EWM22756.1, cds7916 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|585103356|gb|EWM22756.1| (AP complex, mu/sigma subunit [Nannochloropsis gaditana]) HSP 1 Score: 375.17 bits (962), Expect = 1.314e-131 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query: 1 MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF 186
MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF
Sbjct: 1 MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF 186
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|553190319|ref|XP_005855166.1| (nonclathrin coat protein zeta2-cop [Nannochloropsis gaditana CCMP526] >gi|422293890|gb|EKU21190.1| nonclathrin coat protein zeta2-cop [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 353.984 bits (907), Expect = 1.934e-122 Identity = 186/232 (80.17%), Postives = 186/232 (80.17%), Query Frame = 0
Query: 1 MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKE----------------------------------------------NELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF 186
MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKE NELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF
Sbjct: 1 MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKEVGREGGTLEKKGKQGGAVRVKSKMDGVYARGTYTQHFRGVPWILSQNELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF 232
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|301122663|ref|XP_002909058.1| (coatomer subunit zeta-1, putative [Phytophthora infestans T30-4] >gi|262099820|gb|EEY57872.1| coatomer subunit zeta-1, putative [Phytophthora infestans T30-4]) HSP 1 Score: 192.586 bits (488), Expect = 2.041e-59 Identity = 91/172 (52.91%), Postives = 132/172 (76.74%), Query Frame = 0
Query: 7 PSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
PSV AIF+LD+DG R+ AKY++ + T E++A E +++ KT+++NAR E++I+ I+N VFR G+D +VVG A ENELIL TVLD+ DA++ LL+G++DR +LDN++L++LT DE+VDGGIILE D+ +I RVLMRG+ VP+A++TISQAFASA++ F +S
Sbjct: 7 PSVKAIFILDSDGNRVCAKYYDKSYPTQKEQLALEKKLYAKTKNSNARLEADIVLIENIVSVFRCGSDTTMHVVGSASENELILLTVLDSAFDAVSNLLKGRMDRHVMLDNIELVLLTFDEVVDGGIILEVDTPSISNRVLMRGIDN--EVPMAELTISQAFASAREQFSRS 176
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|676395593|ref|XP_009041074.1| (hypothetical protein AURANDRAFT_55284 [Aureococcus anophagefferens] >gi|323448322|gb|EGB04222.1| hypothetical protein AURANDRAFT_55284 [Aureococcus anophagefferens]) HSP 1 Score: 192.586 bits (488), Expect = 3.900e-59 Identity = 94/177 (53.11%), Postives = 128/177 (72.32%), Query Frame = 0
Query: 3 DPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNN-ARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
D VPSV A+ +LD++G R+ AKY+ T EK FE ++FKKT++ N ARS++++I +DN +FR G D FYV+G A+ENE+IL VLD +A+ LLRGQ++ R+LL+NL+ +ML VDELVDGG+ILETD +I +RVLMRGV G Q P+ DM++SQA A+AKD KS
Sbjct: 8 DTLVPSVLAVLLLDSEGNRIIAKYYQGFLGTGLEKSKFEAKLFKKTKNTNTARSDADVIMLDNTIAIFRCGADTRFYVLGSAEENEIILNLVLDGLFEALNTLLRGQLESRALLENLETVMLAVDELVDGGMILETDPQSITSRVLMRGVEGTQ--PITDMSMSQAIATAKDQLFKS 182
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|675185305|ref|XP_008901537.1| (hypothetical protein PPTG_08318 [Phytophthora parasitica INRA-310] >gi|566029662|gb|ETI52573.1| hypothetical protein F443_04324 [Phytophthora parasitica P1569] >gi|567967296|gb|ETK92476.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567995740|gb|ETL45870.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568025010|gb|ETL99031.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568055438|gb|ETM52185.1| hypothetical protein L914_04144 [Phytophthora parasitica] >gi|568098799|gb|ETN13526.1| hypothetical protein PPTG_08318 [Phytophthora parasitica INRA-310] >gi|570328899|gb|ETO76847.1| hypothetical protein F444_07763 [Phytophthora parasitica P1976] >gi|570957464|gb|ETP22443.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570992909|gb|ETP50325.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970663199|gb|KUG00434.1| Coatomer subunit zeta-1 [Phytophthora nicotianae]) HSP 1 Score: 191.045 bits (484), Expect = 7.737e-59 Identity = 90/172 (52.33%), Postives = 132/172 (76.74%), Query Frame = 0
Query: 7 PSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
