rna7962, rna7962 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7962
Unique Name	rna7962
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2945
Alignment location	KK037247.1:230819..231969 -

Link to JBrowse

Properties


Property Name	Value
Product	Mitogen-activated protein kinase kinase 1 interacting
Orig transcript id	gnl\|cribi\|Naga_100209g7.4966.mrna
Orig protein id	gnl\|cribi\|Naga_100209g7.4966
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:230819..231969 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100209g7	gene7711	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7962	rna7962-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22740.1	cds7940	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:230819..231969-
coding sequence from alignment at KK037247.1:230819..231969-

mRNA sequence

>rna7962 ID=rna7962|Name=rna7962|organism=Nannochloropsis gaditana|type=mRNA|length=2945bp
TCAAATAACTTCAACTGATAGCACTTCAGCCATTTTCTTCAAATCGACCC
ACGTCCTAATGTTTTCACTCCAACACAACACATCTATGAAGGGATGATCA
ATAGTTCATCCTCTGGGACCTGATAATGGCCTTACCTGCGATGTTCAGAG
GACTTCTTTTCGACACTTCTTTTGATGGGACCTATTGCGAGCCTTACACG
ATAGTCATCTGGAGCAGCTACATCTTGACTTTGCTAATACAATTTCTCAG
CCACCTTGCATGCAGCACTCTTTTCCCTGTTACGTATTCTAACCTGCCTC
CGCCCAAGCGCGACGAATGGAACACACGTATCTGTTCCACAATCCATGCG
CTTATTTCGAGTGCCTTTTCTTTACGTGTGATGTGTACTGAGGGACCTTC
TTTGTACGACAACGTGCGCCATAAGTCCTACCTTGCACCGATTTGCATCG
CAATTACTACAGGCTATCTCTTGGGGGTAAGTTCGAAATGCGTACAATTT
CCGGGGGAGAACTAGCTGAAACAATCAGACTTTCGGTCTGCACCACCGTT
GGATGATAAATACAGGATGCTACTCTAGTCTTCTATTCCACTCTGCCTCG
AACCTTCCAGTCCACCATCTTTCCCTACGGCCCCGTCTCCTCCCCCCTCC
CTACCCTCGCCCACCACCTGCTGGGGGCCCTGGCCTTTATTTCTTCGCTG
TATTTTCAGGCAGGGTATGCATTGCTTCCTTTCATTTTCACTTTGCTTTT
CCTTTTTTCCCTCCAAAAACGCCTAACTCTTTTGCCTTCGAGCCTTTGTA
TGACATCATCATCCATTCAATGTCTGACATTGGCCCTGTGCAAAGAGGGC
AAAGCGCCTTTCCACCTCACCACACCCCAAATCTCGTTTCCTCCCTTCCC
ATGCCATCTGGCTTCGGCCCAAGGTATATCCTGTCCATCATGTTCATCGC
CACCGAACTCTCTACACCGTTTGTGAACGTACGCTGGCACCTCCTGCATG
TGACACCACCACAGGGCTCGCTGTCGGTCTCCACGACCAGGCCAATGCAT
TCAAAAAGATGCTTGCCTGACGTACACTCAAAGAGCGATGTCAACAAGCC
AGACCAAGCGGGATTACTGTCCACCCTGAAACTTGTGAACGACGTTGTAT
TGGTAGTAGTTTTCGCAATTTCTCGGGTCTGTGCACTCCCCTTCCAGCTG
CGGATGGTCGTGAAGCACGCGGGGCCACTGGGAAGAGCAAGTGCTAGCTG
GGTCATGGTGCAGTGCGTCTTGAGTTTTGTGGTCATTGCCTGTCTCAACC
TGTGGTGGTTCGGGAGAATGCTTCGGTTACTGGGCAGACAAGGAAAGATG
AATAGTAAGGACGCAGAGTAGGCGTTGAAGGAAAAGGGATTGGGGGACCC
TCCTTTTCCTCCCCTACCCTGCTCTCAGTGCTGTGCTTGTGTGAATGTAT
AACTTATAGCACCTGAATTGATCGAACCACACAACCATCATCGTGCTTTG
GGGCTGATAAGGGCTATTCCGTCGCATGAACCCTGTCTTTCCGAAACACC
AGTGATGACCTTAAGCCAGCGTCCATGACACCATGATTGAGGATGGGAAA
GAAATGCGAAGCGCACTTGCATGAAAAGTCGCATTTATTCATTTTACCGC
TCCATTTCATTCCCCTTTATTTATTTCGATGATTTCCGCCCTATATCTAC
AGACTTCTTCCGCTGGTTGTGCTTTCCCTCTCTGACGCCTCTACTACTCC
CCTCAACGGTGCCAGCGCCTCGCGAAACTCAGCCTGCGAGTCCAAAATCA
TTCCAACGTTCATAAGTTGCAGAGGAAGGGGAGGCACAAGCCCGGCCTCC
CTCCCACCTTCCCCCCCGAGTGGAACCGCCACGCTTGAATCATGGCCTTC
CTCATGGTGTCGTTGCTCTTCCTGACCGGGCTTGCCTTCAGAGGTGGAAG
CCAGGACTGTCGCCGCTGAAGGAATTGTAGCGTAGCCGACGAAGGAGAGG
ACGAGAGGGGCCAGATTTATTTGCACAAGGGTCAGGCCCTGGTAGAGCGA
GACAATGGAATTGCACGTCCCGTTTCCGAGCTTCCGCGCCTGGTCGACAG
CGATGCTGAAGACGGCGGAGACTTTGCTTTCAATTGTAGAGAGGGAGGAG
GACGCCGTCGAGGAGGGAAAGCAGGGAGAGGTCGGCCGTACAGCTGTAGG
ATTGAATGGACCACGGTATTAGCCCCTGGCGAGGCTTCGTATGTGAAGCT
AGGCATCCAAACATAAGATTGAGCTATTCCAACGTTGGAAGGAGAATTTG
CGGCAACTCTATTCGTCAACAATCGACAACCCTCCTTTCCCTATAAACAT
AAAGACGATGCGACATAGTCCTACCACGCATGAGAGGAATACCGTCAGCA
GTGCTTAAGAGGATGGCTTCCACATCTGGATGTCGAAGGAGAAGTTGATC
GAAGGCTTGTTGAACCACAGGGTCCTGGCAGAAATCGCGTGAGAAGTGGA
AAATCATGAGTTGGAGACCATAAAAGGAACATAACACACCTAAGGCTTCT
CCCCCCTGCCGCTAAAGCAAGTCAGAAATTGGAAAAAATAGGTTTGATGA
TCGGTCTTCAGAGGAGAAGCCTTATTGCTACGTGAAGTTAAGAATGTTCT
CGCGATCTTCTCCTCATCTCCCCTCCTCGCATCTCCCTTTCTCTCCCCTT
TCTTCTCCTCTCTCTCCACCGCCCTTTCCTTTTCTTTCTTGTCGTCAGAC
ATGAATGATAACATGGAGCTACTTTGCCTCGCAGCCGAGATGAGGAAGCA
GAGCATGAAGTAAAGTGACTTACCACGGAGGTTAATTCTTTCCGCATGAA
TGGCACTAACAACACAATTGAGCCCAAGACGTCTAGGCGTCCGTCTGTAA
GCGATATAAACAGCAGAAGATGAGGTAGGGGACATAAAATGTCAT

protein sequence of rna7962

>rna7962-protein ID=rna7962-protein|Name=rna7962|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MRKELTSVDPVVQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCF
PSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQI
NLAPLVLSFVGYATIPSAATVLASTSEGKPGQEEQRHHEEGHDSSVAVPL
GGEGGREAGLVPPLPLQLMNVGMILDSQAEFREALAPLRGVVEASEREST
TSGRSL

