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Properties
| Property Name | Value |
|---|
| Product | TRAM, LAG1 and CLN8 lipid-sensing domain containing protein |
| Orig transcript id | gnl|cribi|Naga_100209g6.4963.mrna |
| Orig protein id | gnl|cribi|Naga_100209g6.4963 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:229123..232067 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7961 ID=rna7961|Name=rna7961|organism=Nannochloropsis gaditana|type=mRNA|length=1661bp
CCATGCTAGAGACTCTACGTGCACTTGAATCGGCTTCAGCATAATTGAAA
CAATTTCCTGACCCTGAAGTGGGCTGAAGCGGACACAAGTTGGGTGGATG
GATTCGTCATTCTCAGTTGATTTTTCTTCAGCGATGACATGATATCGTGT
ACAGCCACAAAGGACCAGGCACGTTTATGAGCTCTTCAAGCATACAACTT
CAATGAAAGAGTACGCTGGAGAATCTGAACTTATTTTGTCGCCAGGACAG
CCACTGGTCTTGGACGGAGGTCCCTGTCGACCGACCTGCCCCCCGCCCAT
GCCCACATTGACCAAAGATGTCGAGCTTGAAATCGACGAAGATGAAGATG
AATACCCTGTCCTTCCGGGACAGGTCTGGATGGAAGGGGACTCCCTTGCT
CCCCCTTGCCAATCGGATTTGGACATAGTTGATGATATTTGTGGCTTGGG
CTGCATAGACGCAGACGATGTTTTCTTCGATCTCGGTTGTGGGGATGGTC
GTATATGTATTGCAGTAGCACAGGTCACCGGGGCAAGGGCGAGAGGAGTC
GAAATCGAGGAGAGACTGGTCAAAAGATTCCGGACGCGCATAGCCCGCGC
TGAGAAGGCAAGGTCGGCAGTAGATTTCGCTGAAGACGCCGCATCTGGGC
CGCACAACAATGATGATACTCCGATGAAAATGGCAACAGGAAAAAAAGAA
GCTGTACAGCAAGCGAGCGAGTCATTTAAAGGTACAAGACGTGATGGTAT
ATCAGAGGGGACCCGAGGCGAGCGACTCCTTTTCGATCAATCGCAGCATG
TAGAGGGACAGGAGCGGCAGTTGAAGCAATTGCAGCATCATCTACACCCC
CAAAAGGTCCTAGAAGAAGGCCGGGTAAAGGTAATTTGGCAGGATTTGCT
GACAGTAGACCTTTTTCAAGCGTCGGTTATCTATTTGTACCTTCTTCCAG
AGGGCATCCAGGCATTGAGGTCTCAAATAGAGGCTTGGTTGGACGGGCAT
GGAGAAGGGGTAGATGGAAATGCGTGTTGTACAGAAACTCTTAAAAAAAA
ACGTAACGTGTGCATTACTCGGGGCCACGACAATGAGTATGCCCGGGGCA
AGAATGAAGTCTCCTCTAAGGATGAAGGTGAAGATCAGACTGTGATCGCT
GTCGTAAGCAATGACTGGAGCGCTGAGGGTACGACTTGCGAGGATGACAA
CGCGGAGATGTTGTGTGCCCCTAAGAAGCGACGAAGACGCCGACGATTGA
TCTGCAATACCTGGGGTCTCCCCGGACGTGCGCCAGCTGCGGTCAGAGAT
GTGGGGGCTATGGCGAACGTTAGACTCTTGTTGTATGAGTCTCCACTTCA
AAGCGAGGAATGAGGCGCTAAGTGGGACAATCTTGATGTGTTACGATCGA
GACCACCAGAGCAAGTCGGTTACAGAGTACTGTCTGTCTATGAAAGTATG
TAAATATTCTAAAACCAAAACCAGTTGATAGTAAAAGAAAAGCAGATGTC
GAGGCAGTCACCATGTCGAAAGGTCGGCAATCGCTTGAGTGATAGTAAGA
CATTGCACGCACGTTTAAAATGACAGTTTTGACGCTAATGTTTGAAACGG
GCTTGATGTAGAGAACTCACATTGAAACGCTTAAAGAAAAAATCATCACC
CGAAGCAACTT back to topprotein sequence of rna7961 >rna7961-protein ID=rna7961-protein|Name=rna7961|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MINTGCYSSLLFHSASNLPVHHLSLRPRLLPPPYPRPPPAGGPGLYFFAV
FSGRVCIASFHFHFAFPFFPPKTPNSFAFEPLYDIIIHSMSDIGPVQRGQ
SAFPPHHTPNLVSSLPMPSGFGPRYILSIMFIATELSTPFVNVRWHLLHV
TPPQGSLSVSTTRPMHSKRCLPDVHSKSDVNKPDQAGLLSTLKLVNDVVL
VVVFAISRVCALPFQLRMVVKHAGPLGRASASWVMVQCVLSFVVIACLNL
WWFGRMLRLLGRQGKMNSKDAE back to topmRNA from alignment at KK037247.1:229123..232067+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7961 ID=rna7961|Name=rna7961|organism=Nannochloropsis gaditana|type=mRNA|length=2945bp|location=Sequence derived from alignment at KK037247.1:229123..232067+ (Nannochloropsis gaditana)
TCAAATAACTTCAACTGATAGCACTTCAGCCATTTTCTTCAAATCGACCC
ACGTCCTAATGTTTTCACTCCAACACAACACATCTATGAAGGGATGATCA
ATAGTTCATCCTCTGGGACCTGATAATGGCCTTACCTGCGATGTTCAGAG
GACTTCTTTTCGACACTTCTTTTGATGGGACCTATTGCGAGCCTTACACG
ATAGTCATCTGGAGCAGCTACATCTTGACTTTGCTAATACAATTTCTCAG
CCACCTTGCATGCAGCACTCTTTTCCCTGTTACGTATTCTAACCTGCCTC
CGCCCAAGCGCGACGAATGGAACACACGTATCTGTTCCACAATCCATGCG
CTTATTTCGAGTGCCTTTTCTTTACGTGTGATGTGTACTGAGGGACCTTC
TTTGTACGACAACGTGCGCCATAAGTCCTACCTTGCACCGATTTGCATCG
CAATTACTACAGGCTATCTCTTGGGGGTAAGTTCGAAATGCGTACAATTT
CCGGGGGAGAACTAGCTGAAACAATCAGACTTTCGGTCTGCACCACCGTT
GGATGATAAATACAGGATGCTACTCTAGTCTTCTATTCCACTCTGCCTCG
AACCTTCCAGTCCACCATCTTTCCCTACggccccgtctcctcccccctcc
ctaccctcgcccaccacctgCTGGGGGCCCTGGCCTTTATTTCTTCGCTG
TATTTTCAGGCAGGGTATGCATTGCTTCCTTTCATTTTCACtttgctttt
ccttttttccctccaaaAACGCCTAACTCTTTTGCCTTCGAGCCTTTGTA
TGACATCATCATCCATTCAATGTCTGACATTGGCCCTGTGCAAAGAGGGC
AAAGCGCCTTTCCACCTCACCACACCCCAAatctcgtttcctcccttccc
atgccATCTGGCTTCGGCCCAAGGTATATCCTGTCCATCATGTTCATCGC
CACCGAACTCTCTACACCGTTTGTGAACGTACGCTGGCACCTCCTGCATG
TGACACCACCACAGGGCTCGCTGTCGGTCTCCACGACCAGGCCAATGCAT
TCAAAAAGATGCTTGCCTGACGTACACTCAAAGAGCGATGTCAACAAGCC
AGACCAAGCGGGATTACTGTCCACCCTGAAACTTGTGAACGACGTTGTAT
TGGTAGTAGTTTTCGCAATTTCTCGGGTCTGTGcactccccttccagctG
CGGATGGTCGTGAAGCACGCGGGGCCACTGGGAAGAGCAAGTGCTAGCTG
GGTCATGGTGCAGTGCGTCTTGAGTTTTGTGGTCATTGCCTGTCTCAACC
TGTGGTGGTTCGGGAGAATGCTTCGGTTACTGGGCAGACAAGGAAAGATG
AATAGTAAGGACGCAGAGTAGGCgttgaaggaaaagggattGGGggaccc
tccttttcctcccctaccctgCTCTCAGTGCTGTGCTTGTGTGAATGTAT
AACTTATAGCACCTGAATTGATCGAACCACACAACCATCATCGTGCTTTG
GGGCTGATAAGGGCTATTCCGTCGCATGAACCCTGTCTTTCCGAAACACC
AGTGATGACCTTAAGCCAGCGTCCATGACACCATGAttgaggatgggaaa
gaaatGCGAAGCGCACTTGCATGAAAAGTCGCATTTATTCATTTTACCGC
TCCATTTCATTCCCCTTTATTTATTTCGATGATTTCCGCCCTATATCTAC
AGACTTCTTCCGCTGGTtgtgctttccctctctgaCGCCTCTACTACTCC
CCTCAACGGTGCCAGCGCCTCGCGAAACTCAGCCTGCGAGTCCAAAATCA
TTCCAACGTTCATAAGttgcagaggaaggggaggcacaagcccggcctcc
ctcccaccttcccccccgagtGGAACCGCCACGCTTGAATCATGGCCTTC
CTCATGGTGTCGTTGCTCTTCCTGACCGGGCTTGCCTTCAGAGGTGGAAG
CCAGGACTGTCGCCGCTGAAGGAATTGTAGCGTAGccgacgaaggagagg
acgagaggggccAGATTTATTTGCACAAGGGTCAGGCCCTGGTAGAGCGA
GACAATGGAATTGCACGTCCCGTTTCCGAGCTTCCGCGCCTGGTCGACAG
CGATGCTGAAGACGGCGGAGACTTTGCTTTCAATtgtagagagggaggag
gacgccgtcgaggagggaaagcagggagaggtCGGCCGTACAGCTGTAGG
ATTGAATGGACCACGGTATTAGCCCCTGGCGAGGCTTCGTATGTGAAGCT
AGGCATCCAAACATAAGATTGAGCTATTCCAACGTTGGAAGGAGAATTTG
CGGCAACTCTATTCGTCAACAATCGAcaaccctcctttccctatAAACAT
AAAGACGATGCGACATAGTCCTACCACGCATGAGAGGAATACCGTCAGCA
GTGCTTAAGAGGATGGCTTCCACATCTGGATGTCGAAGGAGAAGTTGATC
GAAGGCTTGTTGAACCACAGGGTCCTGGCAGAAATCGCGTGAGAAGTGGA
AAATCATGAGTTGGAGACCATAAAAGGAACATAACACACCTAAGgcttct
cccccctgccGCTAAAGCAAGTCAGAAATTGGAAAAAATAGGTTTGATGA
TCGGTCTTCAGAGGAGAAGCCTTATTGCTACGTGAAGTTAAGAATGTTCT
CGCGATCTTctcctcatctcccctcctcgcatctccctttctctcccctt
tcttctcctctctctccaccgccctttccttttctttcttgtcgTCAGAC
ATGAATGATAACATGGAGCTACTTTGCCTCGCAGCCGAGATGAGGAAGCA
GAGCATGAAGTAAAGTGACTTACCACGGAGGTTAATTCTTTCCGCATGAA
TGGCACTAACAACACAATTGAGCCCAAGACGTCTAGGCGTCCGTCTGTAA
GCGATATAAACAGCAGAAGATGAGGTAGGGGACATAAAATGTCAT back to topCoding sequence (CDS) from alignment at KK037247.1:229123..232067+ >rna7961 ID=rna7961|Name=rna7961|organism=Nannochloropsis gaditana|type=CDS|length=819bp|location=Sequence derived from alignment at KK037247.1:229123..232067+ (Nannochloropsis gaditana)
ATGATAAATACAGGATGCTACTCTAGTCTTCTATTCCACTCTGCCTCGAA
CCTTCCAGTCCACCATCTTTCCCTACggccccgtctcctcccccctccct
accctcgcccaccacctgCTGGGGGCCCTGGCCTTTATTTCTTCGCTGTA
TTTTCAGGCAGGGTATGCATTGCTTCCTTTCATTTTCACtttgcttttcc
ttttttccctccaaaAACGCCTAACTCTTTTGCCTTCGAGCCTTTGTATG
ACATCATCATCCATTCAATGTCTGACATTGGCCCTGTGCAAAGAGGGCAA
AGCGCCTTTCCACCTCACCACACCCCAAatctcgtttcctcccttcccat
gccATCTGGCTTCGGCCCAAGGTATATCCTGTCCATCATGTTCATCGCCA
CCGAACTCTCTACACCGTTTGTGAACGTACGCTGGCACCTCCTGCATGTG
ACACCACCACAGGGCTCGCTGTCGGTCTCCACGACCAGGCCAATGCATTC
AAAAAGATGCTTGCCTGACGTACACTCAAAGAGCGATGTCAACAAGCCAG
ACCAAGCGGGATTACTGTCCACCCTGAAACTTGTGAACGACGTTGTATTG
GTAGTAGTTTTCGCAATTTCTCGGGTCTGTGcactccccttccagctGCG
GATGGTCGTGAAGCACGCGGGGCCACTGGGAAGAGCAAGTGCTAGCTGGG
TCATGGTGCAGTGCGTCTTGAGTTTTGTGGTCATTGCCTGTCTCAACCTG
TGGTGGTTCGGGAGAATGCTTCGGTTACTGGGCAGACAAGGAAAGATGAA
TAGTAAGGACGCAGAGTAG back to top
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