EWM22737.1, cds7939 (CDS) Nannochloropsis gaditana

Overview
NameEWM22737.1
Unique Namecds7939
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:229675..230493 +

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Properties
Property NameValue
Protein idEWM22737.1
ProductTRAM, LAG1 and CLN8 lipid-sensing domain containing protein
Orig transcript idgnl|cribi|Naga_100209g6.4963.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:229675..230493 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Homology
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BLAST of EWM22737.1 vs. NCBI_GenBank
Match: gi|585103330|gb|EWM22737.1| (TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0 
Query:    1 MINTGCYSSLLFHSASNLPVHHLSLRPRLLPPPYPRPPPAGGPGLYFFAVFSGRVCIASFHFHFAFPFFPPKTPNSFAFEPLYDIIIHSMSDIGPVQRGQSAFPPHHTPNLVSSLPMPSGFGPRYILSIMFIATELSTPFVNVRWHLLHVTPPQGSLSVSTTRPMHSKRCLPDVHSKSDVNKPDQAGLLSTLKLVNDVVLVVVFAISRVCALPFQLRMVVKHAGPLGRASASWVMVQCVLSFVVIACLNLWWFGRMLRLLGRQGKMNSKDAE 272
            MINTGCYSSLLFHSASNLPVHHLSLRPRLLPPPYPRPPPAGGPGLYFFAVFSGRVCIASFHFHFAFPFFPPKTPNSFAFEPLYDIIIHSMSDIGPVQRGQSAFPPHHTPNLVSSLPMPSGFGPRYILSIMFIATELSTPFVNVRWHLLHVTPPQGSLSVSTTRPMHSKRCLPDVHSKSDVNKPDQAGLLSTLKLVNDVVLVVVFAISRVCALPFQLRMVVKHAGPLGRASASWVMVQCVLSFVVIACLNLWWFGRMLRLLGRQGKMNSKDAE
Sbjct:    1 MINTGCYSSLLFHSASNLPVHHLSLRPRLLPPPYPRPPPAGGPGLYFFAVFSGRVCIASFHFHFAFPFFPPKTPNSFAFEPLYDIIIHSMSDIGPVQRGQSAFPPHHTPNLVSSLPMPSGFGPRYILSIMFIATELSTPFVNVRWHLLHVTPPQGSLSVSTTRPMHSKRCLPDVHSKSDVNKPDQAGLLSTLKLVNDVVLVVVFAISRVCALPFQLRMVVKHAGPLGRASASWVMVQCVLSFVVIACLNLWWFGRMLRLLGRQGKMNSKDAE 272
The following BLAST results are available for this feature:
BLAST of EWM22737.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103330|gb|EWM22737.1|0.000e+0100.00TRAM, LAG1 and CLN8 lipid-sensing domain containin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7961rna7961Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications