EWM22730.1, cds7943 (CDS) Nannochloropsis gaditana

Overview
NameEWM22730.1
Unique Namecds7943
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:246296..246997 +
Alignment locationKK037247.1:247218..247351 +
Alignment locationKK037247.1:247560..247755 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22730.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100561g2.10220.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:246296..246997 +
KK037247.1supercontigKK037247.1:247218..247351 +
KK037247.1supercontigKK037247.1:247560..247755 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|585103321|gb|EWM22729.1| (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >gi|585103322|gb|EWM22730.1| hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0
Query:    1 MPLFVSSRYLLSIATAALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343
            MPLFVSSRYLLSIATAALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK
Sbjct:    1 MPLFVSSRYLLSIATAALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|585103332|gb|EWM22739.1| (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 664.07 bits (1712), Expect = 0.000e+0
Identity = 328/344 (95.35%), Postives = 332/344 (96.51%), Query Frame = 0
Query:    1 MPLFVSSRYLLSIATAALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARAGKTVRVTADLVVLDDQP-GRERAVRALPTADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343
            MPLFVSSRYLLSIATA LCLTSSFS AKIVVEDNFIDETTR+ALLAQLPSEMHRFKHTVD+PG VYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSI G D NRFIIQARAH LFARAGKTVRVTADLVVLDDQP GR+RAVRAL T DIVFACSLDPFFNFQSLT GNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGT+IPLYLSVP EWEQELGVVVK
Sbjct:    1 MPLFVSSRYLLSIATAVLCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSI-GDDPNRFIIQARAHHLFARAGKTVRVTADLVVLDDQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSVPFEWEQELGVVVK 343          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|553178404|ref|XP_005852549.1| (hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526] >gi|422295984|gb|EKU23283.1| hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.0998 bits (183), Expect = 1.368e-12
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 0
Query:  227 PTADIVFACSLDPFFNFQS----LTAGNKTSK-HRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343
            P  D++ +C L      Q     L  G+ T    R    D  +SF R K+ PNTWRPK+ Y  V   D L WTLP  G    K YKI   +R+G+ V SGT +PL + V ++W ++L V  K
Sbjct:   57 PVEDVIVSCLLGGNATVQGHATRLLQGHSTKVLKRARLGDEALSFQRGKLRPNTWRPKLRY--VKTNDELAWTLPVGGIVFGKTYKIKWRIRLGRGVASGTELPLTVRV-ADWMEDLVVTAK 175          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|585101591|gb|EWM21377.1| (hypothetical protein Naga_100424g5 [Nannochloropsis gaditana])

HSP 1 Score: 70.8626 bits (172), Expect = 1.284e-11
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0
Query:  261 DVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343
            D  +SF R  + PNTW+PK+ Y   D  D L WTLP+ G  L K YKI   + +G  V SGT +PL +SV +EW ++L V VK
Sbjct:   41 DEALSFKRGVLKPNTWKPKLRYVKTD--DELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSV-AEWMEDLVVSVK 120          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|585111994|gb|EWM29458.1| (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana])

