EWM22740.1, cds7940 (CDS) Nannochloropsis gaditana

Overview
NameEWM22740.1
Unique Namecds7940
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:231946..231969 -
Alignment locationKK037247.1:231497..231596 -
Alignment locationKK037247.1:230819..231315 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22740.1
ProductMitogen-activated protein kinase kinase 1 interacting
Orig transcript idgnl|cribi|Naga_100209g7.4966.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:231946..231969 -
KK037247.1supercontigKK037247.1:231497..231596 -
KK037247.1supercontigKK037247.1:230819..231315 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO:0032006regulation of TOR signaling
Vocabulary: INTERPRO
TermDefinition
IPR015019LAMTOR3
Homology
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|585103333|gb|EWM22740.1| (Mitogen-activated protein kinase kinase 1 interacting [Nannochloropsis gaditana])

HSP 1 Score: 411.764 bits (1057), Expect = 2.465e-145
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MRKELTSVDPVVQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVGYATIPSAATVLASTSEGKPGQEEQRHHEEGHDSSVAVPLGGEGGREAGLVPPLPLQLMNVGMILDSQAEFREALAPLRGVVEASERESTTSGRSL 206
            MRKELTSVDPVVQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVGYATIPSAATVLASTSEGKPGQEEQRHHEEGHDSSVAVPLGGEGGREAGLVPPLPLQLMNVGMILDSQAEFREALAPLRGVVEASERESTTSGRSL
Sbjct:    1 MRKELTSVDPVVQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVGYATIPSAATVLASTSEGKPGQEEQRHHEEGHDSSVAVPLGGEGGREAGLVPPLPLQLMNVGMILDSQAEFREALAPLRGVVEASERESTTSGRSL 206          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|923124784|ref|XP_013755860.1| (mitogen-activated protein kinase scaffold protein 1 [Thecamonas trahens ATCC 50062] >gi|906558488|gb|KNC51731.1| mitogen-activated protein kinase scaffold protein 1 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 71.2478 bits (173), Expect = 2.550e-12
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 0
Query:   16 FDQLLLRHPDVEAILLSTADGIPLMRAVRPTSP------CFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVGYATIPSAATVLASTSEGKPGQE 133
            F++LL R   +E+ILL+ + G  L++  RP +          +   +   + +E  +S VF +A DQA KLG G  +S++S Y+   +VQ+N+APLVLSF+G   + +A  VLA   E   G E
Sbjct:    8 FEELLTRVHGLESILLTDSQGAVLLQVTRPVAEDKVEGAADGAEADAGEATVLEPAMSGVFVMACDQAAKLGIGATSSMISYYENNVIVQLNVAPLVLSFIGSHQV-NAGAVLAMAPELYAGLE 130          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|1183356089|gb|ORX83733.1| (mitogen-activated protein kinase [Anaeromyces robustus])

HSP 1 Score: 62.003 bits (149), Expect = 6.108e-9
Identity = 31/100 (31.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   12 VQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVG 111
            +Q+ FD ++ +   ++AI++S  DG+ L   ++ T+P F       SL+ I+S +S  F++A DQ  K+G     SI + Y+   ++Q N  PL+++F+ 
Sbjct:    3 IQKEFDNIISKTQGLQAIIVSDKDGVIL---IQSTNPAF-------SLNNIDSSLSTSFAVACDQIGKIGLSKNKSITTFYKYHQMIQFNYNPLIITFIA 92          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|1183399726|gb|ORY24427.1| (Roadblock/LC7 domain-containing protein [Neocallimastix californiae])

HSP 1 Score: 61.6178 bits (148), Expect = 7.359e-9
Identity = 31/100 (31.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   12 VQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVG 111
            +Q+ FD ++ +   ++AI++S  DG+ L   ++ T+P F       SL+ I+S +S  F++A DQ  K+G     SI + Y+   ++Q N  PL+++F+ 
Sbjct:    3 IQKDFDSIISKTQGLQAIIVSDKDGVVL---IQSTNPAF-------SLNNIDSSLSTSFAVACDQIGKIGLSKNKSITTFYKYHQIIQFNYNPLIITFIA 92          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|1183324007|gb|ORX53787.1| (Roadblock/LC7 domain-containing protein [Piromyces finnis])

HSP 1 Score: 59.3066 bits (142), Expect = 5.555e-8
Identity = 29/100 (29.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   12 VQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVG 111
            +Q+ FD ++ +   ++AI++S  DG+ L   ++ T+P F       +L +I+S ++  F++A DQ  K+G     SI + Y+   ++Q N  PL+++F+ 
Sbjct:    3 IQKEFDSIISKTQGLQAIIVSDKDGVIL---IQSTNPAF-------TLDSIDSSLATSFAVACDQIGKIGLSKNKSITTFYKYHQIIQFNYHPLIITFIA 92          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|909553375|ref|XP_013148117.1| (PREDICTED: ragulator complex protein LAMTOR3 homolog [Papilio polytes] >gi|910351850|ref|XP_013179857.1| PREDICTED: ragulator complex protein LAMTOR3 homolog [Papilio xuthus] >gi|930657516|gb|KPI99820.1| Ragulator complex protein LAMTOR3-like [Papilio xuthus])

HSP 1 Score: 59.3066 bits (142), Expect = 6.110e-8
Identity = 33/100 (33.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   12 VQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVG 111
            +++  + LL +   +  IL++  DG+P++RAV   +P  P +   + +ST        F +A DQA KLG G   +I+S+Y    ++Q+N  PLV++F+G
Sbjct:    5 LRKYLNHLLEKVNGLHCILITDRDGVPVVRAVTERAP--PLALRPNFIST--------FGMATDQASKLGLGRNKTIISMYSSYQVIQMNKLPLVITFIG 94          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|512898599|ref|XP_004924436.1| (ragulator complex protein LAMTOR3 homolog [Bombyx mori])