mRNA from alignment at KK037247.1:230819..231969-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7962 ID=rna7962|Name=rna7962|organism=Nannochloropsis gaditana|type=mRNA|length=1151bp|location=Sequence derived from alignment at KK037247.1:230819..231969- (Nannochloropsis gaditana)
ATGCGGAAAGAATTAACCTCCGTGGTAAGTCACTTTACTTCATGCTCTGC
TTCCTCATCTCGGCTGCGAGGCAAAGTAGCTCCATGTTATCATTCATGTC
TGACGACAAGAAAGAAAAGGAAAGGGCGGTGGAGAGAGAGGAGAAGAAAG
GGGAGAGAAAGGGAGATGCGAGGAGGGGAGATGAGGAGAAGATCGCGAGA
ACATTCTTAACTTCACGTAGCAATAAGGCTTCTCCTCTGAAGACCGATCA
TCAAACCTATTTTTTCCAATTTCTGACTTGCTTTAGCGGCAGGGGGGAGA
AGCCTTAGGTGTGTTATGTTCCTTTTATGGTCTCCAACTCATGATTTTCC
ACTTCTCACGCGATTTCTGCCAGGACCCTGTGGTTCAACAAGCCTTCGAT
CAACTTCTCCTTCGACATCCAGATGTGGAAGCCATCCTCTTAAGCACTGC
TGACGGTATTCCTCTCATGCGTGGTAGGACTATGTCGCATCGTCTTTATG
TTTATAGGGAAAGGAGGGTTGTCGATTGTTGACGAATAGAGTTGCCGCAA
ATTCTCCTTCCAACGTTGGAATAGCTCAATCTTATGTTTGGATGCCTAGC
TTCACATACGAAGCCTCGCCAGGGGCTAATACCGTGGTCCATTCAATCCT
ACAGCTGTACGGCCGACCTCTCCCTGCTTTCCCTCCTCGACGGCGTCCTC
CTCCCTCTCTACAATTGAAAGCAAAGTCTCCGCCGTCTTCAGCATCGCTG
TCGACCAGGCGCGGAAGCTCGGAAACGGGACGTGCAATTCCATTGTCTCG
CTCTACCAGGGCCTGACCCTTGTGCAAATAAATCTGGCCCCTCTCGTCCT
CTCCTTCGTCGGCTACGCTACAATTCCTTCAGCGGCGACAGTCCTGGCTT
CCACCTCTGAAGGCAAGCCCGGTCAGGAAGAGCAACGACACCATGAGGAA
GGCCATGATTCAAGCGTGGCGGTTCCACTCGGGGGGGAAGGTGGGAGGGA
GGCCGGGCTTGTGCCTCCCCTTCCTCTGCAACTTATGAACGTTGGAATGA
TTTTGGACTCGCAGGCTGAGTTTCGCGAGGCGCTGGCACCGTTGAGGGGA
GTAGTAGAGGCGTCAGAGAGGGAAAGCACAACCAGCGGAAGAAGTCTGTA
G

Coding sequence (CDS) from alignment at KK037247.1:230819..231969-

>rna7962 ID=rna7962|Name=rna7962|organism=Nannochloropsis gaditana|type=CDS|length=1863bp|location=Sequence derived from alignment at KK037247.1:230819..231969- (Nannochloropsis gaditana)
CTGTACGGCCGACCTCTCCCTGCTTTCCCTCCTCGACGGCGTCCTCCTCC
CTCTCTACAATTGAAAGCAAAGTCTCCGCCGTCTTCAGCATCGCTGTCGA
CCAGGCGCGGAAGCTCGGAAACGGGACGTGCAATTCCATTGTCTCGCTCT
ACCAGGGCCTGACCCTTGTGCAAATAAATCTGGCCCCTCTCGTCCTCTCC
TTCGTCGGCTACGCTACAATTCCTTCAGCGGCGACAGTCCTGGCTTCCAC
CTCTGAAGGCAAGCCCGGTCAGGAAGAGCAACGACACCATGAGGAAGGCC
ATGATTCAAGCGTGGCGGTTCCACTCGGGGGGGAAGGTGGGAGGGAGGCC
GGGCTTGTGCCTCCCCTTCCTCTGCAACTTATGAACGTTGGAATGATTTT
GGACTCGCAGGCTGAGTTTCGCGAGGCGCTGGCACCGTTGAGGGGAGTAG
TAGAGGCGTCAGAGAGGGAAAGCACAACCAGCGGAAGAAGTCTGTAGGAC
CCTGTGGTTCAACAAGCCTTCGATCAACTTCTCCTTCGACATCCAGATGT
GGAAGCCATCCTCTTAAGCACTGCTGACGGTATTCCTCTCATGCGTGATG
CGGAAAGAATTAACCTCCGTGCTGTACGGCCGACCTCTCCCTGCTTTCCC
TCCTCGACGGCGTCCTCCTCCCTCTCTACAATTGAAAGCAAAGTCTCCGC
CGTCTTCAGCATCGCTGTCGACCAGGCGCGGAAGCTCGGAAACGGGACGT
GCAATTCCATTGTCTCGCTCTACCAGGGCCTGACCCTTGTGCAAATAAAT
CTGGCCCCTCTCGTCCTCTCCTTCGTCGGCTACGCTACAATTCCTTCAGC
GGCGACAGTCCTGGCTTCCACCTCTGAAGGCAAGCCCGGTCAGGAAGAGC
AACGACACCATGAGGAAGGCCATGATTCAAGCGTGGCGGTTCCACTCGGG
GGGGAAGGTGGGAGGGAGGCCGGGCTTGTGCCTCCCCTTCCTCTGCAACT
TATGAACGTTGGAATGATTTTGGACTCGCAGGCTGAGTTTCGCGAGGCGC
TGGCACCGTTGAGGGGAGTAGTAGAGGCGTCAGAGAGGGAAAGCACAACC
AGCGGAAGAAGTCTGTAGGACCCTGTGGTTCAACAAGCCTTCGATCAACT
TCTCCTTCGACATCCAGATGTGGAAGCCATCCTCTTAAGCACTGCTGACG
GTATTCCTCTCATGCGTGATGCGGAAAGAATTAACCTCCGTGCTGTACGG
CCGACCTCTCCCTGCTTTCCCTCCTCGACGGCGTCCTCCTCCCTCTCTAC
AATTGAAAGCAAAGTCTCCGCCGTCTTCAGCATCGCTGTCGACCAGGCGC
GGAAGCTCGGAAACGGGACGTGCAATTCCATTGTCTCGCTCTACCAGGGC
CTGACCCTTGTGCAAATAAATCTGGCCCCTCTCGTCCTCTCCTTCGTCGG
CTACGCTACAATTCCTTCAGCGGCGACAGTCCTGGCTTCCACCTCTGAAG
GCAAGCCCGGTCAGGAAGAGCAACGACACCATGAGGAAGGCCATGATTCA
AGCGTGGCGGTTCCACTCGGGGGGGAAGGTGGGAGGGAGGCCGGGCTTGT
GCCTCCCCTTCCTCTGCAACTTATGAACGTTGGAATGATTTTGGACTCGC
AGGCTGAGTTTCGCGAGGCGCTGGCACCGTTGAGGGGAGTAGTAGAGGCG
TCAGAGAGGGAAAGCACAACCAGCGGAAGAAGTCTGTAGGACCCTGTGGT
TCAACAAGCCTTCGATCAACTTCTCCTTCGACATCCAGATGTGGAAGCCA
TCCTCTTAAGCACTGCTGACGGTATTCCTCTCATGCGTGATGCGGAAAGA
ATTAACCTCCGTG

Synonyms

Publications