EWM22735.1, cds7941 (CDS) Nannochloropsis gaditana

Overview
NameEWM22735.1
Unique Namecds7941
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:234466..234629 +
Alignment locationKK037247.1:234765..234866 +
Alignment locationKK037247.1:234995..235187 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22735.1
Productamino acid-polyamine-organocation family
Orig transcript idgnl|cribi|Naga_100209g8.4961.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:234466..234629 +
KK037247.1supercontigKK037247.1:234765..234866 +
KK037247.1supercontigKK037247.1:234995..235187 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0003333amino acid transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015171amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002293AA/rel_permease1
Homology
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|585103328|gb|EWM22735.1| (amino acid-polyamine-organocation family [Nannochloropsis gaditana])

HSP 1 Score: 304.294 bits (778), Expect = 1.196e-104
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query:    1 MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFFFSLCFLHIFVQHAKFRNN 152
            MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFFFSLCFLHIFVQHAKFRNN
Sbjct:    1 MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFFFSLCFLHIFVQHAKFRNN 152          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|298710950|emb|CBJ32260.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.472 bits (293), Expect = 1.179e-27
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 0
Query:    1 MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
            M   +G W      L +P    G IF   V++DA +VLSG+VLTAYVGI GL++R+A DRC P  +LR N  RGTY  +I+ FFL+A S +++L   +  L+GVY  SFL VM LF++G +LLK  +  LP 
Sbjct:  440 MAKRVGYWAGGCLGLPTPGLDLGEIFAFWVSLDAFVVLSGAVLTAYVGISGLLARMAKDRCLPQFMLRKNKWRGTYHYTIFGFFLLATSQVIILQGDITTLSGVYTFSFLGVMTLFSVGTILLKFKRPSLPR 571          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|698814378|ref|XP_009840218.1| (hypothetical protein H257_14159 [Aphanomyces astaci] >gi|574104730|gb|ETV70258.1| hypothetical protein H257_14159 [Aphanomyces astaci])

HSP 1 Score: 111.309 bits (277), Expect = 1.553e-25
Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 0
Query:   23 GTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
            G  F+T+V +DA +VLSG+VLTAYVGI GLI RLA DR  P  +L  N  RGT    +W +F +A SL+LVL   VE L+GVY  +FL +M LF  G MLLK  +  LP 
Sbjct:  341 GHTFETLVTLDAFIVLSGAVLTAYVGINGLIRRLASDRVVPPFLLHENTWRGTNHWILWGYFAVATSLVLVLRGDVETLSGVYTYAFLGLMTLFGSGCMLLKYKRAALPR 450          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|698814376|ref|XP_009840217.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574104731|gb|ETV70259.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 110.923 bits (276), Expect = 1.673e-25
Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 0
Query:   23 GTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
            G  F+T+V +DA +VLSG+VLTAYVGI GLI RLA DR  P  +L  N  RGT    +W +F +A SL+LVL   VE L+GVY  +FL +M LF  G MLLK  +  LP 
Sbjct:  341 GHTFETLVTLDAFIVLSGAVLTAYVGINGLIRRLASDRVVPPFLLHENTWRGTNHWILWGYFAVATSLVLVLRGDVETLSGVYTYAFLGLMTLFGSGCMLLKYKRAALPR 450          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|1072223691|gb|OEU08445.1| (hypothetical protein FRACYDRAFT_212710 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 108.612 bits (270), Expect = 1.124e-24
Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 0
Query:    1 MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
            M  ++G+W      +   + S G++F  I++VDA +VL+ ++LT YVGI GLI R++MDRC P   L +N   GT +  +  FFL+  S +++LD  VEAL GVY  +FL VM +FA+G +LLK+ +  LP 
Sbjct:  339 MARVVGEWFQGCLFIPEHYVSLGSLFSFIISVDAFIVLAAALLTGYVGINGLIRRMSMDRCLPQFFLISNPWTGTDSFILCGFFLLCVSQVILLDSDVEALGGVYCYAFLTVMTIFALGNILLKIKRPTLPR 470          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|931398509|gb|KPJ87386.1| (amino acid permease [Gemmatimonas sp. SG8_17])

HSP 1 Score: 108.612 bits (270), Expect = 1.174e-24
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 0
Query:   30 VAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
            V++DA+LVLSG+VLT+YVG+ GL+ R+++DRC P V+L  N  RGT    I SFF +  S++LV   +++ LAGVY LSFL+VMAL+A+G MLLK  +  LP 
Sbjct:  267 VSLDAVLVLSGAVLTSYVGVTGLVRRMSLDRCLPQVLLHENRWRGTNHWIILSFFALCTSILLVTHGTIQTLAGVYTLSFLSVMALYAVGNMLLKRTRARLPR 369          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|1175012307|emb|SMC27806.1| (Amino acid transporter [Desulfacinum hydrothermale DSM 13146])

HSP 1 Score: 108.227 bits (269), Expect = 1.362e-24
Identity = 58/119 (48.74%), Postives = 84/119 (70.59%), Query Frame = 0
Query:   16 HSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFF 134
            H  F + G +FQ IV VDA+LVLSG+VLT+YVG+ GL+ R+A+D+CFP ++L+ N  RGT    I +FFL+ +S++L+   ++ ALAGVY +SFL VM LF  G +LLK+ +  L   +
Sbjct:  282 HVAFLTGGELFQRIVVVDAVLVLSGAVLTSYVGVCGLVRRMALDQCFPGLLLKQNR-RGTSHRIILAFFLLCSSILLLTRGNLLALAGVYTISFLGVMTLFGWGNILLKLRRSQLKRTY 399          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|1180572226|ref|WP_084058974.1| (amino acid permease [Desulfacinum hydrothermale])

HSP 1 Score: 108.227 bits (269), Expect = 1.425e-24
Identity = 58/119 (48.74%), Postives = 84/119 (70.59%), Query Frame = 0
Query:   16 HSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFF 134
            H  F + G +FQ IV VDA+LVLSG+VLT+YVG+ GL+ R+A+D+CFP ++L+ N  RGT    I +FFL+ +S++L+   ++ ALAGVY +SFL VM LF  G +LLK+ +  L   +
Sbjct:  285 HVAFLTGGELFQRIVVVDAVLVLSGAVLTSYVGVCGLVRRMALDQCFPGLLLKQNR-RGTSHRIILAFFLLCSSILLLTRGNLLALAGVYTISFLGVMTLFGWGNILLKLRRSQLKRTY 402          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|673022414|ref|XP_008865168.1| (hypothetical protein H310_03163 [Aphanomyces invadans] >gi|574480099|gb|ETW07093.1| hypothetical protein H310_03163 [Aphanomyces invadans])

HSP 1 Score: 108.227 bits (269), Expect = 1.611e-24
Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 0
Query:   23 GTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFF---FSLCFLHIFVQHAKFRNN 152
            G  F+T+V +DA +VLSG+VLTAYVGI GLI RLA DR  P  +L  N  R T    +W +F +A SL+LVL   VE L+GVY  +FL +M LF  G MLLK  +  LP      +S C   + +  A F  N
Sbjct:  339 GQTFETLVTLDAFIVLSGAVLTAYVGINGLIRRLASDRVVPPFLLHENAWRHTNHWILWGYFGVATSLVLVLRGDVETLSGVYTYAFLGLMTLFGTGCMLLKYKRAALPRDVIAPWSACLTGVMLVVAAFFGN 471          
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|695435115|ref|XP_009531598.1| (hypothetical protein PHYSODRAFT_562553 [Phytophthora sojae] >gi|348674350|gb|EGZ14169.1| hypothetical protein PHYSODRAFT_562553 [Phytophthora sojae])

HSP 1 Score: 106.686 bits (265), Expect = 5.648e-24
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 0
Query:   21 SWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
            S G   + +VA+DA  VL+G+VLTAYVGI GL  RLA+DR  P+ +LR N CRGT    I +FFL+A+SL+ +L+  V  L+GV+AL+FL V+  F I  +LLK+ +  +P 
Sbjct:  336 SGGRWLEVLVAIDAFGVLAGAVLTAYVGINGLFQRLAIDRVLPTFLLRVNSCRGTNHYIILTFFLVASSLVFILNAEVTVLSGVFALAFLCVLLSFTIACLLLKICREEIPR 447          
The following BLAST results are available for this feature:
BLAST of EWM22735.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103328|gb|EWM22735.1|1.196e-104100.00amino acid-polyamine-organocation family [Nannochl... [more]
gi|298710950|emb|CBJ32260.1|1.179e-2746.97conserved unknown protein [Ectocarpus siliculosus][more]
gi|698814378|ref|XP_009840218.1|1.553e-2552.73hypothetical protein H257_14159 [Aphanomyces astac... [more]
gi|698814376|ref|XP_009840217.1|1.673e-2552.73hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|1072223691|gb|OEU08445.1|1.124e-2442.42hypothetical protein FRACYDRAFT_212710 [Fragilario... [more]
gi|931398509|gb|KPJ87386.1|1.174e-2453.40amino acid permease [Gemmatimonas sp. SG8_17][more]
gi|1175012307|emb|SMC27806.1|1.362e-2448.74Amino acid transporter [Desulfacinum hydrothermale... [more]
gi|1180572226|ref|WP_084058974.1|1.425e-2448.74amino acid permease [Desulfacinum hydrothermale][more]
gi|673022414|ref|XP_008865168.1|1.611e-2446.62hypothetical protein H310_03163 [Aphanomyces invad... [more]
gi|695435115|ref|XP_009531598.1|5.648e-2449.11hypothetical protein PHYSODRAFT_562553 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7963rna7963Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications