT
TGTCCACGGGCATCGGATGGagggcccgagggagggggtgccggtggggg
aggtcgaggcaggggcggagtTCAACGTGGCGCTTCCCCTCACGACGCCC
ACGGTTCCCGACCGTTACGTCGGTTACTGGCAGTTGGAAGCGCATGGGCC
TCGCGGGGAGCGGGTGGAGCTGGGGCATCGGATTTGGATtgacgtggtgg
tggaggagaaagaggaggggtgggagttGGTGCGAGCGACacgagaggag
gggggccagggagaaagggaggagggagcgagggcgatgggaggcgaaga
aggagaggaaatgggggaggatgatggtgacgaggaggaaaaggttgAAG
AtgacggggaagacgaaTCCCTGTTGGAgacggcagcggcagccaccctc
gcttcctccttcccttcccctctcgcttcctccctcccgggctCGCAAGA
CTGGTCAAAATGGACCCCTCAACTGGAGCTCTTGGCCGCCATGGGCTTCG
AGACGCGCCTGGATGAATGCGTAGTGCTCATGGAAAAaatctggaaggag
gaaggggaggagggaggggtgggaggggctgcgcccgcctcctcctcctc
gggtggtgctcctccttgttcgCCTTCGTCCGATCCCTCCTTGATagagg
gtggggaaaggCGAAGCGAGAGAGcgaaggcgtggggggaagaggaaaaa
ctGCAGGCGGTAGTAGAAGCCTTGCTAGGGAGGGACTCTGAGGAGGGACG
CCGTCGGTAGATGGCCAACAACGGATCGGAACGCTTTCCTCCCAACGCGC
GCCTGGTCTTTGTCCACGGGCATCGGATGGagggcccgagggagggggtg
ccggtgggggaggtcgaggcaggggcggagtTCAACGTGGCGCTTCCCCT
CACGACGCCCACGGTTCCCGACCGTTACGTCGGTTACTGGCAGTTGGAAG
CGCATGGGCCTCGCGGGGAGCGGGTGGAGCTGGGGCATCGGATTTGGATt
gacgtggtggtggaggagaaagaggaggggtgggagttGGTGCGAGCGAC
acgagaggaggggggccagggagaaagggaggagggagcgagggcgatgg
gaggcgaagaaggagaggaaatgggggaggatgatggtgacgaggaggaa
aaggttgAAGAtgacggggaagacgaaTCCCTGTTGGAgacggcagcggc
agccaccctcgcttcctccttcccttcccctctcgcttcctccctcccgg
gctCGCAAGACTGGTCAAAATGGACCCCTCAACTGGAGCTCTTGGCCGCC
ATGGGCTTCGAGACGCGCCTGGATGAATGCGTAGTGCTCATGGAAAAaat
ctggaaggaggaaggggaggagggaggggtgggaggggctgcgcccgcct
cctcctcctcgggtggtgctcctccttgttcgCCTTCGTCCGATCCCTCC
TTGATagagggtggggaaaggCGAAGCGAGAGAGcgaaggcgtgggggga
agaggaaaaactGCAGGCGGTAGTAGAAGCCTTGCTAGGGAGGGACTCTG
AGGAGGGACGCCGTCGGTAG
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Synonyms
Publications