EWM22748.1, cds7921 (CDS) Nannochloropsis gaditana

Overview
NameEWM22748.1
Unique Namecds7921
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:171414..173042 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22748.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100143g3.3777.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:171414..173042 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22748.1 vs. NCBI_GenBank
Match: gi|585103347|gb|EWM22748.1| (hypothetical protein Naga_100143g3 [Nannochloropsis gaditana])

HSP 1 Score: 1117.06 bits (2888), Expect = 0.000e+0
Identity = 542/542 (100.00%), Postives = 542/542 (100.00%), Query Frame = 0
Query:    1 MSSPARGHVENMLADQTEGSDDNWLRDFREMKQSILMSPAGTSSTGFPSPARRISEVDPAAVNGDHLDQEIKSIVDILQDEDAANKKLNIGSSHHPVIGGKEKAIKGPYDRLTGCAPAASPLSSSSSSSSESSRASSPESTPSPGHGGFKNSSSHESSCYSPNAYQILRSEQPLAPPFIDDPTEDNRKPSYTDMHRTTNYQELHQAQPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRLDQRQQSEESRGQGRADACGGEGDSQGCNRPDRPTPSPSRKNRKSLYGATKPAPHNAQDTFWSPTSALSTAMRMNGSQPAPTGVLVALKGKVKELQRQVNDLKQETGELRRRERQFLVQKRMVETTWARVQKVQFMAKGLESSLASSRLDGARAEARLEEAEGEIRALRQREAVLVMDRDRCLQELEVIRRQLGGVGNARGSAFSKGTHGRERDCPRR 542
            MSSPARGHVENMLADQTEGSDDNWLRDFREMKQSILMSPAGTSSTGFPSPARRISEVDPAAVNGDHLDQEIKSIVDILQDEDAANKKLNIGSSHHPVIGGKEKAIKGPYDRLTGCAPAASPLSSSSSSSSESSRASSPESTPSPGHGGFKNSSSHESSCYSPNAYQILRSEQPLAPPFIDDPTEDNRKPSYTDMHRTTNYQELHQAQPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRLDQRQQSEESRGQGRADACGGEGDSQGCNRPDRPTPSPSRKNRKSLYGATKPAPHNAQDTFWSPTSALSTAMRMNGSQPAPTGVLVALKGKVKELQRQVNDLKQETGELRRRERQFLVQKRMVETTWARVQKVQFMAKGLESSLASSRLDGARAEARLEEAEGEIRALRQREAVLVMDRDRCLQELEVIRRQLGGVGNARGSAFSKGTHGRERDCPRR
Sbjct:    1 MSSPARGHVENMLADQTEGSDDNWLRDFREMKQSILMSPAGTSSTGFPSPARRISEVDPAAVNGDHLDQEIKSIVDILQDEDAANKKLNIGSSHHPVIGGKEKAIKGPYDRLTGCAPAASPLSSSSSSSSESSRASSPESTPSPGHGGFKNSSSHESSCYSPNAYQILRSEQPLAPPFIDDPTEDNRKPSYTDMHRTTNYQELHQAQPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRLDQRQQSEESRGQGRADACGGEGDSQGCNRPDRPTPSPSRKNRKSLYGATKPAPHNAQDTFWSPTSALSTAMRMNGSQPAPTGVLVALKGKVKELQRQVNDLKQETGELRRRERQFLVQKRMVETTWARVQKVQFMAKGLESSLASSRLDGARAEARLEEAEGEIRALRQREAVLVMDRDRCLQELEVIRRQLGGVGNARGSAFSKGTHGRERDCPRR 542          
BLAST of EWM22748.1 vs. NCBI_GenBank
Match: gi|553191332|ref|XP_005855363.1| (hypothetical protein NGA_2048100, partial [Nannochloropsis gaditana CCMP526] >gi|422293697|gb|EKU20997.1| hypothetical protein NGA_2048100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 422.165 bits (1084), Expect = 5.213e-144
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0
Query:  178 FIDDPTEDNRKPSYTDMHRTTNYQELHQAQPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRLDQRQQSEESRGQGRADACGGEGDSQGCNRPDRPTPSPSRKNRKSLYGATKPAPHNAQD 383
            F DDPTEDNRKPSYTDMHRTTNYQELHQA PSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRLDQRQQSEESRGQGRADACGGEGDSQGCNRPDRPTPSPSRKNRKSL+GATKPAPHNAQD
Sbjct:    1 FNDDPTEDNRKPSYTDMHRTTNYQELHQAPPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRLDQRQQSEESRGQGRADACGGEGDSQGCNRPDRPTPSPSRKNRKSLHGATKPAPHNAQD 206          
BLAST of EWM22748.1 vs. NCBI_GenBank
Match: gi|298714566|emb|CBJ27557.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.7962 bits (190), Expect = 2.994e-11
Identity = 81/321 (25.23%), Postives = 135/321 (42.06%), Query Frame = 0
Query:  233 LLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRLDQ-RQQSEESRGQG-----------------------------RADACG---GEGDSQGCNRPDRPTPSPSRKNRKSLYGATKPAPHN--AQDTFWSPTSALSTAMR--MNGSQPAPTGVLVALKGKVKELQRQVNDLKQETGELRRRERQFLVQKRMVETTWARVQKVQFMAKGLESSLASSRLDGARAEARLEEAEGEIRALRQREAVLVMDRDRCLQELEVIRRQ 516
            LLR++ E+++RG+    R +  E    E     E  +   R E  E RG LRR    S  ++VF  YEAH   +E E   LRD+N+ LE   LD  RQ +  +   G                             RA A G   G  DS+ C +  +P     ++   S          +    D    P+ ++  A +   +G  P    VL  L+ ++KE + +   ++ E   + +R+R    Q R ++   +++++     +  E  L +SRL+ ARAE   E+   E+  L   +A LV +R+  +  L   R++
Sbjct: 1322 LLRVVREQEDRGKQMIRRFEAKECDWLERVTTLEADLEGLRAEAVETRGRLRRAEESSPSAEVFERYEAHTGILEAENTSLRDQNISLELRLLDTLRQSTTTASSTGRTTVATETNSHLSLSGCQQHRHHAALVSTRATATGEKEGNQDSEICPKQHKPGTGALQQAEASAKACVDGGATSRFRVDGRVPPSGSVGEAGKPWPSGGTPMCAAVLKDLRRRLKEAELEAKKMRAERAGMDKRDRLCQAQLRTLKEQRSKLREFLLREREHEVKLTASRLESARAEVIAEDKAAEVEHLLDNQAALVAEREDLVLALAEERKK 1642          
The following BLAST results are available for this feature:
BLAST of EWM22748.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585103347|gb|EWM22748.1|0.000e+0100.00hypothetical protein Naga_100143g3 [Nannochloropsi... [more]
gi|553191332|ref|XP_005855363.1|5.213e-14498.54hypothetical protein NGA_2048100, partial [Nannoch... [more]
gi|298714566|emb|CBJ27557.1|2.994e-1125.23conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7943rna7943Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications