rna7943, rna7943 (mRNA) Nannochloropsis gaditana

Overview
Namerna7943
Unique Namerna7943
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length913
Alignment locationKK037247.1:171355..173180 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100143g3.3777.mrna
Orig protein idgnl|cribi|Naga_100143g3.3777
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:171355..173180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100143g3gene7692Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7943rna7943-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22748.1cds7921Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7943 ID=rna7943|Name=rna7943|organism=Nannochloropsis gaditana|type=mRNA|length=913bp
CCGCGCAGCCATGCAGAAGATAATTTTGTCAACGCCATTTTTTGGCACGG
GAAACAGAGGCGTTTCGACCCCTCGCTTGGCGACGCTCGAGAGAGCGCCC
GCCCCAAATCCCCCCCGTGGCCTCTGAACAACAAAAGAACTTTATGAAAG
CAGCGGACACAAAGTCACATTTCTTGCTTGAAGCGGCACAATTGAATGCA
GCTGAGGAGCTGGGTGGAACGCTTGTGCCACATTACATGTGCTGGAGGCC
TTGCAATCGTCACTTCCCCAACTGACCGCACCTCTGTCGACATGGCACAG
AAATTGACTCCTGATCAACAGGAGGCAGTCATTCACAAGTTCCGAGCAGA
GATGGCGGCTCAAGCCATGCAAGAATTGGTTCAAAAGATGACGGACAAGT
GCTTCAGCAAGTGTACGGGGAAAAGTGGGAATCGACTGGATTCCAAGGAG
CAGAACTGCGTCGCCATGTGCATGGACCGGTATATCGAGACCATGAATGT
AGTACAACATTCGCTTAGCGAGCGTAGTGCCACGCGATGATTGCCTTGGG
ACGGATTTACAAGAAGAGGATAGGGGGACATTTGTTGACAGCAAAACATC
GCTTTTGGTGTGCATCAAAGTTAAATAGGCATAACGCATTCCAAATATTC
TTTACGGTTGCTCTTTTGAGTATCTTTTAGATTGTGCTTTCTGTGGTGCT
GCCTGTTTATGGGCTTGTCGCTTGTTTCAAATGCATTATCATTTGATTTA
AGGGATAAATTCAATCCTCAGAATGATTCCGTGACCTATCTCAGGGTCTT
TGCTTTGGTACTTTCCCTTCGATATATCTTGCGAGTAACGTGGAGGAATA
GAAGGCCAATCATACATCCCAGGTAATGTATGGCAGAATCGGCCGAGATC
CGTGCCTTTGAAA
back to top

protein sequence of rna7943

>rna7943-protein ID=rna7943-protein|Name=rna7943|organism=Nannochloropsis gaditana|type=polypeptide|length=542bp
MSSPARGHVENMLADQTEGSDDNWLRDFREMKQSILMSPAGTSSTGFPSP
ARRISEVDPAAVNGDHLDQEIKSIVDILQDEDAANKKLNIGSSHHPVIGG
KEKAIKGPYDRLTGCAPAASPLSSSSSSSSESSRASSPESTPSPGHGGFK
NSSSHESSCYSPNAYQILRSEQPLAPPFIDDPTEDNRKPSYTDMHRTTNY
QELHQAQPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKAR
IQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYE
AHIARVEKEANVLRDRNVHLEAWRLDQRQQSEESRGQGRADACGGEGDSQ
GCNRPDRPTPSPSRKNRKSLYGATKPAPHNAQDTFWSPTSALSTAMRMNG
SQPAPTGVLVALKGKVKELQRQVNDLKQETGELRRRERQFLVQKRMVETT
WARVQKVQFMAKGLESSLASSRLDGARAEARLEEAEGEIRALRQREAVLV
MDRDRCLQELEVIRRQLGGVGNARGSAFSKGTHGRERDCPRR
back to top

mRNA from alignment at KK037247.1:171355..173180+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7943 ID=rna7943|Name=rna7943|organism=Nannochloropsis gaditana|type=mRNA|length=1826bp|location=Sequence derived from alignment at KK037247.1:171355..173180+ (Nannochloropsis gaditana)
AGCATGTTTTTAATCGGATTTTACGCGACTACAGGCGCCAAAAGCTTTCC
CTTGCCCATATGTCTTCGCCCGCCCGAGGACACGTCGAAAATATGTTAGC
CGACCAAACAGAAGGCAGCGACGACAATTGGCTACGAGACTTCCGAGAAA
TGAAGCAGTCAATACTGATGTCGCCTGCAGGCACCTCATCGAcaggcttt
ccttccccagcACGCCGCATATCAGAGGTAGACCCTGCGGCCGTCAACGG
TGATCATTTAGATCAGGAAATTAAATCTATCGTAGATATTCTTCAAGACG
AAGATGCAGCGAACAAGAAGTTGAATATTGGCAGCAGCCATCATCCCGTG
ATCGGAGGTAAAGAAAAGGCAATTAAGGGTCCGTACGACAGATTGACTGG
GTGCGCACCGGCAGCCagtcccttgtcctcttcctcctcctcctcgtctg
aaTCGTCCCGTGCTTCCTCTCCAGAGAGCACTCCCTCGCCAGGCCACGGC
GGCTTCAAAAACAGCAGTAGCCACGAAAGCAGCTGCTACAGCCCTAATGC
CTATCAAATCCTCCGCAGTGAGCAGCCTCTGGCACCACCCTTTATTGACG
ATCCGACGGAAGACAACAGAAAGCCTTCCTACACGGACATGCACCGGACG
ACGAACTATCAGGAACTACATCAAGCCCAACCATCTTGGGCCCCGGAAAC
ACAGCACGAGGAGTCTTCGTTAGCCCGGCCTCCCAGCGATATCGCCTCGG
GTAATTTGCTAAGGATGCTGtacgaagagaaggagcgagggcaGGGACAA
AAAGCGCGGATCCAGGGATTGGAAGTGGCCCTGGCCGAGACAACacaaga
aaaggaggtaGCTATGGCCTCGGCTCGTCTTGAAATTCACGAACTTAGAG
GCATGCTTCGGCGAGTGGCCTCTGAAAGTACCTTTTCCGACGTCTTCACG
CTCTACGAGGCTCACATTGCCcgcgtggagaaggaggcaaaCGTGCTGCG
GGACCGCAATGTCCACCTAGAAGCTTGGCGACTGGATCAACGGCAACAAA
GcgaggagagcagggggcaaggaagggctGATGCctgtggaggggaaggc
gacagCCAAGGTTGCAATCGACCCGATCgtcccactccctcgccaTCGCG
AAAGAATAGAAAGTCTCTTTATGGGGCGACAAAACCAGCGCCCCATAATG
CACAGGATACATTTTGGAGCCCCACGTCGGCTCTGTCAACGGCAATGAGA
ATGAACGGAAGCCAGCCGGCACCGACAGGGGTGCTCGTTGCGTTAAAGGG
TAAAGTCAAGGAGTTACAACGGCAGGTGAACGATCTCAAGCAAGAGACTG
GGGAGCTGCGGCGGCGAGAACGACAATTTTTGGTGCAGAAGCGCATGGTC
GAGACGACGTGGGCCCGAGTGCAAAAGGTTCAATTTATGGCGAAAGGCCT
GGAAAGCAGCCTGGCTTCCTCTCGACTCGACGGGGCACGGGCAGAGGCTC
GTTTGGAAGAAGCTGAGGGAGAGATCCGGGCTTTGCGTCAGCGGGAAGCG
GTGTTGGTCATGGACCGCGACAGGTGTTTGCAGGAGCTTGAGGTGATTCG
CAGGCAACTTGGTGGCGTTGGCAATGCCCGGGGCAGTGCCTTTTCCAAAG
GAACGcatgggagagagagagattGTCCGAGGCGCTAGAATGGACTTGGG
AATGGTGAATTTTCGAAATGAGGAAGCCTGGCGTCGCAAATATGCAGCGT
AGCTATCATAGTCACAGTATTTGCCGGGAGGGCAACTTTATAAAGCGCAA
TAAAGAAATCAGATATCTAATATCGT
back to top

Coding sequence (CDS) from alignment at KK037247.1:171355..173180+

>rna7943 ID=rna7943|Name=rna7943|organism=Nannochloropsis gaditana|type=CDS|length=1629bp|location=Sequence derived from alignment at KK037247.1:171355..173180+ (Nannochloropsis gaditana)
ATGTCTTCGCCCGCCCGAGGACACGTCGAAAATATGTTAGCCGACCAAAC
AGAAGGCAGCGACGACAATTGGCTACGAGACTTCCGAGAAATGAAGCAGT
CAATACTGATGTCGCCTGCAGGCACCTCATCGAcaggctttccttcccca
gcACGCCGCATATCAGAGGTAGACCCTGCGGCCGTCAACGGTGATCATTT
AGATCAGGAAATTAAATCTATCGTAGATATTCTTCAAGACGAAGATGCAG
CGAACAAGAAGTTGAATATTGGCAGCAGCCATCATCCCGTGATCGGAGGT
AAAGAAAAGGCAATTAAGGGTCCGTACGACAGATTGACTGGGTGCGCACC
GGCAGCCagtcccttgtcctcttcctcctcctcctcgtctgaaTCGTCCC
GTGCTTCCTCTCCAGAGAGCACTCCCTCGCCAGGCCACGGCGGCTTCAAA
AACAGCAGTAGCCACGAAAGCAGCTGCTACAGCCCTAATGCCTATCAAAT
CCTCCGCAGTGAGCAGCCTCTGGCACCACCCTTTATTGACGATCCGACGG
AAGACAACAGAAAGCCTTCCTACACGGACATGCACCGGACGACGAACTAT
CAGGAACTACATCAAGCCCAACCATCTTGGGCCCCGGAAACACAGCACGA
GGAGTCTTCGTTAGCCCGGCCTCCCAGCGATATCGCCTCGGGTAATTTGC
TAAGGATGCTGtacgaagagaaggagcgagggcaGGGACAAAAAGCGCGG
ATCCAGGGATTGGAAGTGGCCCTGGCCGAGACAACacaagaaaaggaggt
aGCTATGGCCTCGGCTCGTCTTGAAATTCACGAACTTAGAGGCATGCTTC
GGCGAGTGGCCTCTGAAAGTACCTTTTCCGACGTCTTCACGCTCTACGAG
GCTCACATTGCCcgcgtggagaaggaggcaaaCGTGCTGCGGGACCGCAA
TGTCCACCTAGAAGCTTGGCGACTGGATCAACGGCAACAAAGcgaggaga
gcagggggcaaggaagggctGATGCctgtggaggggaaggcgacagCCAA
GGTTGCAATCGACCCGATCgtcccactccctcgccaTCGCGAAAGAATAG
AAAGTCTCTTTATGGGGCGACAAAACCAGCGCCCCATAATGCACAGGATA
CATTTTGGAGCCCCACGTCGGCTCTGTCAACGGCAATGAGAATGAACGGA
AGCCAGCCGGCACCGACAGGGGTGCTCGTTGCGTTAAAGGGTAAAGTCAA
GGAGTTACAACGGCAGGTGAACGATCTCAAGCAAGAGACTGGGGAGCTGC
GGCGGCGAGAACGACAATTTTTGGTGCAGAAGCGCATGGTCGAGACGACG
TGGGCCCGAGTGCAAAAGGTTCAATTTATGGCGAAAGGCCTGGAAAGCAG
CCTGGCTTCCTCTCGACTCGACGGGGCACGGGCAGAGGCTCGTTTGGAAG
AAGCTGAGGGAGAGATCCGGGCTTTGCGTCAGCGGGAAGCGGTGTTGGTC
ATGGACCGCGACAGGTGTTTGCAGGAGCTTGAGGTGATTCGCAGGCAACT
TGGTGGCGTTGGCAATGCCCGGGGCAGTGCCTTTTCCAAAGGAACGcatg
ggagagagagagattGTCCGAGGCGCTAG
back to top
Synonyms
Publications