rna7956, rna7956 (mRNA) Nannochloropsis gaditana

Overview
Namerna7956
Unique Namerna7956
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length393
Alignment locationKK037247.1:216157..217920 +

Link to JBrowse

Properties
Property NameValue
Productglutaredoxin-like protein
Orig transcript idgnl|cribi|Naga_100209g2.4964.mrna
Orig protein idgnl|cribi|Naga_100209g2.4964
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:216157..217920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100209g2gene7706Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7956rna7956-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22738.1cds7934Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7956 ID=rna7956|Name=rna7956|organism=Nannochloropsis gaditana|type=mRNA|length=393bp
ATGACAGCAGGACTGCTTTTTCGTGTTTCGTACCCCACTGCGGTCCAACC
TCCCCTGAGCAACACACATGACTCCCACATCTACCTCCACCCTTTTCCTC
CTCCTCCTCCTCCTACCCTTTGCCCACCACGGGGGCCCTCCATGGCTTTC
ATAGCTGTCCCCTCGACCGCAGGTGCGGCCACAGAAGATATCTGGCCGCA
GGGACCTCGGGAGGGGGGGGGAAGGCCAAAACGCCTCCGTCGAAGAAGGA
AGAAAAGGGAAAAGAGGAGCCTACCTGGGGGCGTGTGCAAGTCTTGGAGA
CGAAGCCAGCGGCGGAAGGCCTGTATCACGTGTCGATCGATGCCGGGGAC
CTCCTTGCGTCGTACTCCACTCCGGGACAGTACGTGCAATTGA
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protein sequence of rna7956

>rna7956-protein ID=rna7956-protein|Name=rna7956|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MTMPWLPRAASGASLLRSNSSSRTASLFALLVLGPLATTLSHAFLIFHAR
PGPSSIARLPASALGLSTPFCLPSSLRAVPEGLLNDDGEPQYDAPARAKI
EELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERI
RGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS
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mRNA from alignment at KK037247.1:216157..217920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7956 ID=rna7956|Name=rna7956|organism=Nannochloropsis gaditana|type=mRNA|length=1764bp|location=Sequence derived from alignment at KK037247.1:216157..217920+ (Nannochloropsis gaditana)
GCTTTGCGTTCACTTTAGCCTACTCATTCTCGatctcgacctcctcctct
cactTGTTTAGTACGTCAAGCAACGGGGGGCTGGTTTGCGGACTGGTCGC
CTCTACATTGATATCCGCCAGCAGGGAGGATCAGCGCATTACATGACTAT
GCCTTGGTTACCACGCGCGGCATCAGGCGCCTCTCTGCTTcgctccaact
cctcctctcgcacaGCATCCCTTTTCGCCTTGCTCGTCCTTGGCCCGCTT
GCGACGACCTTGTCGCATGCCTTTTTAATTTTCCACGcacggccagggcc
ttcCTCTATAGCACGCTTGCCTGCTTCCGCCCTTGGCCTTTCTACACCTT
TttgtctcccttcctcccttcgggCCGTGCCAGAGGGTCTCCTTAACGAT
GATGGAGAGCCCCAGTACGACGCTCCAGCCCGCGCCAAAATCGAAGAATT
GATAAAAAACAACAAAATCGTGCTTTTTATGAAAGGAACCCGATTGTTTC
CTTCGTGCGGATTCAGCAACACGGCCATCCGGATCTTGGATCAGTTGAAT
GTAGGGTCaacagggggagaggggtggcGCGAATGCACATGGGAAAGCAC
GACGAAGGATACCAGGGCCGTTTGGGATGCTTTTTTTCCAAATCCTTTAT
CTTGGGGAATGGGAGATATTTGTCTGGACTGATCTTCCATTTCACCCATG
CTGTGCTCTTCTTGGCAGGTGGAGTACGAGACCGTCGACGTTTTGGCCGA
TGAACGCATTCGAGGGGAGATCAAAAGGTGCTTTTTGGTTCTCGAGTTAT
TGTGCCTCTACTAACGatatttttttatttttttttgctttAGCCTCGCA
TTGCTTGCCTGTCACTCGACACGTGGCGAGTGGGGAagacctctttttcc
tcttccctcaccccCATTTGAACATGCTTCCGCAGGTACAGCGCGTGGCC
TACCATCCCTCAGCTCTACTTACAAGGAGACTTCATTGGTACGTTGCTGT
CACCAGTGGTTCTCAATCTATCGTGTGCGAGCGAAAGAGCAGTTCCTGTC
TTCCAGATGCATGGTCacattttctccttctcgtcctccaaatTGTAGGC
GGATCCGATATCATACTGGAAATGTATCAGACTGGGGAGCTGCAAGAAAT
GATTGAGATCGCTGCTGCCTCGTAAAAGATATGTTCGTGGCCAAGGACGG
TGGAGATATCGGCCTCCGGAGTCTGAGCTCGTCTCGGGGATAGCGACGCC
TTCCATTGCATCGCTTGGCTCGTCATGATACACAATACATCGGTTTTGAG
TTTTTGTATCAGAACTGAATTAAAGAATCGACCTTTGCATTTTCTACCAT
TTCTTTAGTAGCACTATACATTGATTAAAGCTCACGGTGCGGTGAAAGAA
GGTAGAACATGCAATTTATCAGTACTTTTCCCCCATTTTTATGCTTTTGG
ATTATATTTTTCGGTCAAGGAGAAGGTTGTTTGTTGTGAGACCCATTTGA
TACAGGTCGGAGCAGACACAACCACTTCCACTACTATATAATGTCATAGC
AAACTAGATGCTTGTCTGCGCTAGAGTGAAAGAGAAACATCAGATGGATA
GTCTTTGCCTCACACTTGACGCGCTCTTACCGGTCACCAAATCCGCCACG
GGAAGTCTTTCCGCGCTCATTACACAAcaattttttatttttcaaaGATC
AAGCTGGCACGTGTCAAATACACACTTCTTGTATCGTAGTTGAAGCGGGA
TGTACCACATGTTC
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Coding sequence (CDS) from alignment at KK037247.1:216157..217920+

>rna7956 ID=rna7956|Name=rna7956|organism=Nannochloropsis gaditana|type=CDS|length=2388bp|location=Sequence derived from alignment at KK037247.1:216157..217920+ (Nannochloropsis gaditana)
ATGACTATGCCTTGGTTACCACGCGCGGCATCAGGCGCCTCTCTGCTTcg
ctccaactcctcctctcgcacaGCATCCCTTTTCGCCTTGCTCGTCCTTG
GCCCGCTTGCGACGACCTTGTCGCATGCCTTTTTAATTTTCCACGcacgg
ccagggccttcCTCTATAGCACGCTTGCCTGCTTCCGCCCTTGGCCTTTC
TACACCTTTttgtctcccttcctcccttcgggCCGTGCCAGAGGGTCTCC
TTAACGATGATGGAGAGCCCCAGTACGACGCTCCAGCCCGCGCCAAAATC
GAAGAATTGATAAAAAACAACAAAATCGTGCTTTTTATGAAAGGAACCCG
ATTGTTTCCTTCGTGCGGATTCAGCAACACGGCCATCCGGATCTTGGATC
AGTTGAATGTGGAGTACGAGACCGTCGACGTTTTGGCCGATGAACGCATT
CGAGGGGAGATCAAAAGGTACAGCGCGTGGCCTACCATCCCTCAGCTCTA
CTTACAAGGAGACTTCATTGGCGGATCCGATATCATACTGGAAATGTATC
AGACTGGGGAGCTGCAAGAAATGATTGAGATCGCTGCTGCCTCGTAAATG
ACTATGCCTTGGTTACCACGCGCGGCATCAGGCGCCTCTCTGCTTcgctc
caactcctcctctcgcacaGCATCCCTTTTCGCCTTGCTCGTCCTTGGCC
CGCTTGCGACGACCTTGTCGCATGCCTTTTTAATTTTCCACGcacggcca
gggccttcCTCTATAGCACGCTTGCCTGCTTCCGCCCTTGGCCTTTCTAC
ACCTTTttgtctcccttcctcccttcgggCCGTGCCAGAGGGTCTCCTTA
ACGATGATGGAGAGCCCCAGTACGACGCTCCAGCCCGCGCCAAAATCGAA
GAATTGATAAAAAACAACAAAATCGTGCTTTTTATGAAAGGAACCCGATT
GTTTCCTTCGTGCGGATTCAGCAACACGGCCATCCGGATCTTGGATCAGT
TGAATGTGGAGTACGAGACCGTCGACGTTTTGGCCGATGAACGCATTCGA
GGGGAGATCAAAAGGTACAGCGCGTGGCCTACCATCCCTCAGCTCTACTT
ACAAGGAGACTTCATTGGCGGATCCGATATCATACTGGAAATGTATCAGA
CTGGGGAGCTGCAAGAAATGATTGAGATCGCTGCTGCCTCGTAAATGACT
ATGCCTTGGTTACCACGCGCGGCATCAGGCGCCTCTCTGCTTcgctccaa
ctcctcctctcgcacaGCATCCCTTTTCGCCTTGCTCGTCCTTGGCCCGC
TTGCGACGACCTTGTCGCATGCCTTTTTAATTTTCCACGcacggccaggg
ccttcCTCTATAGCACGCTTGCCTGCTTCCGCCCTTGGCCTTTCTACACC
TTTttgtctcccttcctcccttcgggCCGTGCCAGAGGGTCTCCTTAACG
ATGATGGAGAGCCCCAGTACGACGCTCCAGCCCGCGCCAAAATCGAAGAA
TTGATAAAAAACAACAAAATCGTGCTTTTTATGAAAGGAACCCGATTGTT
TCCTTCGTGCGGATTCAGCAACACGGCCATCCGGATCTTGGATCAGTTGA
ATGTGGAGTACGAGACCGTCGACGTTTTGGCCGATGAACGCATTCGAGGG
GAGATCAAAAGGTACAGCGCGTGGCCTACCATCCCTCAGCTCTACTTACA
AGGAGACTTCATTGGCGGATCCGATATCATACTGGAAATGTATCAGACTG
GGGAGCTGCAAGAAATGATTGAGATCGCTGCTGCCTCGTAAATGACTATG
CCTTGGTTACCACGCGCGGCATCAGGCGCCTCTCTGCTTcgctccaactc
ctcctctcgcacaGCATCCCTTTTCGCCTTGCTCGTCCTTGGCCCGCTTG
CGACGACCTTGTCGCATGCCTTTTTAATTTTCCACGcacggccagggcct
tcCTCTATAGCACGCTTGCCTGCTTCCGCCCTTGGCCTTTCTACACCTTT
ttgtctcccttcctcccttcgggCCGTGCCAGAGGGTCTCCTTAACGATG
ATGGAGAGCCCCAGTACGACGCTCCAGCCCGCGCCAAAATCGAAGAATTG
ATAAAAAACAACAAAATCGTGCTTTTTATGAAAGGAACCCGATTGTTTCC
TTCGTGCGGATTCAGCAACACGGCCATCCGGATCTTGGATCAGTTGAATG
TGGAGTACGAGACCGTCGACGTTTTGGCCGATGAACGCATTCGAGGGGAG
ATCAAAAGGTACAGCGCGTGGCCTACCATCCCTCAGCTCTACTTACAAGG
AGACTTCATTGGCGGATCCGATATCATACTGGAAATGTATCAGACTGGGG
AGCTGCAAGAAATGATTGAGATCGCTGCTGCCTCGTAA
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Synonyms
Publications