rna7963, rna7963 (mRNA) Nannochloropsis gaditana

Overview
Namerna7963
Unique Namerna7963
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length621
Alignment locationKK037247.1:234466..235187 +

Link to JBrowse

Properties
Property NameValue
Productamino acid-polyamine-organocation family
Orig transcript idgnl|cribi|Naga_100209g8.4961.mrna
Orig protein idgnl|cribi|Naga_100209g8.4961
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:234466..235187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100209g8gene7712Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7963rna7963-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22735.1cds7941Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7963 ID=rna7963|Name=rna7963|organism=Nannochloropsis gaditana|type=mRNA|length=621bp
ATGCGGAAAGAATTAACCTCCGTGGACCCTGTGGTTCAACAAGCCTTCGA
TCAACTTCTCCTTCGACATCCAGATGTGGAAGCCATCCTCTTAAGCACTG
CTGACGGTATTCCTCTCATGCGTGCTGTACGGCCGACCTCTCCCTGCTTT
CCCTCCTCGACGGCGTCCTCCTCCCTCTCTACAATTGAAAGCAAAGTCTC
CGCCGTCTTCAGCATCGCTGTCGACCAGGCGCGGAAGCTCGGAAACGGGA
CGTGCAATTCCATTGTCTCGCTCTACCAGGGCCTGACCCTTGTGCAAATA
AATCTGGCCCCTCTCGTCCTCTCCTTCGTCGGCTACGCTACAATTCCTTC
AGCGGCGACAGTCCTGGCTTCCACCTCTGAAGGCAAGCCCGGTCAGGAAG
AGCAACGACACCATGAGGAAGGCCATGATTCAAGCGTGGCGGTTCCACTC
GGGGGGGAAGGTGGGAGGGAGGCCGGGCTTGTGCCTCCCCTTCCTCTGCA
ACTTATGAACGTTGGAATGATTTTGGACTCGCAGGCTGAGTTTCGCGAGG
CGCTGGCACCGTTGAGGGGAGTAGTAGAGGCGTCAGAGAGGGAAAGCACA
ACCAGCGGAAGAAGTCTGTAG
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protein sequence of rna7963

>rna7963-protein ID=rna7963-protein|Name=rna7963|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIG
GLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEA
LAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFFFSLCFLHIFVQHAKFR
NN
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mRNA from alignment at KK037247.1:234466..235187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7963 ID=rna7963|Name=rna7963|organism=Nannochloropsis gaditana|type=mRNA|length=722bp|location=Sequence derived from alignment at KK037247.1:234466..235187+ (Nannochloropsis gaditana)
ATGGGAGGCATGATTGGAGActggctttcccctccctctcctttacattc
cccttttccctcttgggGTACGATATTTCAAACCATCGTGGCAGTGGACG
CGCTCTTGGTGCTGTCCGGGAGCGTATTGACAGCTTATGTGGGAATAGGA
GGCTTAATCAGCAggtagagagagggagagggatggtgaagggaatggaa
aagaGGACAGGAAGATATAAGATGCTACATACACACACGCTTCGATGTAG
GATATCTGTTGCGTTCATTTTATCGTAAACGAATTCTTATCTGAAACAGA
CTGGCGATGGATCGGTGTTTCCCCTCCGTAGTCTTGCGAACAAACGTGTG
TCGTGGCACGTACACTGTGAGCATATGGAGCTTTTTCTTGATAGCAGCGA
GGTATACATGTGTCCTTGGAGGCATATCTTGGTCCTTTTCTCTATGGCTC
TTTCCTCGTAGTTCATGCTAGGCAAGGCCCCATATTtcacccttcttcct
cctttcctcttgtcACCTTTCACCTGCAGCCTTATACTCGTGCTGGATGA
CTCTGTCGAGGCGTTAGCTGGTGTCTACGCGCTATCGTTCCTCGCTGTGA
TGGCTTTATTCGCCATCGGCATCATGCTTCTCAAGGTCCTTCaatgccct
ctcccacatttcttcttttctctgtGTTTCCTCCATATCTTTGTCCAGCA
CGCAAAATTTCGGAACAATTga
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Coding sequence (CDS) from alignment at KK037247.1:234466..235187+

>rna7963 ID=rna7963|Name=rna7963|organism=Nannochloropsis gaditana|type=CDS|length=1377bp|location=Sequence derived from alignment at KK037247.1:234466..235187+ (Nannochloropsis gaditana)
ATGGGAGGCATGATTGGAGActggctttcccctccctctcctttacattc
cccttttccctcttgggGTACGATATTTCAAACCATCGTGGCAGTGGACG
CGCTCTTGGTGCTGTCCGGGAGCGTATTGACAGCTTATGTGGGAATAGGA
GGCTTAATCAGCAgACTGGCGATGGATCGGTGTTTCCCCTCCGTAGTCTT
GCGAACAAACGTGTGTCGTGGCACGTACACTGTGAGCATATGGAGCTTTT
TCTTGATAGCAGCGAGCCTTATACTCGTGCTGGATGACTCTGTCGAGGCG
TTAGCTGGTGTCTACGCGCTATCGTTCCTCGCTGTGATGGCTTTATTCGC
CATCGGCATCATGCTTCTCAAGGTCCTTCaatgccctctcccacatttct
tcttttctctgtGTTTCCTCCATATCTTTGTCCAGCACGCAAAATTTCGG
AACAATTgaATGGGAGGCATGATTGGAGActggctttcccctccctctcc
tttacattccccttttccctcttgggGTACGATATTTCAAACCATCGTGG
CAGTGGACGCGCTCTTGGTGCTGTCCGGGAGCGTATTGACAGCTTATGTG
GGAATAGGAGGCTTAATCAGCAgACTGGCGATGGATCGGTGTTTCCCCTC
CGTAGTCTTGCGAACAAACGTGTGTCGTGGCACGTACACTGTGAGCATAT
GGAGCTTTTTCTTGATAGCAGCGAGCCTTATACTCGTGCTGGATGACTCT
GTCGAGGCGTTAGCTGGTGTCTACGCGCTATCGTTCCTCGCTGTGATGGC
TTTATTCGCCATCGGCATCATGCTTCTCAAGGTCCTTCaatgccctctcc
cacatttcttcttttctctgtGTTTCCTCCATATCTTTGTCCAGCACGCA
AAATTTCGGAACAATTgaATGGGAGGCATGATTGGAGActggctttcccc
tccctctcctttacattccccttttccctcttgggGTACGATATTTCAAA
CCATCGTGGCAGTGGACGCGCTCTTGGTGCTGTCCGGGAGCGTATTGACA
GCTTATGTGGGAATAGGAGGCTTAATCAGCAgACTGGCGATGGATCGGTG
TTTCCCCTCCGTAGTCTTGCGAACAAACGTGTGTCGTGGCACGTACACTG
TGAGCATATGGAGCTTTTTCTTGATAGCAGCGAGCCTTATACTCGTGCTG
GATGACTCTGTCGAGGCGTTAGCTGGTGTCTACGCGCTATCGTTCCTCGC
TGTGATGGCTTTATTCGCCATCGGCATCATGCTTCTCAAGGTCCTTCaat
gccctctcccacatttcttcttttctctgtGTTTCCTCCATATCTTTGTC
CAGCACGCAAAATTTCGGAACAATTga
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Synonyms
Publications