rna7941, rna7941 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7941
Unique Name	rna7941
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3013
Alignment location	KK037247.1:169741..171309 -

Link to JBrowse

Properties


Property Name	Value
Product	translocase of inner mitochondrial membrane 13
Orig transcript id	gnl\|cribi\|Naga_100143g2.3775.mrna
Orig protein id	gnl\|cribi\|Naga_100143g2.3775
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:169741..171309 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100143g2	gene7691	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7941	rna7941-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22746.1	cds7919	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:169741..171309-
coding sequence from alignment at KK037247.1:169741..171309-

mRNA sequence

>rna7941 ID=rna7941|Name=rna7941|organism=Nannochloropsis gaditana|type=mRNA|length=3013bp
ATTGGTACTCTTGCAGCGCGTTTTTGCCACGTACCTAAGATCCTTATAAA
TGAACAGGCGCTTCCACCATTTTACGACGGAAATCACGCTACAATGATTT
CAAGAACGCTGAAAGGAGCGAGACATACAAGGTGTATACGGTCCTACCTG
TCGTCAGTATTTTTCCAACATCACTATCCTCAAGTAGTACCGCTTATAAT
TCGGGGCGCACAAAACCTGAGCACTCTCCCGGGCACCCCATCTAGCGCTT
CCATTAACCTTCGGTCGACCACGTCTACATCTCATGTACCCTCAGAGAAG
TCTACGTTGGTCGTGCCCGACCCGTCGCCCCCTTCCCGTCCCGCCCGGAA
GACCTTTCAACATTTTCTGGCCCTTGCCCGTCCCGAGACCCCGGCATTCC
TGACCGCCTTGGCGGCCGTGGCCGTAGGGACAGGGACGACGGTGGTCTTT
CCTTTCGCGATAGGGAAATGCATGGATGCCATGGCCCTGGGAAACACGAA
GCAGCTGGTCGACAGATCCAAAGGCACGGCCGATGGCACCCTGCCGGCAA
TTGACACGACAGCGGCCCATCTTAGCATGAACGCGAGTGAATTCATCGAG
GCAAGCTTTGGGCCCGGCGTCATACCGGCTTGGGTCATGGACCTCATTCC
TCCGGATGCTGCGCCGCTCTCCGTGTTGAGTGCGGGATTGGTGGGAGTGT
TTGTGGTTGGCGCTCTGGCAACTTTTGTTCGGAACACCACGGTGCATGTG
GCGGGGGAACGCATCGCTGCCCGCTTACGAAAGCGGGTCTTTGCATCCGT
CGTGCACCAACGCCTGGCGTTTTTTGACCGGTCGGGGACGGGCGAGGTTA
TGAACCGGCTTTCAAATGACGTTACCCAGGTGGCTAAGACGCTTTCGGAG
GATACAAGCTATTTCTTGCGGAATTTCGCGCAGGGGGCGGGGGCGTTGGG
CATGATGCTTTACACTTCTCCACAGCTCTGCGCCATCATGCTGGGTGTGA
TCCCCCCCGTGGCAGTGTGGGGGGTGTTTTTTGGGAAAAAAGTGCGCGAC
TTGTCGAAGCAGATGGTGGACGAGTTGGCCAATGCGGGCAGCATCGCCGA
GGAACGAATCTCGAACATTCGGACGGTGCGAGCCCTGGGAAACGACGAGC
TGGAAGTGGGGCGGTATGCCCACCAGATGAACAATGTCTTCCGGGTAGCG
AAACACAAGAGCCTTATGCAAGGTATCTATTACGGCGTGGCCATGGGGTC
CGGGAATTTGGGCATGGTGACTGTCTTATACTTTGGCGGGCAGTACGTGA
GCGAAGGGTTGATCACCGTGGGCGATCTTTCCACCATGTTGCTGTATTCG
GTGTACGCGGGCTTTTCGATCTCGGCGCTCTTGTCGTACTACGGCGATTT
GATGAAAGCCGCCGGTTCGGCAGAACGCATCTTTGACCTGTTGGAGACGG
AGAAAACACCATCGCGAGGACGAGTAACACCGACACAAGTGCTCAAAGGA
GCAATGGATAAGGAAGGATCTCGGATGAAGACCTGGCCTCAAGTTCGGGG
ACCCCTGATCTTCGAGGGCGTGTCTTTTGCCTACCCTACTCGCCCTGACT
TTCCAATTTTTCAAGACTTAGACCTGGAAGTGCGCGAAAACGAGACCTTG
GCCCTGGTCGGTCCCTCCGGTAGCGGGAAATCGTCCATTGCTGGTCTGGT
CACACGCATGTACGAGCCGAACGCAGGGAGGATATCTTTTGGCCCTGAGC
GCGTGCCTTTAGAGAGCGTACCGAAGGAACACTTGCGAAAAAGCATCTCT
TATGTGACTCAGGATGCAGTCCTCTTCTCTGGGAGTGTCCGTGACAATTT
ATTCTTGGGCTTTCCCGATATTGAATCGTCACATTTGTCGGTGGACGACG
GTCTCAACTTGTTCCCTTTACTAGAAAAACAAGAACCATTCACCTTTGGA
CATGGGGTACAAGGAGGAAATGCTTGGAATATGGAGGAGAGGATGTCCCG
GGTCAGGGAAGCGTGTCGAACCGCCAATTGCTTGGCGTTTATTGAGCAGT
GGGAAGACGGCTTCGATACTGTGATCGGAGAGCGCGGGGCACAATTGAGT
GGCGGGCAACGAGCTCGGCTGGCGCTGGCACGGGCCATATTGAGGGATTC
ACACGTGCTCTTACTCGATGAAATCTCGGCAGCTCTGGATTCTGTGTCTG
AAGCGGCTCTTCACACTGCCTTGGAAAGAGTCTTAAAGAATCGAACGACC
CTCCTTATTGCCCATCGTTGGTCTTCCATACAAATCGCGGACCGTATTGC
CGTTCTCGGCGATGGAAAGATTATCGAGATCGGGACCCCCCAAGATCTTC
TTTCCACGTCTTATAATAGCGCCTTCCGCCGCTTGGTGGAACATCAGTTA
AAAGCGGCTCCGACAATGTAGAGAACTAAATATCGAGCCCATTATGAGCG
CAAATTTTGTCGAAACATGCATGTACAAGATGAAATGAAAGCTTATTACG
GAGAAGTATGTATGTTGCTCGAAAGTTTCGCAAAGGGGGCAGTTGTTTGT
TGACTGTACAATTATTTCCTATAGCGATGCTTAGCACTAGTCCATAGAGG
CTAAGTTCTAGTGCTCTCGCTTTATATAATTTGATATCACCGTGTACGAT
TGATAGCTAGATATACCCCAATTTCCAATATCGCAAGGCCTATTACTTTC
ACAAAGAACACTTTGTCCGAGATTGCGTGTTGGCTGATTGTGATAAAACC
ATCGTGTAAAACACTTAGAGCTAGAAACGCTTCTGAAATAAGGGAAGGCG
TCGCAACGTATCTTCCAATTTATTGGAAGCGGCGTCTGCCGCTGAGTCTT
CCATTCTTCTCTTTTTGTCACCGACAGGACATATCATTGCAATTATCGAG
AGCTAACTCACAATGCTTTGCTTTTTAAAGCATTTTTTAGTTAGAATAAA
TGTCGAATATCAACAAGCGATTTACCAAATTCAGTGCTAGAAATGATCAG
CCCTTCTCGCCCG

protein sequence of rna7941

>rna7941-protein ID=rna7941-protein|Name=rna7941|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MAQKLTPDQQEAVIHKFRAEMAAQAMQELVQKMTDKCFSKCTGKSGNRLD
SKEQNCVAMCMDRYIETMNVVQHSLSERSATR

mRNA from alignment at KK037247.1:169741..171309-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7941 ID=rna7941|Name=rna7941|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp|location=Sequence derived from alignment at KK037247.1:169741..171309- (Nannochloropsis gaditana)
CATACAGATATACCGCGCAGCCATGCAGAAGATAATTTTGTCAACGCCAT
TTTTTGGCACGGGAAACAGAGGCGTTTCGACCCCTCGCTTGGCGACGCTC
GAGAGAGCGCCCGCCCCAAATCCCCCCCGTGGCCTCTGAACAACAAAAGA
ACTTTATGAAAGCAGCGGACACAAAGTCACATTTCTTGCTTGAAGCGGCA
CAATTGAATGCAGCTGAGGAGCTGGGTGGAACGCTTGTGCCACATTACAT
GTGCTGGTAGTGATAAACGTTCGCTGTCTTATACGTACAATATCTGAGAA
GCCCTCCTAAGTCTGGTACAACTTAAGTAGTGAAAAGCCCTTTAAAAAAT
CTGTTTTGGTCCCACATATGCGCTAGAAGAGGACGTTCAACAAGTCTGAC
TCTCTATCTCCATGGCCCTGTCCTATATCGCTTGTCCTTGCTCACGACAC
AGGAGGCCTTGCAATCGTCACTTCCCCAACTGACCGCACCTCTGTCGACA
TGGCACAGAAATTGACTCCTGATCAACAGGAGGCAGTCATTCACAAGGTG
CGCACAATAGAAATTCAAAAACAAGTGTGGTGCATGTCTTTAATTTATTG
TCTCCGTAGAGAGGGGTATTGATGGGGAGCGGTACATGAAAAAGAGTCCT
TGCGAAGTTTGCGAATAAAAGTGTTAAAGTGAACGCACATTTAATAGCAA
TGTTGTGGAGACTACAGCCATTAGAGCAACCTTACAGAGATCTAGACACC
AGGGACACACATTATCACCCGACGCAATGGCTGGGACTGACCATTATTTC
CCTACCGCGACTTTTTGGTAGTTCCGAGCAGAGATGGCGGCTCAAGCCAT
GCAAGAATTGGTTCAAAAGATGACGGACAAGTGCTTCAGCAAGTGTACGG
GGAAAAGTGGGAATCGACTGGATTCCAAGGTAAATTTCGGGTGTGGGGAT
GTTGGAAAAAGTGCAAGGCAGAGATCCAGGTCGTTCTTGGAGGAGCACTG
TTGCACGTTTGCTCGAAGCGTTTCCGCAGTTTTGAACCCTCTTTTTTGAC
CCGCTTTTGGCGCGATGCATTCCCATGTTTCCATTCGCAAATGCACTTGA
CAGGAGCAGAACTGCGTCGCCATGTGCATGGACCGGTATATCGAGACCAT
GAATGTAGTACAACATTCGCTTAGCGAGCGTAGTGCCACGCGATGATTGC
CTTGGGACGGATTTACAAGAAGAGGATAGGGGGACATTTGTTGACAGCAA
AACATCGCTTTTGGTGTGCATCAAAGTTAAATAGGCATAACGCATTCCAA
ATATTCTTTACGGTTGCTCTTTTGAGTATCTTTTAGATTGTGCTTTCTGT
GGTGCTGCCTGTTTATGGGCTTGTCGCTTGTTTCAAATGCATTATCATTT
GATTTAAGGGATAAATTCAATCCTCAGAATGATTCCGTGACCTATCTCAG
GGTCTTTGCTTTGGTACTTTCCCTTCGATATATCTTGCGAGTAACGTGGA
GGAATAGAAGGCCAATCATACATCCCAGGTAATGTATGGCAGAATCGGCC
GAGATCCGTGCCTTTGAAA

Coding sequence (CDS) from alignment at KK037247.1:169741..171309-

>rna7941 ID=rna7941|Name=rna7941|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at KK037247.1:169741..171309- (Nannochloropsis gaditana)
GAGCAGAACTGCGTCGCCATGTGCATGGACCGGTATATCGAGACCATGAA
TGTAGTACAACATTCGCTTAGCGAGCGTAGTGCCACGCGATGATTCCGAG
CAGAGATGGCGGCTCAAGCCATGCAAGAATTGGTTCAAAAGATGACGGAC
AAGTGCTTCAGCAAGTGTACGGGGAAAAGTGGGAATCGACTGGATTCCAA
GATGGCACAGAAATTGACTCCTGATCAACAGGAGGCAGTCATTCACAAGG
AGCAGAACTGCGTCGCCATGTGCATGGACCGGTATATCGAGACCATGAAT
GTAGTACAACATTCGCTTAGCGAGCGTAGTGCCACGCGATGATTCCGAGC
AGAGATGGCGGCTCAAGCCATGCAAGAATTGGTTCAAAAGATGACGGACA
AGTGCTTCAGCAAGTGTACGGGGAAAAGTGGGAATCGACTGGATTCCAAG
ATGGCACAGAAATTGACTCCTGATCAACAGGAGGCAGTCATTCACAAGGA
GCAGAACTGCGTCGCCATGTGCATGGACCGGTATATCGAGACCATGAATG
TAGTACAACATTCGCTTAGCGAGCGTAGTGCCACGCGATGATTCCGAGCA
GAGATGGCGGCTCAAGCCATGCAAGAATTGGTTCAAAAGATGACGGACAA
GTGCTTCAGCAAGTGTACGGGGAAAAGTGGGAATCGACTGGATTCCAAGA
TGGCACAGAAATTGACTCCTGATCAACAGGAGGCAGTCATTCACAAG

Synonyms

Publications