PSV AIF+LD+DG R+ AKY++ + T E++A E ++F KT++++AR E++I+ I+N VFR G+D +V+G A ENELIL TVLD+ DA++ LL+G++DR +LDN++L++LT DE+VDGGIILE D+ +I RVLMRG+ VP+A++TISQAFASA++ F +S
Sbjct: 7 PSVKAIFILDSDGNRVCAKYYDKSYPTQKEQLALEKKLFAKTKNSSARMEADIVLIENIVSVFRCGSDTTMHVIGSASENELILLTVLDSAFDAVSNLLKGRMDRHVMLDNIELVLLTFDEVVDGGIILEVDTPSISNRVLMRGIDN--EVPMAELTISQAFASAREQFSRS 176
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|695427064|ref|XP_009529578.1| (hypothetical protein PHYSODRAFT_354829 [Phytophthora sojae] >gi|348676011|gb|EGZ15829.1| hypothetical protein PHYSODRAFT_354829 [Phytophthora sojae]) HSP 1 Score: 187.193 bits (474), Expect = 2.577e-57 Identity = 89/172 (51.74%), Postives = 129/172 (75.00%), Query Frame = 0
Query: 7 PSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
PSV AIF+LD+DG R+ AKY++ + T E++ E +++ KT++ +R E++II I+N VFR G+D +VVG A ENELIL TVLD+ DA++ LL+G++DR +LDN++L++LT DE+VDGGIILE D+ +I RVLMRG+ VP+A++TISQAFASA++ F +S
Sbjct: 7 PSVKAIFILDSDGNRVCAKYYDKSYPTQKEQLDLEKKLYAKTKNATSRVEADIILIENIVSVFRCGSDTTMHVVGSASENELILLTVLDSAYDAVSNLLKGRMDRHVMLDNIELVLLTFDEVVDGGIILEVDTPSISNRVLMRGIDN--EVPMAELTISQAFASAREQFSRS 176
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|953499458|emb|CEG39288.1| (coatomer subunit zeta [Plasmopara halstedii]) HSP 1 Score: 184.496 bits (467), Expect = 2.443e-56 Identity = 85/172 (49.42%), Postives = 131/172 (76.16%), Query Frame = 0
Query: 7 PSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
PSV AIF+LD+DG R+ AKY++ + T E++ E +++ KT+++++RSE++II ++N V+R G+D +V+G A ENELIL TVL++ D ++ LL+G++DR +LDN++L++LT DE+VDGGIILE D+ +I RVLMRG+ VP+A++TISQAFASA++ F +S
Sbjct: 7 PSVKAIFILDSDGNRVCAKYYDKSYPTQKEQLQLEKKLYTKTKNSSSRSEADIILVENIVSVYRCGSDTTMHVIGSALENELILLTVLNSAFDTVSNLLKGRMDRHVMLDNIELVLLTFDEVVDGGIILEVDTPSISNRVLMRGIDN--EVPMAELTISQAFASAREQFSRS 176
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|1021508615|ref|XP_016197660.1| (coatomer subunit zeta-2 [Arachis ipaensis]) HSP 1 Score: 180.644 bits (457), Expect = 1.086e-54 Identity = 90/182 (49.45%), Postives = 126/182 (69.23%), Query Frame = 0
Query: 1 MSDPF---VPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSM 179
MS P+ PSV I +LD+DG+R++ KYF+ + TNA K AFE VF KT+ NAR+E+EI +N+ VV++ D HF+V G ENELILATVL AF D++ LLRG VD+R L+NLDL++L +DE+VDGGIILETD + I +V + PL++ T++QAFA+A++ F +S+
Sbjct: 1 MSAPYSEACPSVKNILLLDSDGKRVAVKYFSDDWPTNAAKEAFERVVFTKTQKTNARTEAEIAMFENYIVVYKFVQDLHFFVTGGDDENELILATVLTAFFDSVGTLLRGNVDKREALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSA--APLSEQTLTQAFATAREHFTRSL 180
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|1193763592|ref|XP_020997077.1| (LOW QUALITY PROTEIN: coatomer subunit zeta-2 [Arachis duranensis]) HSP 1 Score: 179.104 bits (453), Expect = 3.608e-54 Identity = 87/174 (50.00%), Postives = 123/174 (70.69%), Query Frame = 0
Query: 6 VPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSM 179
PSV I +LD+DG+R++ KYF+ + TNA K AFE VF KT+ NAR+E+EI ++N+ VV++ D HF+V G ENELILATVL AF D++ LLRG VD+R L+NLDL++L +DE+VDGGIILETD + I +V + PL++ T++QAFA+A++ F +S+
Sbjct: 9 CPSVKNILLLDSDGKRVAVKYFSDDWPTNAAKEAFERVVFTKTQKTNARTEAEIAMLENYIVVYKFVQDLHFFVTGGDDENELILATVLTAFFDSVGTLLRGNVDKREALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSA--APLSEQTLTQAFATAREHFTRSL 180
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|116780978|gb|ABK21909.1| (unknown [Picea sitchensis] >gi|116793727|gb|ABK26858.1| unknown [Picea sitchensis]) HSP 1 Score: 178.718 bits (452), Expect = 5.086e-54 Identity = 87/174 (50.00%), Postives = 124/174 (71.26%), Query Frame = 0
Query: 6 VPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSM 179
P + I +LD++G+R++ KY++ + T A K+AFE VF KT+ NAR+E+EI D+F VV++ +D HFYV G ENELILATVL F DA+A+LLR V++R+ L+NLDL++L +DE+VDGGIILET+ S I +V+ G GG PL++ TISQA ASA++ +S+
Sbjct: 4 CPLIKNILLLDSEGKRVAVKYYSDDWPTLASKLAFEKSVFTKTQKTNARAEAEIGMFDSFVVVYKFISDLHFYVTGGDDENELILATVLQGFFDAVALLLRSNVEKRTALENLDLILLCLDEIVDGGIILETEPSLIAGKVVTHGADGG-GAPLSEQTISQALASAREHLARSL 176 The following BLAST results are available for this feature:
BLAST of EWM22756.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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