rna7965, rna7965 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7965
Unique Name	rna7965
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1032
Alignment location	KK037247.1:244435..248364 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100561g2.10220.mrna
Orig protein id	gnl\|cribi\|Naga_100561g2.10220
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:244435..248364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100561g2	gene7714	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7965	rna7965-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22730.1	cds7943	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:244435..248364+
coding sequence from alignment at KK037247.1:244435..248364+

mRNA sequence

>rna7965 ID=rna7965|Name=rna7965|organism=Nannochloropsis gaditana|type=mRNA|length=1032bp
ATGCCGCTTTTTGTTTCCTCCCGCTACTTGCTGTCGATCGCAACCGCCGT
CCTCTGCTTGACATCCTCTTTCAGCCACGCGAAGATTGTAGTTGAAGATA
ATTTCATCGACGAGACTACACGCGAAGCTCTCCTTGCACAGCTTCCGTCT
GAGATGCATCGTTTCAAACACACGGTCGATGTACCAGGCAACGTGTACAA
GCGCTTGCTTTCCGTGTTGCATCCTGAAAACTCCGAAGTATTTCCTTCCC
AGCTCACTGCACCGGCCAAAGGACAGAAAGGTATGGTCGCCGCTCACAAA
GATACATTCGAGGACAGTTCTCTGGCAGACAGGCAGGTGGGCTTGGTGTA
CCTGGAAGGGGATGGCCGCATGCAATTGAAAAACGATGTGACCGGAGAGG
AAACGATTATCGACGTCAAGCCTGGCCGATTCCTGTCGTGGGATAACCGT
CATTATACTCACCAGCTTCTTGCGGGTAGCATGCCACGGCGCATTCTTGG
TCCGATGGCTTTCCGTGACGGGGGATTTCAGTCTATTGGAGATGACCCCA
ACCGTTTTATCATCCAGGCCCGCGCCCATCACCTGTTCGCGCGGGCCGGC
AAGACGGTGCGTGTGACTGCGGATCTCGTAGTGTTGGATGACCAGCCCAT
CGGCCGTAAACGTGCTGTGCGGGCACTCGAGACCGACGACATTGTATTTG
CGTGCAGCCTTGATCCCTTCTTCAATTTCCAGTCCCTTACTACGGGCAAC
AAGACCAGCAAGCATCGCAAGGATGGCACTGACGTCGGGATTTCTTTCTC
CCGGTCCAAAATCGCTCCCAACACGTGGAGGCCTAAGATCACGTATGAGA
TCGTCGACGAAGGCGACACCCTGGTGTGGACTCTCCCCAGCGACGGGACC
AGGCTTCTCAAGAAGTATAAGATCACCATCATCATGCGAATTGGAAAGAA
CGTTCCTTCTGGCACCGTGATTCCCCTGTACTTGAGCGTGCCCTTTGAAT
GGGAGCAGGAGCTGGGCGTGGTGGTCAAGTAA

protein sequence of rna7965

>rna7965-protein ID=rna7965-protein|Name=rna7965|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MPLFVSSRYLLSIATAALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPS
EMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHK
DTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNR
HYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARA
GKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFFNFQSLTAGN
KTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGT
RLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK

mRNA from alignment at KK037247.1:244435..248364+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7965 ID=rna7965|Name=rna7965|organism=Nannochloropsis gaditana|type=mRNA|length=3930bp|location=Sequence derived from alignment at KK037247.1:244435..248364+ (Nannochloropsis gaditana)
TTAAGCCGTTTTACAGGATTACATCCGTTACAGCCGTTATACGTGATTAT
TTCTGTTATTGGCTCTACGGTCTGTACTacgatgtgctgatcgccATTGc
gtcatgtcatggtttgcgtccacctgATCATTTTGTATGTTTTATAATtg
tacgacaacaggactggcgtcgaccacTGTCTTTAATAGTCTTTGGTTTT
ATTGGTTATCTTTGGTATaagattcttgggtgaatcattGGTCTatattc
tcagggagaatagtggTTGTACTGAAGAATTAATTGGGTATTGGCTTATC
CACAGCGTTTTGATTTGTCTATTAGCATCAAGCATGTACCCATGGAAGCA
TGTGTTGGTCATTTTCTCTATGGCCCTTCCCTCGTCTGTCATGCTAGGCG
AAGCCCCATATTTCCCGCTTCTTTCGCCTTTGTCTTGTCGCCATTCCCCT
GCAGCCTTATTCTCGTCCTGGATGACTCTGTCGAGGCGCTAGCCGGTGTC
TACGCACTATCATTCCTCTGCGTCATGGCTTTATTTACCATCGGCAACAT
GCTTCTCAAGGTCCTTCAGTGTCCTCTCCCAtatttctccttttctctgt
gtttcctcgatccctcctccagaacGCAAGTTTTCGAAACAATtggcttt
tcttcctccccttcgcacCCGATACCCCTTCCGCTTCCCTATAGTTCAAA
CGACCAAATTTTTGTCgtccctttctttgcccttgGTGGAAGCTCTTCTC
GGGCTTTTTTGTGTAGGAGTCGGGTTCGTCGGGAACATGATGGAAAAAGC
CCGCGTACTTCCGTACTTCGTGGCCTAATATGCTGTGATCGTCACACTGG
TATGGATGCGAAAAGATTGGATCGACATTTTAGGGACAGAATGAAAAAAA
TGCGTTTCCAAATTGCTTTTGACAATAAGTAAGATGAAAGATTGGTACGG
GAATGATCATAGACGATTGTTCGCGCCTCCCGCATTTCCTGTCGTATTTA
CGCTATTCACCTTTTCtatttctctcctcctctttttcagTGCCTCGTGA
TGTTCCAACGCGAAAGCTCTTTTGTACGTGCGGGACAATGAGCAGACCTT
CCGGGTTTTGATTGTGCATTTCTCaatgcaggagggagaggaagggaggg
aggaaggaaaaggcgagaGGGATGCAGAGAAAAAAATACATGGCGGCCGT
GAGAGTGATCGACAAGATCTAACCCAAGATAATGGTAAGTGCATTGGAAT
AACGGGATCGAAATTTTGAGAGAAGTAGGTGGAGAGGAGTAGGAGGAATA
AAGCACTCGTATCTGTACCTCAGAAACTACTCATTTCCTACATCGTCGCT
CTACCTTCTCAGGTGAAGTGTCTGTATATCCAACGGACTTTCTCCCCCAA
AGCCCTGAGTCGACTTTCTTTCGAGACAGGCATTCCGTCAAACCGATTAT
TCATGGCCTGTTCTCCAAAGATTGAGGACTTCCACGAATTTTCTGACGTT
CGAATTGTGACGCATTGATGGGGTcacaagaaaaaaaggacacGCAGGGC
TAAGAGCAAATAGCTTCACATGCTTCGATTCAGACTTCGATTGACATATA
TCGCCATTTTCTAACGGCTCCTGCGCCCCGGTCCCATAACTTTATTGTTT
CGGTTGCTTGCCCGCGGGCCAGAATATCCTTACGCATTATGCAAGAGCAC
TTTTTGTTCTGAAAACGAAGCATATAGTCTCGTTGCGATGGTTTCCTCGT
GGAGATTAGTCAGCGAACTTGGCGCGAGGCAATGCTCGCTTCAGATCTTT
TACTTAAAATGTTTCTCTCGCAATACTCTAGGTTTTGTCATATTCACTGA
CTGCAGCAGCCATGCCGCTTTTTGTTTCCTCCCGCTACTTGCTGTCGATC
GCAACAGCTGCCCTCTGCTTGACATCCTCTTTTAGCTTTGCGAAGATTGT
AGTTGAAGATAATTTCATCGACGAGACTACACGCGACGCTCTCCTTGCGC
AGCTTCCGTCTGAGATGCATCGTTTCAAACACACGGTTGATTTACCTGGC
AAGGTGTACAAGCGCCTCCTTTCCGTGTTGCATCCTGAAAACTCCGAAGT
ATTTCCTTCCCAGCTCACTGCACCGGCCAAAGGACAGAAAGGTATGGTCG
CCGCTCACAAAGATACATTCGAGGACAGTTCTCTGGCAGACAGGCAGGTG
GGCTTGGTGTACCTGGAAGGGGATGGCCGCATGCAATTGAAAAACGATGT
GACCGGAGAGGAAACGATTATCGACGTCAAGCCTGGCCGATTCCTGTCGT
GGGATAACCGTCATTATACTCACCAGCTTCTTGCGGGTAGCATGCCACGG
CGCATTCTTGGTCCGATGGCTTTCCGTGACGGGGGATTTCAGTCtattgg
aggaggtgatcgCAACCGTTTTATCATCCAGGCCCGCGCCCATCCCCTGT
TCGCTCGGGCCGGCAAGACGGTGCGTGTGACTGCGGATCTCGTAGTGTTG
GATGACCAACCAGGACGTGAACGTGCTGTGCGGGCACTTCCGACCGCCGA
CATTGTATTTGCGGTAAGTGACCAAAATCTAAGAATtgaggaaagagagc
gaaTAGCATCGGTGAAAGTCCTTGAATAAGTTTTCAACTCTAATTCCTTG
TAGCATTTCCATGATTTGATGAGCCACACGGATATATTCATGGATGTGAC
GCAATCATGTGGCAATACTGATGATTTCGCTTCCATGTCGCGGACATGTT
CCTTTCTACTCTtgcttcccccttttctttcagtGCAGCCTTGATCCCTT
CTTCAATTTCCAGTCCCTTACTGCGGGCAACAAGACCAGCAAGCATCGCA
AGGATGGCACTGACGTCGGGATTTCTTTCTCCCGGTCCAAAATCGCTCCC
AACACGTGGAGGCCTAAGTAAGTCAAATCTCCATCCATTCATTGCTTTTT
CTCTGCCTTCCTATAATGCTGACAGGGAGAAAGCGTTATTGTTTACCTTG
ATCGTTCCTCACTCCTCATCCGTCAAGTCTTTTTGTGTAGTGTGGAAACG
CTTGCTTGTTTCACGTCACGCTTTGCTCGATCGGCAAGCTGATTGTtctc
ccatcttcctttATTGCCCCGTAAGGATCACGTATGAGATCGTCGACGAA
GGCGACACCCTGGTGTGGACTCTCCCCAGCGACGGGACCAGGCTTCTCAA
GAAGTATAAGATTACCATCATCATGCGAATTGGAAAGAACGTTCCTTCTG
GCACCATGATTCCCCTGTACTTGAGCGTGCCCTCTGAatgggagcaggag
ctgggCGTGGTGGTCAAGTAAGTGCCTTGGGCTTTCTTACTCTAAGGGAG
GAAAACTATTATGTCATTTGGACAGTGATTTCGAGTGGTAACAAAGATAA
AGGACAAAAGAAAGAGAATTAAAAAAAGCAGCAAGCAACTCTCGAAAAGT
ATGAAGGGAAGAAGATCTAgtaagaaagggaggggaacacTTGCGATTCG
ACTGTAAGGGGAAAGCTGTTGCAAACGTGCTTCATGGTCAGGATATCCGA
GAAACGTCCAATACACCTTGCGGTCAAAATCATTCGGAGAGTCAGGAGAC
TGCGAAGAGAGAAATCATCGGAGTAGGAAGGTGCTTTGCGTGCCCATCTA
CCCTGGATAGCCTCATGAATACAATGGCGCTGGCGTGTGTATTTATGACC
AACTTATCACTTATTCAAAGGATCAATCACAAGCTATGAACTAGCCCTCT
CGGCAGTAAGTAAAGGCTGTACTTCGATGTGCGCAATATGCCTCTATTCA
AGAAAGTCTTTCATGCTATTTCATTTCTCCTCCGACAACTCTTTCAAGAT
GAACGCCTTAGCCTTTTCGCCCCTGTGCAACTTGATATTCTTCCCATACT
TCTCGCTCCTGACGTTTTCATTCAGGAagg

Coding sequence (CDS) from alignment at KK037247.1:244435..248364+

>rna7965 ID=rna7965|Name=rna7965|organism=Nannochloropsis gaditana|type=CDS|length=3096bp|location=Sequence derived from alignment at KK037247.1:244435..248364+ (Nannochloropsis gaditana)
ATGCCGCTTTTTGTTTCCTCCCGCTACTTGCTGTCGATCGCAACAGCTGC
CCTCTGCTTGACATCCTCTTTTAGCTTTGCGAAGATTGTAGTTGAAGATA
ATTTCATCGACGAGACTACACGCGACGCTCTCCTTGCGCAGCTTCCGTCT
GAGATGCATCGTTTCAAACACACGGTTGATTTACCTGGCAAGGTGTACAA
GCGCCTCCTTTCCGTGTTGCATCCTGAAAACTCCGAAGTATTTCCTTCCC
AGCTCACTGCACCGGCCAAAGGACAGAAAGGTATGGTCGCCGCTCACAAA
GATACATTCGAGGACAGTTCTCTGGCAGACAGGCAGGTGGGCTTGGTGTA
CCTGGAAGGGGATGGCCGCATGCAATTGAAAAACGATGTGACCGGAGAGG
AAACGATTATCGACGTCAAGCCTGGCCGATTCCTGTCGTGGGATAACCGT
CATTATACTCACCAGCTTCTTGCGGGTAGCATGCCACGGCGCATTCTTGG
TCCGATGGCTTTCCGTGACGGGGGATTTCAGTCtattggaggaggtgatc
gCAACCGTTTTATCATCCAGGCCCGCGCCCATCCCCTGTTCGCTCGGGCC
GGCAAGACGGTGCGTGTGACTGCGGATCTCGTAGTGTTGGATGACCAACC
AGGACGTGAACGTGCTGTGCGGGCACTTCCGACCGCCGACATTGTATTTG
CGtGCAGCCTTGATCCCTTCTTCAATTTCCAGTCCCTTACTGCGGGCAAC
AAGACCAGCAAGCATCGCAAGGATGGCACTGACGTCGGGATTTCTTTCTC
CCGGTCCAAAATCGCTCCCAACACGTGGAGGCCTAAGATCACGTATGAGA
TCGTCGACGAAGGCGACACCCTGGTGTGGACTCTCCCCAGCGACGGGACC
AGGCTTCTCAAGAAGTATAAGATTACCATCATCATGCGAATTGGAAAGAA
CGTTCCTTCTGGCACCATGATTCCCCTGTACTTGAGCGTGCCCTCTGAat
gggagcaggagctgggCGTGGTGGTCAAGTAAATGCCGCTTTTTGTTTCC
TCCCGCTACTTGCTGTCGATCGCAACAGCTGCCCTCTGCTTGACATCCTC
TTTTAGCTTTGCGAAGATTGTAGTTGAAGATAATTTCATCGACGAGACTA
CACGCGACGCTCTCCTTGCGCAGCTTCCGTCTGAGATGCATCGTTTCAAA
CACACGGTTGATTTACCTGGCAAGGTGTACAAGCGCCTCCTTTCCGTGTT
GCATCCTGAAAACTCCGAAGTATTTCCTTCCCAGCTCACTGCACCGGCCA
AAGGACAGAAAGGTATGGTCGCCGCTCACAAAGATACATTCGAGGACAGT
TCTCTGGCAGACAGGCAGGTGGGCTTGGTGTACCTGGAAGGGGATGGCCG
CATGCAATTGAAAAACGATGTGACCGGAGAGGAAACGATTATCGACGTCA
AGCCTGGCCGATTCCTGTCGTGGGATAACCGTCATTATACTCACCAGCTT
CTTGCGGGTAGCATGCCACGGCGCATTCTTGGTCCGATGGCTTTCCGTGA
CGGGGGATTTCAGTCtattggaggaggtgatcgCAACCGTTTTATCATCC
AGGCCCGCGCCCATCCCCTGTTCGCTCGGGCCGGCAAGACGGTGCGTGTG
ACTGCGGATCTCGTAGTGTTGGATGACCAACCAGGACGTGAACGTGCTGT
GCGGGCACTTCCGACCGCCGACATTGTATTTGCGtGCAGCCTTGATCCCT
TCTTCAATTTCCAGTCCCTTACTGCGGGCAACAAGACCAGCAAGCATCGC
AAGGATGGCACTGACGTCGGGATTTCTTTCTCCCGGTCCAAAATCGCTCC
CAACACGTGGAGGCCTAAGATCACGTATGAGATCGTCGACGAAGGCGACA
CCCTGGTGTGGACTCTCCCCAGCGACGGGACCAGGCTTCTCAAGAAGTAT
AAGATTACCATCATCATGCGAATTGGAAAGAACGTTCCTTCTGGCACCAT
GATTCCCCTGTACTTGAGCGTGCCCTCTGAatgggagcaggagctgggCG
TGGTGGTCAAGTAAATGCCGCTTTTTGTTTCCTCCCGCTACTTGCTGTCG
ATCGCAACAGCTGCCCTCTGCTTGACATCCTCTTTTAGCTTTGCGAAGAT
TGTAGTTGAAGATAATTTCATCGACGAGACTACACGCGACGCTCTCCTTG
CGCAGCTTCCGTCTGAGATGCATCGTTTCAAACACACGGTTGATTTACCT
GGCAAGGTGTACAAGCGCCTCCTTTCCGTGTTGCATCCTGAAAACTCCGA
AGTATTTCCTTCCCAGCTCACTGCACCGGCCAAAGGACAGAAAGGTATGG
TCGCCGCTCACAAAGATACATTCGAGGACAGTTCTCTGGCAGACAGGCAG
GTGGGCTTGGTGTACCTGGAAGGGGATGGCCGCATGCAATTGAAAAACGA
TGTGACCGGAGAGGAAACGATTATCGACGTCAAGCCTGGCCGATTCCTGT
CGTGGGATAACCGTCATTATACTCACCAGCTTCTTGCGGGTAGCATGCCA
CGGCGCATTCTTGGTCCGATGGCTTTCCGTGACGGGGGATTTCAGTCtat
tggaggaggtgatcgCAACCGTTTTATCATCCAGGCCCGCGCCCATCCCC
TGTTCGCTCGGGCCGGCAAGACGGTGCGTGTGACTGCGGATCTCGTAGTG
TTGGATGACCAACCAGGACGTGAACGTGCTGTGCGGGCACTTCCGACCGC
CGACATTGTATTTGCGtGCAGCCTTGATCCCTTCTTCAATTTCCAGTCCC
TTACTGCGGGCAACAAGACCAGCAAGCATCGCAAGGATGGCACTGACGTC
GGGATTTCTTTCTCCCGGTCCAAAATCGCTCCCAACACGTGGAGGCCTAA
GATCACGTATGAGATCGTCGACGAAGGCGACACCCTGGTGTGGACTCTCC
CCAGCGACGGGACCAGGCTTCTCAAGAAGTATAAGATTACCATCATCATG
CGAATTGGAAAGAACGTTCCTTCTGGCACCATGATTCCCCTGTACTTGAG
CGTGCCCTCTGAatgggagcaggagctgggCGTGGTGGTCAAGTAA

Synonyms

Publications