HSP 1 Score: 70.0922 bits (170), Expect = 1.554e-10
Identity = 47/144 (32.64%), Postives = 69/144 (47.92%), Query Frame = 0
Query:  195 PLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVF------ACSLDPFFNFQSLTAGNKTS----KHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYL 328
            P+  +AG  V +T   + L+    R R +R L  AD +          +  + + + L+  NKT     K  K G    +   RS+I PNTWRPK+   I   G T   ++P+ G   L+ YKI    RIGK  PSG++I  Y+
Sbjct:   40 PISVKAGGRVTLTTSFLFLET---RRRQLRELAFADEILYWATPNEADIPAYGDLEELSNKNKTKTSHPKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNIT--GSTNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVITFYV 178          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|585103543|gb|EWM22885.1| (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 70.0922 bits (170), Expect = 1.910e-10
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0
Query:  233 FACSLDPFFN---FQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSV 330
            +  +++P  N   +++ TA NKTSK      DV ++  +++I+PNTWRPK        G + +  LP DG  L K+YKIT  +RIGK +PSGT +P  + V
Sbjct:   80 YGITVEPLVNSLSWKNHTAKNKTSKF---AGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFL-PLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGV 176          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|553176372|ref|XP_005852373.1| (hypothetical protein NGA_0690000 [Nannochloropsis gaditana CCMP526] >gi|422296155|gb|EKU23454.1| hypothetical protein NGA_0690000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-10
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 0
Query:  230 DIVFAC-------SLDPFFNFQSLTAGNKTS--KHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343
            D+V +C       +L    N   L  G+ T   K  + G D  +SF R K+ PNTWRPK+ Y  +   + L WTLP  G    K YKI   + +G++V SGT +PL + V ++W ++L V  K
Sbjct:    3 DVVVSCLLGGNTTTLHVQGNATRLLQGHSTKVLKRARLG-DEALSFKRGKLRPNTWRPKLRY--IKTNNELAWTLPVGGIVFGKTYKIKWRIHMGRSVASGTELPLTVRV-ADWMKDLVVTAK 121          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|553183816|ref|XP_005853972.1| (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >gi|422295089|gb|EKU22388.1| hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.1662 bits (165), Expect = 4.717e-10
Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 0
Query:  230 DIVFACSLDPF---FNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSV 330
            ++++  +++P     + ++ TA NKTSK      DV ++  +++I+PNTWRPKI       G + +  +P +G  L K+YK+T  +RIGK +PSGT +P  + V
Sbjct:   57 EVLYGITVEPLVSPLSSKNHTAKNKTSKF---AGDVDVTLRKTRISPNTWRPKIFANGTGTGTSFL-PMPLNGLVLSKQYKVTSKIRIGKGIPSGTYVPFQIFV 156          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|553184967|ref|XP_005854180.1| (hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526] >gi|553192556|ref|XP_005855596.1| hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >gi|422293459|gb|EKU20759.1| hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >gi|422294881|gb|EKU22181.1| hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 63.1586 bits (152), Expect = 1.059e-8
Identity = 37/87 (42.53%), Postives = 48/87 (55.17%), Query Frame = 0
Query:  244 QSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSV 330
            +S     K+SKH   G    +   RS+I PNTWRPK+   I   G T   ++P+ G  +LK YKI    RIGK  PSGT+I  Y+ V
Sbjct:   34 KSCIGHPKSSKH---GNSTDVRLVRSRIIPNTWRPKLRSNI--TGSTNFMSVPTTGLVVLKDYKIINKFRIGKRYPSGTVISFYVFV 115          
BLAST of EWM22730.1 vs. NCBI_GenBank
Match: gi|585102369|gb|EWM21985.1| (hypothetical protein Naga_100745g2 [Nannochloropsis gaditana])

HSP 1 Score: 65.0846 bits (157), Expect = 3.743e-8
Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 0
Query:  243 FQSLTAGNKTSK---HRKDGTDVG---ISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVV 342
            F SLT G + S      +    +G   ++F RS + PNTWRPK  Y IV  G+ +VW LP DG  L K YKI   +R+ + V SGT +P  L V S   Q+L V V
Sbjct:  236 FVSLTIGQEASASGFRNRTQKAIGARELTFKRSTLRPNTWRPKPRYSIV--GNEVVWQLPFDGFVLKKTYKIKWKLRVDRGVTSGTQLPFILRVGSNM-QDLMVTV 338          
The following BLAST results are available for this feature:
BLAST of EWM22730.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103321|gb|EWM22729.1|0.000e+0100.00hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
gi|585103332|gb|EWM22739.1|0.000e+095.35hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
gi|553178404|ref|XP_005852549.1|1.368e-1238.52hypothetical protein NGA_0710700, partial [Nannoch... [more]
gi|585101591|gb|EWM21377.1|1.284e-1146.99hypothetical protein Naga_100424g5 [Nannochloropsi... [more]
gi|585111994|gb|EWM29458.1|1.554e-1032.64hypothetical protein Naga_100083g24 [Nannochlorops... [more]
gi|585103543|gb|EWM22885.1|1.910e-1039.60hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
gi|553176372|ref|XP_005852373.1|2.605e-1036.59hypothetical protein NGA_0690000 [Nannochloropsis ... [more]
gi|553183816|ref|XP_005853972.1|4.717e-1035.58hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
gi|553184967|ref|XP_005854180.1|1.059e-842.53hypothetical protein NGA_0188501 [Nannochloropsis ... [more]
gi|585102369|gb|EWM21985.1|3.743e-842.45hypothetical protein Naga_100745g2 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7965rna7965Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications