EWM22738.1, cds7934 (CDS) Nannochloropsis gaditana

Overview
NameEWM22738.1
Unique Namecds7934
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:216299..216706 +
Alignment locationKK037247.1:216875..216933 +
Alignment locationKK037247.1:217092..217144 +
Alignment locationKK037247.1:217255..217331 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22738.1
Productglutaredoxin-like protein
Orig transcript idgnl|cribi|Naga_100209g2.4964.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:216299..216706 +
KK037247.1supercontigKK037247.1:216875..216933 +
KK037247.1supercontigKK037247.1:217092..217144 +
KK037247.1supercontigKK037247.1:217255..217331 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR004480Monothiol_GRX-rel
IPR002109Glutaredoxin
Homology
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|585103331|gb|EWM22738.1| (glutaredoxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 402.519 bits (1033), Expect = 5.116e-142
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MTMPWLPRAASGASLLRSNSSSRTASLFALLVLGPLATTLSHAFLIFHARPGPSSIARLPASALGLSTPFCLPSSLRAVPEGLLNDDGEPQYDAPARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
            MTMPWLPRAASGASLLRSNSSSRTASLFALLVLGPLATTLSHAFLIFHARPGPSSIARLPASALGLSTPFCLPSSLRAVPEGLLNDDGEPQYDAPARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS
Sbjct:    1 MTMPWLPRAASGASLLRSNSSSRTASLFALLVLGPLATTLSHAFLIFHARPGPSSIARLPASALGLSTPFCLPSSLRAVPEGLLNDDGEPQYDAPARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|553190307|ref|XP_005855164.1| (grx5, partial [Nannochloropsis gaditana CCMP526] >gi|422293896|gb|EKU21196.1| grx5, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 276.174 bits (705), Expect = 7.694e-93
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query:    1 MTMPWLPRAASGASLLRSNSSSRTASLFALLVLGPLATTLSHAFLIFHARPGPSSIARLPASALGLSTPFCLPSSLRAVPEGLLNDDGEPQYDAPARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNV 137
            MTMPWLPRAASGASLLRSNSSSRTASLFALLVLGPLATTLSHAFLIFHARPGPSSIARLPASALGLSTPFCLPSSLRAVPEGLLNDDGEPQYDAPARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNV
Sbjct:    1 MTMPWLPRAASGASLLRSNSSSRTASLFALLVLGPLATTLSHAFLIFHARPGPSSIARLPASALGLSTPFCLPSSLRAVPEGLLNDDGEPQYDAPARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNV 137          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|493683898|ref|WP_006634036.1| (glutaredoxin [Microcoleus vaginatus] >gi|333457799|gb|EGK86420.1| glutaredoxin-like protein [Microcoleus vaginatus FGP-2])

HSP 1 Score: 153.68 bits (387), Expect = 6.991e-45
Identity = 66/103 (64.08%), Postives = 85/103 (82.52%), Query Frame = 0
Query:   96 ARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
            A  +I+EL+K NKI++FMKG +L P CGFSNT ++IL+ L V YETVDVLAD+ IR  +K YS WPTIPQ+Y+ G+FIGGSDI++EMYQ GELQE++E+A AS
Sbjct:    5 AHQRIDELVKQNKIMVFMKGNKLMPQCGFSNTVVQILNTLGVPYETVDVLADQEIRQGVKEYSQWPTIPQVYINGEFIGGSDIMIEMYQKGELQEVVEVALAS 107          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|494518145|ref|WP_007307601.1| (glutaredoxin [Crocosphaera watsonii] >gi|67853264|gb|EAM48630.1| Glutaredoxin-related protein [Crocosphaera watsonii WH 8501] >gi|357261111|gb|EHJ10418.1| Uncharacterized monothiol glutaredoxin ycf64-like protein [Crocosphaera watsonii WH 0003] >gi|543518408|emb|CCQ49189.1| Uncharacterized monothiol glutaredoxin ycf64-like [Crocosphaera watsonii WH 8502] >gi|543523934|emb|CCQ57427.1| Uncharacterized monothiol glutaredoxin ycf64-like [Crocosphaera watsonii WH 0005])

HSP 1 Score: 151.369 bits (381), Expect = 4.983e-44
Identity = 64/102 (62.75%), Postives = 84/102 (82.35%), Query Frame = 0
Query:   97 RAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
            + +I++L+ NNKI++FMKG +L P CGFSN  +++L+ L V YETVDVLADE IR  IK YS+WPTIPQ+Y+ G+FIGG+DI+ EMYQ GELQ+MIE+A AS
Sbjct:    6 KDRIDQLVNNNKILVFMKGAKLMPQCGFSNNVVQVLNSLGVSYETVDVLADEEIRQGIKEYSSWPTIPQVYINGEFIGGADIVYEMYQKGELQQMIEVALAS 107          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|504991780|ref|WP_015178882.1| (monothiol glutaredoxin, Grx4 family [Oscillatoria nigro-viridis] >gi|428243889|gb|AFZ09675.1| glutaredoxin-like protein [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 149.828 bits (377), Expect = 1.747e-43
Identity = 64/103 (62.14%), Postives = 85/103 (82.52%), Query Frame = 0
Query:   96 ARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
            A  +I+EL+K NKI++FMKG +L P CGFSNT ++IL+ L V Y+T+DVLAD+ IR  +K YS WPTIPQ+Y+ G+FIGGSDI++EMYQ GELQE++E+A AS
Sbjct:    5 AHQRIDELVKQNKIMVFMKGNKLMPQCGFSNTVVQILNTLGVPYKTLDVLADQEIRQGVKEYSNWPTIPQVYINGEFIGGSDIMIEMYQKGELQEIVEVALAS 107          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|546231656|ref|WP_021835059.1| (glutaredoxin [Crocosphaera watsonii] >gi|543431223|emb|CCQ60978.1| Uncharacterized monothiol glutaredoxin ycf64-like [Crocosphaera watsonii WH 0401])

HSP 1 Score: 149.828 bits (377), Expect = 2.295e-43
Identity = 63/102 (61.76%), Postives = 84/102 (82.35%), Query Frame = 0
Query:   97 RAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
            + +I++L+ NNKI++FMKG +L P CGFSN  +++L+ L V YETVDVLA+E IR  IK YS+WPTIPQ+Y+ G+FIGG+DI+ EMYQ GELQ+MIE+A AS
Sbjct:    6 KDRIDQLVNNNKILVFMKGAKLMPQCGFSNNVVQVLNSLGVSYETVDVLANEEIRQGIKEYSSWPTIPQVYINGEFIGGADIVYEMYQKGELQQMIEVALAS 107          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|1121220295|ref|WP_073547735.1| (monothiol glutaredoxin, Grx4 family [Chroogloeocystis siderophila] >gi|1115265608|gb|OKH29255.1| monothiol glutaredoxin, Grx4 family [Chroogloeocystis siderophila 5.2 s.c.1])

HSP 1 Score: 149.058 bits (375), Expect = 3.708e-43
Identity = 65/103 (63.11%), Postives = 85/103 (82.52%), Query Frame = 0
Query:   96 ARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
             +A+I++LIK NKI++FMKGT+L P CGFSN  ++IL+ L V +ETVDVLAD  IR  IK YS WPTIPQ+Y+ G+F+GGSDI++EMYQ GELQ+M+E+A AS
Sbjct:    5 VQARIDDLIKQNKIMVFMKGTKLMPQCGFSNNVVQILNVLGVPFETVDVLADPEIRQGIKEYSNWPTIPQVYINGEFVGGSDILIEMYQKGELQQMVEVALAS 107          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|676378199|ref|XP_009032378.1| (hypothetical protein AURANDRAFT_18629 [Aureococcus anophagefferens] >gi|323456862|gb|EGB12728.1| hypothetical protein AURANDRAFT_18629 [Aureococcus anophagefferens])

HSP 1 Score: 150.214 bits (378), Expect = 5.227e-43
Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 0
Query:   86 DDGEPQYDAPARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
            DD EP  DA  + +I+ ++ +N ++LFMKGT++FP CGFSN A++IL+ +  ++ET D L+DE +R  IK +S WPTIPQLY+ G+F+GGSDI+LEMY+ GELQEMIE+AAAS
Sbjct:   35 DDVEPPPDATTK-RIQSMVDDNTVMLFMKGTKIFPQCGFSNMAVQILNAIGQDFETYDCLSDENVRSTIKEFSDWPTIPQLYVDGEFVGGSDIMLEMYEAGELQEMIEVAAAS 146          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|505007362|ref|WP_015194464.1| (monothiol glutaredoxin, Grx4 family [Stanieria cyanosphaera] >gi|428270861|gb|AFZ36802.1| glutaredoxin-like protein [Stanieria cyanosphaera PCC 7437])

HSP 1 Score: 148.288 bits (373), Expect = 8.221e-43
Identity = 63/103 (61.17%), Postives = 85/103 (82.52%), Query Frame = 0
Query:   96 ARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
             + +I++LI NNKI++FMKG++L P CGFSN  ++IL+ L V YETVDVLAD  IR  IK YS WPTIPQ+Y+ G+F+GGSDI++E+YQ+GELQ+M+E+A AS
Sbjct:    5 VKDRIDQLINNNKILVFMKGSKLMPQCGFSNNVVQILNTLGVPYETVDVLADLEIRQGIKEYSNWPTIPQVYINGEFVGGSDIMIELYQSGELQQMVEVALAS 107          
BLAST of EWM22738.1 vs. NCBI_GenBank
Match: gi|505002504|ref|WP_015189606.1| (monothiol glutaredoxin, Grx4 family [Gloeocapsa sp. PCC 7428] >gi|428265791|gb|AFZ31737.1| glutaredoxin-like protein [Gloeocapsa sp. PCC 7428])

HSP 1 Score: 148.288 bits (373), Expect = 8.682e-43
Identity = 64/103 (62.14%), Postives = 85/103 (82.52%), Query Frame = 0
Query:   96 ARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
             +A+I++LIK NKI++FMKGT+L P CGFSN  ++IL+ L V +ETVDVLAD  IR  IK YS WPTIPQ+Y+ G+F+GGSDI++EMYQ GELQ+++E+A AS
Sbjct:    5 VQARIDDLIKQNKIMVFMKGTKLMPQCGFSNNVVQILNVLGVPFETVDVLADSEIRQGIKEYSNWPTIPQVYINGEFVGGSDILIEMYQKGELQQVVEVALAS 107          
The following BLAST results are available for this feature:
BLAST of EWM22738.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103331|gb|EWM22738.1|5.116e-142100.00glutaredoxin-like protein [Nannochloropsis gaditan... [more]
gi|553190307|ref|XP_005855164.1|7.694e-93100.00grx5, partial [Nannochloropsis gaditana CCMP526] >... [more]
gi|493683898|ref|WP_006634036.1|6.991e-4564.08glutaredoxin [Microcoleus vaginatus] >gi|333457799... [more]
gi|494518145|ref|WP_007307601.1|4.983e-4462.75glutaredoxin [Crocosphaera watsonii] >gi|67853264|... [more]
gi|504991780|ref|WP_015178882.1|1.747e-4362.14monothiol glutaredoxin, Grx4 family [Oscillatoria ... [more]
gi|546231656|ref|WP_021835059.1|2.295e-4361.76glutaredoxin [Crocosphaera watsonii] >gi|543431223... [more]
gi|1121220295|ref|WP_073547735.1|3.708e-4363.11monothiol glutaredoxin, Grx4 family [Chroogloeocys... [more]
gi|676378199|ref|XP_009032378.1|5.227e-4357.52hypothetical protein AURANDRAFT_18629 [Aureococcus... [more]
gi|505007362|ref|WP_015194464.1|8.221e-4361.17monothiol glutaredoxin, Grx4 family [Stanieria cya... [more]
gi|505002504|ref|WP_015189606.1|8.682e-4362.14monothiol glutaredoxin, Grx4 family [Gloeocapsa sp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7956rna7956Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications