EWM22735.1, cds7941 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|585103328|gb|EWM22735.1| (amino acid-polyamine-organocation family [Nannochloropsis gaditana]) HSP 1 Score: 304.294 bits (778), Expect = 1.196e-104 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query: 1 MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFFFSLCFLHIFVQHAKFRNN 152
MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFFFSLCFLHIFVQHAKFRNN
Sbjct: 1 MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFFFSLCFLHIFVQHAKFRNN 152
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|298710950|emb|CBJ32260.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 117.472 bits (293), Expect = 1.179e-27 Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 0
Query: 1 MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
M +G W L +P G IF V++DA +VLSG+VLTAYVGI GL++R+A DRC P +LR N RGTY +I+ FFL+A S +++L + L+GVY SFL VM LF++G +LLK + LP
Sbjct: 440 MAKRVGYWAGGCLGLPTPGLDLGEIFAFWVSLDAFVVLSGAVLTAYVGISGLLARMAKDRCLPQFMLRKNKWRGTYHYTIFGFFLLATSQVIILQGDITTLSGVYTFSFLGVMTLFSVGTILLKFKRPSLPR 571
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|698814378|ref|XP_009840218.1| (hypothetical protein H257_14159 [Aphanomyces astaci] >gi|574104730|gb|ETV70258.1| hypothetical protein H257_14159 [Aphanomyces astaci]) HSP 1 Score: 111.309 bits (277), Expect = 1.553e-25 Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 0
Query: 23 GTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
G F+T+V +DA +VLSG+VLTAYVGI GLI RLA DR P +L N RGT +W +F +A SL+LVL VE L+GVY +FL +M LF G MLLK + LP
Sbjct: 341 GHTFETLVTLDAFIVLSGAVLTAYVGINGLIRRLASDRVVPPFLLHENTWRGTNHWILWGYFAVATSLVLVLRGDVETLSGVYTYAFLGLMTLFGSGCMLLKYKRAALPR 450
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|698814376|ref|XP_009840217.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574104731|gb|ETV70259.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 110.923 bits (276), Expect = 1.673e-25 Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 0
Query: 23 GTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
G F+T+V +DA +VLSG+VLTAYVGI GLI RLA DR P +L N RGT +W +F +A SL+LVL VE L+GVY +FL +M LF G MLLK + LP
Sbjct: 341 GHTFETLVTLDAFIVLSGAVLTAYVGINGLIRRLASDRVVPPFLLHENTWRGTNHWILWGYFAVATSLVLVLRGDVETLSGVYTYAFLGLMTLFGSGCMLLKYKRAALPR 450
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|1072223691|gb|OEU08445.1| (hypothetical protein FRACYDRAFT_212710 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 108.612 bits (270), Expect = 1.124e-24 Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 0
Query: 1 MGGMIGDWLSPPSPLHSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
M ++G+W + + S G++F I++VDA +VL+ ++LT YVGI GLI R++MDRC P L +N GT + + FFL+ S +++LD VEAL GVY +FL VM +FA+G +LLK+ + LP
Sbjct: 339 MARVVGEWFQGCLFIPEHYVSLGSLFSFIISVDAFIVLAAALLTGYVGINGLIRRMSMDRCLPQFFLISNPWTGTDSFILCGFFLLCVSQVILLDSDVEALGGVYCYAFLTVMTIFALGNILLKIKRPTLPR 470
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|931398509|gb|KPJ87386.1| (amino acid permease [Gemmatimonas sp. SG8_17]) HSP 1 Score: 108.612 bits (270), Expect = 1.174e-24 Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 0
Query: 30 VAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
V++DA+LVLSG+VLT+YVG+ GL+ R+++DRC P V+L N RGT I SFF + S++LV +++ LAGVY LSFL+VMAL+A+G MLLK + LP
Sbjct: 267 VSLDAVLVLSGAVLTSYVGVTGLVRRMSLDRCLPQVLLHENRWRGTNHWIILSFFALCTSILLVTHGTIQTLAGVYTLSFLSVMALYAVGNMLLKRTRARLPR 369
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|1175012307|emb|SMC27806.1| (Amino acid transporter [Desulfacinum hydrothermale DSM 13146]) HSP 1 Score: 108.227 bits (269), Expect = 1.362e-24 Identity = 58/119 (48.74%), Postives = 84/119 (70.59%), Query Frame = 0
Query: 16 HSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFF 134
H F + G +FQ IV VDA+LVLSG+VLT+YVG+ GL+ R+A+D+CFP ++L+ N RGT I +FFL+ +S++L+ ++ ALAGVY +SFL VM LF G +LLK+ + L +
Sbjct: 282 HVAFLTGGELFQRIVVVDAVLVLSGAVLTSYVGVCGLVRRMALDQCFPGLLLKQNR-RGTSHRIILAFFLLCSSILLLTRGNLLALAGVYTISFLGVMTLFGWGNILLKLRRSQLKRTY 399
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|1180572226|ref|WP_084058974.1| (amino acid permease [Desulfacinum hydrothermale]) HSP 1 Score: 108.227 bits (269), Expect = 1.425e-24 Identity = 58/119 (48.74%), Postives = 84/119 (70.59%), Query Frame = 0
Query: 16 HSPFPSWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFF 134
H F + G +FQ IV VDA+LVLSG+VLT+YVG+ GL+ R+A+D+CFP ++L+ N RGT I +FFL+ +S++L+ ++ ALAGVY +SFL VM LF G +LLK+ + L +
Sbjct: 285 HVAFLTGGELFQRIVVVDAVLVLSGAVLTSYVGVCGLVRRMALDQCFPGLLLKQNR-RGTSHRIILAFFLLCSSILLLTRGNLLALAGVYTISFLGVMTLFGWGNILLKLRRSQLKRTY 402
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|673022414|ref|XP_008865168.1| (hypothetical protein H310_03163 [Aphanomyces invadans] >gi|574480099|gb|ETW07093.1| hypothetical protein H310_03163 [Aphanomyces invadans]) HSP 1 Score: 108.227 bits (269), Expect = 1.611e-24 Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 0
Query: 23 GTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPHFF---FSLCFLHIFVQHAKFRNN 152
G F+T+V +DA +VLSG+VLTAYVGI GLI RLA DR P +L N R T +W +F +A SL+LVL VE L+GVY +FL +M LF G MLLK + LP +S C + + A F N
Sbjct: 339 GQTFETLVTLDAFIVLSGAVLTAYVGINGLIRRLASDRVVPPFLLHENAWRHTNHWILWGYFGVATSLVLVLRGDVETLSGVYTYAFLGLMTLFGTGCMLLKYKRAALPRDVIAPWSACLTGVMLVVAAFFGN 471
BLAST of EWM22735.1 vs. NCBI_GenBank
Match: gi|695435115|ref|XP_009531598.1| (hypothetical protein PHYSODRAFT_562553 [Phytophthora sojae] >gi|348674350|gb|EGZ14169.1| hypothetical protein PHYSODRAFT_562553 [Phytophthora sojae]) HSP 1 Score: 106.686 bits (265), Expect = 5.648e-24 Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 21 SWGTIFQTIVAVDALLVLSGSVLTAYVGIGGLISRLAMDRCFPSVVLRTNVCRGTYTVSIWSFFLIAASLILVLDDSVEALAGVYALSFLAVMALFAIGIMLLKVLQCPLPH 132
S G + +VA+DA VL+G+VLTAYVGI GL RLA+DR P+ +LR N CRGT I +FFL+A+SL+ +L+ V L+GV+AL+FL V+ F I +LLK+ + +P
Sbjct: 336 SGGRWLEVLVAIDAFGVLAGAVLTAYVGINGLFQRLAIDRVLPTFLLRVNSCRGTNHYIILTFFLVASSLVFILNAEVTVLSGVFALAFLCVLLSFTIACLLLKICREEIPR 447 The following BLAST results are available for this feature:
BLAST of EWM22735.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|