HSP 1 Score: 58.5362 bits (140), Expect = 1.124e-7
Identity = 34/100 (34.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   12 VQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVG 111
            +++  + LL +   +  IL++  DG+PL+RAV   +P  P +   + +ST        F +A DQA KLG G   +I+S+Y    +VQ++  PLV++F+G
Sbjct:    5 LRKYLNHLLEKVNGLHCILITDRDGVPLVRAVTERAP--PLALRPNFIST--------FGMATDQASKLGLGRNKTIISMYSSYQVVQMSKLPLVITFIG 94          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|1199383055|ref|XP_021186131.1| (ragulator complex protein LAMTOR3 homolog [Helicoverpa armigera])

HSP 1 Score: 58.151 bits (139), Expect = 1.196e-7
Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   12 VQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVG 111
            +++  + LL +   +  IL++  DG+PL+RAV   +P             +     + F +A DQA KLG G   +I+S+Y    ++Q+N  PLV++F+G
Sbjct:    5 LRKYLNHLLEKVNGLHCILITDRDGVPLVRAVTERAPQL----------ALRPNFISTFGMATDQASKLGLGRNKTIISMYSSYQVIQMNKLPLVITFIG 94          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|675204867|ref|XP_008911318.1| (hypothetical protein PPTG_15761 [Phytophthora parasitica INRA-310] >gi|566015046|gb|ETI37957.1| hypothetical protein F443_16215 [Phytophthora parasitica P1569] >gi|567952469|gb|ETK78144.1| hypothetical protein L915_15776 [Phytophthora parasitica] >gi|567981133|gb|ETL31579.1| hypothetical protein L916_15667 [Phytophthora parasitica] >gi|568010637|gb|ETL84822.1| hypothetical protein L917_15478 [Phytophthora parasitica] >gi|568040525|gb|ETM37977.1| hypothetical protein L914_15623 [Phytophthora parasitica] >gi|568088688|gb|ETN03545.1| hypothetical protein PPTG_15761 [Phytophthora parasitica INRA-310] >gi|570318762|gb|ETO66710.1| hypothetical protein F444_16199 [Phytophthora parasitica P1976] >gi|570942587|gb|ETP07844.1| hypothetical protein F441_16044 [Phytophthora parasitica CJ01A1] >gi|570973175|gb|ETP35879.1| hypothetical protein F442_16067 [Phytophthora parasitica P10297])

HSP 1 Score: 58.5362 bits (140), Expect = 1.277e-7
Identity = 38/124 (30.65%), Postives = 66/124 (53.23%), Query Frame = 0
Query:   10 PVVQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLST--IESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVGYATIPSAATVLASTSEGKPG 131
            P++Q+  + +L R+  +EAIL+ T++G+PL++          S+   S LS    E+ +  VF+ A +Q  KL  G   S+ + +  + L+ IN APLV++ V   + P    + A  SE +P 
Sbjct:    9 PILQEKLNDVLSRYDALEAILVCTSEGVPLLKV---------SAEEKSELSYEYTETVLPTVFAGAAEQVGKLKFGAVQSVTAFFDDVVLIHINHAPLVITLVAPNS-PHVGALHALASELRPA 122          
BLAST of EWM22740.1 vs. NCBI_GenBank
Match: gi|1214690243|gb|OWZ05537.1| (Mitogen-activated protein kinase kinase 1 interacting protein, partial [Phytophthora megakarya])

HSP 1 Score: 58.151 bits (139), Expect = 1.738e-7
Identity = 38/124 (30.65%), Postives = 66/124 (53.23%), Query Frame = 0
Query:   10 PVVQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLST--IESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVGYATIPSAATVLASTSEGKPG 131
            P++Q+  + +L R+  +EAIL+ T++G+PL++          S+   S LS    E+ +  VF+ A +Q  KL  G   S+ + +  + L+ IN APLV++ V   + P    + A  SE +P 
Sbjct:    3 PILQEKLNDVLSRYDALEAILVCTSEGVPLLKV---------SAEEKSELSYEYTETVLPTVFAGAAEQVGKLKFGAVQSVTAFFDDVVLIHINHAPLVITLVAPNS-PHIGALHALASELRPA 116          
The following BLAST results are available for this feature:
BLAST of EWM22740.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103333|gb|EWM22740.1|2.465e-145100.00Mitogen-activated protein kinase kinase 1 interact... [more]
gi|923124784|ref|XP_013755860.1|2.550e-1236.29mitogen-activated protein kinase scaffold protein ... [more]
gi|1183356089|gb|ORX83733.1|6.108e-931.00mitogen-activated protein kinase [Anaeromyces robu... [more]
gi|1183399726|gb|ORY24427.1|7.359e-931.00Roadblock/LC7 domain-containing protein [Neocallim... [more]
gi|1183324007|gb|ORX53787.1|5.555e-829.00Roadblock/LC7 domain-containing protein [Piromyces... [more]
gi|909553375|ref|XP_013148117.1|6.110e-833.00PREDICTED: ragulator complex protein LAMTOR3 homol... [more]
gi|512898599|ref|XP_004924436.1|1.124e-734.00ragulator complex protein LAMTOR3 homolog [Bombyx ... [more]
gi|1199383055|ref|XP_021186131.1|1.196e-731.00ragulator complex protein LAMTOR3 homolog [Helicov... [more]
gi|675204867|ref|XP_008911318.1|1.277e-730.65hypothetical protein PPTG_15761 [Phytophthora para... [more]
gi|1214690243|gb|OWZ05537.1|1.738e-730.65Mitogen-activated protein kinase kinase 1 interact... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7962rna7962Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications