rna7938, rna7938 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7938
Unique Name	rna7938
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	974
Alignment location	KK037247.1:157811..160040 +

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Properties


Property Name	Value
Product	AP complex, mu/sigma subunit
Orig transcript id	gnl\|cribi\|Naga_100516g3.10604.mrna
Orig protein id	gnl\|cribi\|Naga_100516g3.10604
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:157811..160040 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100516g3	gene7688	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7938	rna7938-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22756.1	cds7916	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:157811..160040+
coding sequence from alignment at KK037247.1:157811..160040+

mRNA sequence

>rna7938 ID=rna7938|Name=rna7938|organism=Nannochloropsis gaditana|type=mRNA|length=974bp
ACAGCTCAATCCACGGTAAACTTTACACAGCAGAATAAAGAGCCATACAA
GGGAGCCATGCCGACACCTTTAGAGCTAATTCCATCGACGACCAGTCCTG
AACCAAGCCCTACCTCAAAAGCCTCCCTGCAGCCTCAATTGTATCAACCC
TCGCGGGCAGCAGTCGCACGAATGCACGCCTTAGAACTGGAGGGGCGCCT
GGAGGCTTGTTTTACCTACTGTGAGTGTGGTTGTCGCGTCTTGAAAAGGC
TGGTCTCCTACATGGTTAGCATCGCGATATTCATTTTTACTAGCCTCGTC
ATTCGTCTGGGATTGCTTATCGTGGCTGGAGTCGCTCTGTATTATTCTTT
TTTGCTCAGCCTCGGGAAGATCTCCGGCGTAAAGGATCCAAAGCTTCAAG
GTGGGAGGGAGGTTTCAGACGGATGGAGTAAGGAAATGATGGCAAGGAGC
CCTGATTTCTATTTAGTAGTCTTGGTGATGATTACGTCATTATTTTAGGC
GCATGTGTGGGTCTACATATTTCTTGGGTACATCAATAAGAAAGGGAGAT
GATACACGCACTCGTTTATGGTCTGACTTCACTACACCATCACGTTCTGC
CCAACTTTGCACAGATTACTTCTCATATTCTTCGTTCAAAAACTACTGGG
GGTGGACTTAAGAAAGACAAATAATGGCCACTTACAGCCGTTAAAAAAAA
AGAAAAGAGAAGAACATTGTATCTGTAAAATGGAAAAAATCGAACTCGCA
CGTACTTCCACCCTTTTTCATACTCTAAAAGCAATGATTGTTTGGAAAAT
GAGATAAGGTCGCTGCATTTTTTCAGAGTGCTGTAGCTGTGACTTTGTCC
AGTAGGAAATAGATACATTGATCGCAGCATGTTCATACCTTCCTCGATGA
ATCAAATCAGGAAAATACATAAAACGTATTCATGATAGATCCAACGGTAT
AAAGCAAAGATTGTTATCCTTTGT

protein sequence of rna7938

>rna7938-protein ID=rna7938-protein|Name=rna7938|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRH
NNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDA
IAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRG
VSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF

mRNA from alignment at KK037247.1:157811..160040+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7938 ID=rna7938|Name=rna7938|organism=Nannochloropsis gaditana|type=mRNA|length=2230bp|location=Sequence derived from alignment at KK037247.1:157811..160040+ (Nannochloropsis gaditana)
TCGTTGTATGACAAGCTGTCCGACGGGAGCCTTCCTTTCATCTCCATTAC
GATCGCGCAGAGAAGTTGGCGATGCGCCCATGTCATGCCCTCATGATACC
AGAATTACCCTCCGATGAGTTGCTCTGTAGAAAATGAATATAAAATGCAA
GTCTATACCACCTTTGCTCATGTTATAGGTTACTGGAACGTTTATCGATC
CCTCGCGATTTTCGTCGAGGGCGTCTAGAGCTCTGTTTGGGTACCTCGCT
GCTGTCTGTTGATCAAAGACATTCTTGCAAGACTACTACTCCACTCCAAA
AAGGACAAGCCTCCGCAAACTATGTCAGACGTAAGTTCCAAAAAGTTCTC
CCTGCCCTTGGTTCCAAGGATCCCTTCACGGTCATTCCCCCACGTCCCTG
CTCACACTCCTGGaatccctttccttcccgttcTTGTATCCCATCTCTTT
CCGCTTACCCCATCCTTAGCCCTTTGTCCCCTCAGTTACTGCCATATTCG
TGCTTGACAATGATGGTCAGCGGCTATCAGCGAAGTATTTCAACCCGATA
TTCGCCACCAACGCAGAAAAGGTGCGTGTGTCGATAATGGGGGGGGTCAG
GAAGGAGTGGAGATGTGTAGGATGAGGCGATGTATAATCGTGCGGAAGAA
GCCCGCCTTTGATATTCTTTGAAACAAAGTGACATGTATCCTCCTGAGAA
GATCGTTGGGCACAGGGGGTGATGGACTCATCAGGCCGCGTGAGCCTTTT
TCCGGAGCATGCCTCTTACGCCTTATATTCCCTTTCGTATCTGGGCTCCC
ATCGCATCAATGTGAAACGCCAATTCCGTGTAGATGGCATTTGAGATGCG
TGTTTTCAAAAAAACCCGGCACAACAACGCCCGCTCCGAATGTacgtggg
gaagggagagaacgaggaggagacaagcAAGGGGAAAATGTAGCACGTGA
CACATGGGGGTTTGGGTGTACAGGGTTCCGATACTGTATTCATAAGAAAA
ACTTGAGGGCTAAGGGATCGATCCCAAGGGCACGGGAGCAAGTGGGGTGT
AAAATTTTGCGAAAGACGTGGTATTTCACGCGCGGTGCAGGACGGTGGAG
CGCATGAAAGGCTGTGGTGGCGTCGATAGTGAATTACCGCTTATTTTTCA
CGTGTTcatcatcctctttctctgGGTTACACCACTTCACGGTCGCTTCC
TGGCCTCAGCCGAGATCATAACAATAGACAACTTCACCGTCGTTTTTCGG
TCCGGCACTGATGCGCACTTTTATGTGGTGGGAGATGcgaaggaggtagg
aagggagggcggaacgttagagaaaaagggcaagCAAGGTGGAGCAGTGC
GCGTCAAGTCAAAAATGGACGGCGTTTACGCACGTGGGACCTATACACAA
CATTTCCGTGGGGTTCCCTGGATTCTGTCACAGAACGAGCTAATCTTGGC
CACTGTGCTGGACGCGTTTCGCGACGCCATTGCCATGCTCCTGCGGTacg
ttccttcctccttccccatcttcttcttctttctgtGTACTGCATAGCAA
TGGGAAGGTATTGAATCTCTCTCTTTGGAAAAGAGGCTGGGAGTGTGACG
TTGTGGAAGCGTCTGACGCGATACCCTCCGGACAGGGGCCAAGTGGACCG
TCGCTCGCTTTTGGATAATCTGGACCTGCTCATGCTCACAGTGGATGAGT
TGGTGGACGGTGGAATCATCTTGGAAACGGATTCTTCCGCTATTGTCGCG
CGTGTTTTGATGTAAGGGagtgggcgggaggtggagggaaggaggagagt
gctTGCCACTCATAGGTTGGGTGCCCCCGTCCCGCAGATGTTCCGTCCTC
CGTGAATTCATGTGTTTAGAGCCTCTTGCTTGTAAGGAATGGATTCTTTG
GCCTGATCTGCGTTGCTTCTCCCACGTTACAGGCGGGGCGTATCCGGAGG
TCAAAATGTCCCCTTGGCGGACATGACCATCTCACAAGCATTCGCGTCTG
CGAAAGACTCCTTCATCAAAAGCATGGGGAATCGCGAAGGAAACTTTTAA
GGCCGTGATGGCAGACGGGAAGCGATATAAAAAGCAAACGATGGCAACAC
CCGACTCATGCTGTGGACGGGGttaggagaagggggggggaatggtgCGC
AAAATGGAACGAAGAGCTCTTAAAATCGAAAGCAAGCAAGAAGTCGAAAC
AAGACTTTGCCATAATGTTGTAGTCAAATG

Coding sequence (CDS) from alignment at KK037247.1:157811..160040+

>rna7938 ID=rna7938|Name=rna7938|organism=Nannochloropsis gaditana|type=CDS|length=3927bp|location=Sequence derived from alignment at KK037247.1:157811..160040+ (Nannochloropsis gaditana)
ATGTCAGACCCCTTTGTCCCCTCAGTTACTGCCATATTCGTGCTTGACAA
TGATGGTCAGCGGCTATCAGCGAAGTATTTCAACCCGATATTCGCCACCA
ACGCAGAAAAGATGGCATTTGAGATGCGTGTTTTCAAAAAAACCCGGCAC
AACAACGCCCGCTCCGAATCCGAGATCATAACAATAGACAACTTCACCGT
CGTTTTTCGGTCCGGCACTGATGCGCACTTTTATGTGGTGGGAGATGcga
aggagAACGAGCTAATCTTGGCCACTGTGCTGGACGCGTTTCGCGACGCC
ATTGCCATGCTCCTGCGGGGCCAAGTGGACCGTCGCTCGCTTTTGGATAA
TCTGGACCTGCTCATGCTCACAGTGGATGAGTTGGTGGACGGTGGAATCA
TCTTGGAAACGGATTCTTCCGCTATTGTCGCGCGTGTTTTGATGCGGGGC
GTATCCGGAGGTCAAAATGTCCCCTTGGCGGACATGACCATCTCACAAGC
ATTCGCGTCTGCGAAAGACTCCTTCATCAAAAGCATGGGGAATCGCGAAG
GAAACTTTTAAATGTCAGACCCCTTTGTCCCCTCAGTTACTGCCATATTC
GTGCTTGACAATGATGGTCAGCGGCTATCAGCGAAGTATTTCAACCCGAT
ATTCGCCACCAACGCAGAAAAGATGGCATTTGAGATGCGTGTTTTCAAAA
AAACCCGGCACAACAACGCCCGCTCCGAATCCGAGATCATAACAATAGAC
AACTTCACCGTCGTTTTTCGGTCCGGCACTGATGCGCACTTTTATGTGGT
GGGAGATGcgaaggagAACGAGCTAATCTTGGCCACTGTGCTGGACGCGT
TTCGCGACGCCATTGCCATGCTCCTGCGGGGCCAAGTGGACCGTCGCTCG
CTTTTGGATAATCTGGACCTGCTCATGCTCACAGTGGATGAGTTGGTGGA
CGGTGGAATCATCTTGGAAACGGATTCTTCCGCTATTGTCGCGCGTGTTT
TGATGCGGGGCGTATCCGGAGGTCAAAATGTCCCCTTGGCGGACATGACC
ATCTCACAAGCATTCGCGTCTGCGAAAGACTCCTTCATCAAAAGCATGGG
GAATCGCGAAGGAAACTTTTAAATGTCAGACCCCTTTGTCCCCTCAGTTA
CTGCCATATTCGTGCTTGACAATGATGGTCAGCGGCTATCAGCGAAGTAT
TTCAACCCGATATTCGCCACCAACGCAGAAAAGATGGCATTTGAGATGCG
TGTTTTCAAAAAAACCCGGCACAACAACGCCCGCTCCGAATCCGAGATCA
TAACAATAGACAACTTCACCGTCGTTTTTCGGTCCGGCACTGATGCGCAC
TTTTATGTGGTGGGAGATGcgaaggagAACGAGCTAATCTTGGCCACTGT
GCTGGACGCGTTTCGCGACGCCATTGCCATGCTCCTGCGGGGCCAAGTGG
ACCGTCGCTCGCTTTTGGATAATCTGGACCTGCTCATGCTCACAGTGGAT
GAGTTGGTGGACGGTGGAATCATCTTGGAAACGGATTCTTCCGCTATTGT
CGCGCGTGTTTTGATGCGGGGCGTATCCGGAGGTCAAAATGTCCCCTTGG
CGGACATGACCATCTCACAAGCATTCGCGTCTGCGAAAGACTCCTTCATC
AAAAGCATGGGGAATCGCGAAGGAAACTTTTAAATGTCAGACCCCTTTGT
CCCCTCAGTTACTGCCATATTCGTGCTTGACAATGATGGTCAGCGGCTAT
CAGCGAAGTATTTCAACCCGATATTCGCCACCAACGCAGAAAAGATGGCA
TTTGAGATGCGTGTTTTCAAAAAAACCCGGCACAACAACGCCCGCTCCGA
ATCCGAGATCATAACAATAGACAACTTCACCGTCGTTTTTCGGTCCGGCA
CTGATGCGCACTTTTATGTGGTGGGAGATGcgaaggagAACGAGCTAATC
TTGGCCACTGTGCTGGACGCGTTTCGCGACGCCATTGCCATGCTCCTGCG
GGGCCAAGTGGACCGTCGCTCGCTTTTGGATAATCTGGACCTGCTCATGC
TCACAGTGGATGAGTTGGTGGACGGTGGAATCATCTTGGAAACGGATTCT
TCCGCTATTGTCGCGCGTGTTTTGATGCGGGGCGTATCCGGAGGTCAAAA
TGTCCCCTTGGCGGACATGACCATCTCACAAGCATTCGCGTCTGCGAAAG
ACTCCTTCATCAAAAGCATGGGGAATCGCGAAGGAAACTTTTAAATGTCA
GACCCCTTTGTCCCCTCAGTTACTGCCATATTCGTGCTTGACAATGATGG
TCAGCGGCTATCAGCGAAGTATTTCAACCCGATATTCGCCACCAACGCAG
AAAAGATGGCATTTGAGATGCGTGTTTTCAAAAAAACCCGGCACAACAAC
GCCCGCTCCGAATCCGAGATCATAACAATAGACAACTTCACCGTCGTTTT
TCGGTCCGGCACTGATGCGCACTTTTATGTGGTGGGAGATGcgaaggagA
ACGAGCTAATCTTGGCCACTGTGCTGGACGCGTTTCGCGACGCCATTGCC
ATGCTCCTGCGGGGCCAAGTGGACCGTCGCTCGCTTTTGGATAATCTGGA
CCTGCTCATGCTCACAGTGGATGAGTTGGTGGACGGTGGAATCATCTTGG
AAACGGATTCTTCCGCTATTGTCGCGCGTGTTTTGATGCGGGGCGTATCC
GGAGGTCAAAATGTCCCCTTGGCGGACATGACCATCTCACAAGCATTCGC
GTCTGCGAAAGACTCCTTCATCAAAAGCATGGGGAATCGCGAAGGAAACT
TTTAAATGTCAGACCCCTTTGTCCCCTCAGTTACTGCCATATTCGTGCTT
GACAATGATGGTCAGCGGCTATCAGCGAAGTATTTCAACCCGATATTCGC
CACCAACGCAGAAAAGATGGCATTTGAGATGCGTGTTTTCAAAAAAACCC
GGCACAACAACGCCCGCTCCGAATCCGAGATCATAACAATAGACAACTTC
ACCGTCGTTTTTCGGTCCGGCACTGATGCGCACTTTTATGTGGTGGGAGA
TGcgaaggagAACGAGCTAATCTTGGCCACTGTGCTGGACGCGTTTCGCG
ACGCCATTGCCATGCTCCTGCGGGGCCAAGTGGACCGTCGCTCGCTTTTG
GATAATCTGGACCTGCTCATGCTCACAGTGGATGAGTTGGTGGACGGTGG
AATCATCTTGGAAACGGATTCTTCCGCTATTGTCGCGCGTGTTTTGATGC
GGGGCGTATCCGGAGGTCAAAATGTCCCCTTGGCGGACATGACCATCTCA
CAAGCATTCGCGTCTGCGAAAGACTCCTTCATCAAAAGCATGGGGAATCG
CGAAGGAAACTTTTAAATGTCAGACCCCTTTGTCCCCTCAGTTACTGCCA
TATTCGTGCTTGACAATGATGGTCAGCGGCTATCAGCGAAGTATTTCAAC
CCGATATTCGCCACCAACGCAGAAAAGATGGCATTTGAGATGCGTGTTTT
CAAAAAAACCCGGCACAACAACGCCCGCTCCGAATCCGAGATCATAACAA
TAGACAACTTCACCGTCGTTTTTCGGTCCGGCACTGATGCGCACTTTTAT
GTGGTGGGAGATGcgaaggagAACGAGCTAATCTTGGCCACTGTGCTGGA
CGCGTTTCGCGACGCCATTGCCATGCTCCTGCGGGGCCAAGTGGACCGTC
GCTCGCTTTTGGATAATCTGGACCTGCTCATGCTCACAGTGGATGAGTTG
GTGGACGGTGGAATCATCTTGGAAACGGATTCTTCCGCTATTGTCGCGCG
TGTTTTGATGCGGGGCGTATCCGGAGGTCAAAATGTCCCCTTGGCGGACA
TGACCATCTCACAAGCATTCGCGTCTGCGAAAGACTCCTTCATCAAAAGC
ATGGGGAATCGCGAAGGAAACTTTTAA

Synonyms

Publications