EWM22756.1, cds7916 (CDS) Nannochloropsis gaditana

Overview
NameEWM22756.1
Unique Namecds7916
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:158132..158140 +
Alignment locationKK037247.1:158280..158381 +
Alignment locationKK037247.1:158644..158701 +
Alignment locationKK037247.1:159020..159105 +
Alignment locationKK037247.1:159244..159305 +
Alignment locationKK037247.1:159446..159571 +
Alignment locationKK037247.1:159743..159860 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22756.1
ProductAP complex, mu/sigma subunit
Orig transcript idgnl|cribi|Naga_100516g3.10604.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:158132..158140 +
KK037247.1supercontigKK037247.1:158280..158381 +
KK037247.1supercontigKK037247.1:158644..158701 +
KK037247.1supercontigKK037247.1:159020..159105 +
KK037247.1supercontigKK037247.1:159244..159305 +
KK037247.1supercontigKK037247.1:159446..159571 +
KK037247.1supercontigKK037247.1:159743..159860 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR022775AP_mu_sigma_su
Homology
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|585103356|gb|EWM22756.1| (AP complex, mu/sigma subunit [Nannochloropsis gaditana])

HSP 1 Score: 375.17 bits (962), Expect = 1.314e-131
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query:    1 MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF 186
            MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF
Sbjct:    1 MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF 186          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|553190319|ref|XP_005855166.1| (nonclathrin coat protein zeta2-cop [Nannochloropsis gaditana CCMP526] >gi|422293890|gb|EKU21190.1| nonclathrin coat protein zeta2-cop [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 353.984 bits (907), Expect = 1.934e-122
Identity = 186/232 (80.17%), Postives = 186/232 (80.17%), Query Frame = 0
Query:    1 MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKE----------------------------------------------NELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF 186
            MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKE                                              NELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF
Sbjct:    1 MSDPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKEVGREGGTLEKKGKQGGAVRVKSKMDGVYARGTYTQHFRGVPWILSQNELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSMGNREGNF 232          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|301122663|ref|XP_002909058.1| (coatomer subunit zeta-1, putative [Phytophthora infestans T30-4] >gi|262099820|gb|EEY57872.1| coatomer subunit zeta-1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 192.586 bits (488), Expect = 2.041e-59
Identity = 91/172 (52.91%), Postives = 132/172 (76.74%), Query Frame = 0
Query:    7 PSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
            PSV AIF+LD+DG R+ AKY++  + T  E++A E +++ KT+++NAR E++I+ I+N   VFR G+D   +VVG A ENELIL TVLD+  DA++ LL+G++DR  +LDN++L++LT DE+VDGGIILE D+ +I  RVLMRG+     VP+A++TISQAFASA++ F +S
Sbjct:    7 PSVKAIFILDSDGNRVCAKYYDKSYPTQKEQLALEKKLYAKTKNSNARLEADIVLIENIVSVFRCGSDTTMHVVGSASENELILLTVLDSAFDAVSNLLKGRMDRHVMLDNIELVLLTFDEVVDGGIILEVDTPSISNRVLMRGIDN--EVPMAELTISQAFASAREQFSRS 176          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|676395593|ref|XP_009041074.1| (hypothetical protein AURANDRAFT_55284 [Aureococcus anophagefferens] >gi|323448322|gb|EGB04222.1| hypothetical protein AURANDRAFT_55284 [Aureococcus anophagefferens])

HSP 1 Score: 192.586 bits (488), Expect = 3.900e-59
Identity = 94/177 (53.11%), Postives = 128/177 (72.32%), Query Frame = 0
Query:    3 DPFVPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNN-ARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
            D  VPSV A+ +LD++G R+ AKY+     T  EK  FE ++FKKT++ N ARS++++I +DN   +FR G D  FYV+G A+ENE+IL  VLD   +A+  LLRGQ++ R+LL+NL+ +ML VDELVDGG+ILETD  +I +RVLMRGV G Q  P+ DM++SQA A+AKD   KS
Sbjct:    8 DTLVPSVLAVLLLDSEGNRIIAKYYQGFLGTGLEKSKFEAKLFKKTKNTNTARSDADVIMLDNTIAIFRCGADTRFYVLGSAEENEIILNLVLDGLFEALNTLLRGQLESRALLENLETVMLAVDELVDGGMILETDPQSITSRVLMRGVEGTQ--PITDMSMSQAIATAKDQLFKS 182          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|675185305|ref|XP_008901537.1| (hypothetical protein PPTG_08318 [Phytophthora parasitica INRA-310] >gi|566029662|gb|ETI52573.1| hypothetical protein F443_04324 [Phytophthora parasitica P1569] >gi|567967296|gb|ETK92476.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567995740|gb|ETL45870.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568025010|gb|ETL99031.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568055438|gb|ETM52185.1| hypothetical protein L914_04144 [Phytophthora parasitica] >gi|568098799|gb|ETN13526.1| hypothetical protein PPTG_08318 [Phytophthora parasitica INRA-310] >gi|570328899|gb|ETO76847.1| hypothetical protein F444_07763 [Phytophthora parasitica P1976] >gi|570957464|gb|ETP22443.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570992909|gb|ETP50325.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970663199|gb|KUG00434.1| Coatomer subunit zeta-1 [Phytophthora nicotianae])

HSP 1 Score: 191.045 bits (484), Expect = 7.737e-59
Identity = 90/172 (52.33%), Postives = 132/172 (76.74%), Query Frame = 0
Query:    7 PSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
            PSV AIF+LD+DG R+ AKY++  + T  E++A E ++F KT++++AR E++I+ I+N   VFR G+D   +V+G A ENELIL TVLD+  DA++ LL+G++DR  +LDN++L++LT DE+VDGGIILE D+ +I  RVLMRG+     VP+A++TISQAFASA++ F +S
Sbjct:    7 PSVKAIFILDSDGNRVCAKYYDKSYPTQKEQLALEKKLFAKTKNSSARMEADIVLIENIVSVFRCGSDTTMHVIGSASENELILLTVLDSAFDAVSNLLKGRMDRHVMLDNIELVLLTFDEVVDGGIILEVDTPSISNRVLMRGIDN--EVPMAELTISQAFASAREQFSRS 176          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|695427064|ref|XP_009529578.1| (hypothetical protein PHYSODRAFT_354829 [Phytophthora sojae] >gi|348676011|gb|EGZ15829.1| hypothetical protein PHYSODRAFT_354829 [Phytophthora sojae])

HSP 1 Score: 187.193 bits (474), Expect = 2.577e-57
Identity = 89/172 (51.74%), Postives = 129/172 (75.00%), Query Frame = 0
Query:    7 PSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
            PSV AIF+LD+DG R+ AKY++  + T  E++  E +++ KT++  +R E++II I+N   VFR G+D   +VVG A ENELIL TVLD+  DA++ LL+G++DR  +LDN++L++LT DE+VDGGIILE D+ +I  RVLMRG+     VP+A++TISQAFASA++ F +S
Sbjct:    7 PSVKAIFILDSDGNRVCAKYYDKSYPTQKEQLDLEKKLYAKTKNATSRVEADIILIENIVSVFRCGSDTTMHVVGSASENELILLTVLDSAYDAVSNLLKGRMDRHVMLDNIELVLLTFDEVVDGGIILEVDTPSISNRVLMRGIDN--EVPMAELTISQAFASAREQFSRS 176          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|953499458|emb|CEG39288.1| (coatomer subunit zeta [Plasmopara halstedii])

HSP 1 Score: 184.496 bits (467), Expect = 2.443e-56
Identity = 85/172 (49.42%), Postives = 131/172 (76.16%), Query Frame = 0
Query:    7 PSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKS 178
            PSV AIF+LD+DG R+ AKY++  + T  E++  E +++ KT+++++RSE++II ++N   V+R G+D   +V+G A ENELIL TVL++  D ++ LL+G++DR  +LDN++L++LT DE+VDGGIILE D+ +I  RVLMRG+     VP+A++TISQAFASA++ F +S
Sbjct:    7 PSVKAIFILDSDGNRVCAKYYDKSYPTQKEQLQLEKKLYTKTKNSSSRSEADIILVENIVSVYRCGSDTTMHVIGSALENELILLTVLNSAFDTVSNLLKGRMDRHVMLDNIELVLLTFDEVVDGGIILEVDTPSISNRVLMRGIDN--EVPMAELTISQAFASAREQFSRS 176          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|1021508615|ref|XP_016197660.1| (coatomer subunit zeta-2 [Arachis ipaensis])

HSP 1 Score: 180.644 bits (457), Expect = 1.086e-54
Identity = 90/182 (49.45%), Postives = 126/182 (69.23%), Query Frame = 0
Query:    1 MSDPF---VPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSM 179
            MS P+    PSV  I +LD+DG+R++ KYF+  + TNA K AFE  VF KT+  NAR+E+EI   +N+ VV++   D HF+V G   ENELILATVL AF D++  LLRG VD+R  L+NLDL++L +DE+VDGGIILETD + I  +V    +      PL++ T++QAFA+A++ F +S+
Sbjct:    1 MSAPYSEACPSVKNILLLDSDGKRVAVKYFSDDWPTNAAKEAFERVVFTKTQKTNARTEAEIAMFENYIVVYKFVQDLHFFVTGGDDENELILATVLTAFFDSVGTLLRGNVDKREALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSA--APLSEQTLTQAFATAREHFTRSL 180          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|1193763592|ref|XP_020997077.1| (LOW QUALITY PROTEIN: coatomer subunit zeta-2 [Arachis duranensis])

HSP 1 Score: 179.104 bits (453), Expect = 3.608e-54
Identity = 87/174 (50.00%), Postives = 123/174 (70.69%), Query Frame = 0
Query:    6 VPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSM 179
             PSV  I +LD+DG+R++ KYF+  + TNA K AFE  VF KT+  NAR+E+EI  ++N+ VV++   D HF+V G   ENELILATVL AF D++  LLRG VD+R  L+NLDL++L +DE+VDGGIILETD + I  +V    +      PL++ T++QAFA+A++ F +S+
Sbjct:    9 CPSVKNILLLDSDGKRVAVKYFSDDWPTNAAKEAFERVVFTKTQKTNARTEAEIAMLENYIVVYKFVQDLHFFVTGGDDENELILATVLTAFFDSVGTLLRGNVDKREALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSA--APLSEQTLTQAFATAREHFTRSL 180          
BLAST of EWM22756.1 vs. NCBI_GenBank
Match: gi|116780978|gb|ABK21909.1| (unknown [Picea sitchensis] >gi|116793727|gb|ABK26858.1| unknown [Picea sitchensis])

HSP 1 Score: 178.718 bits (452), Expect = 5.086e-54
Identity = 87/174 (50.00%), Postives = 124/174 (71.26%), Query Frame = 0
Query:    6 VPSVTAIFVLDNDGQRLSAKYFNPIFATNAEKMAFEMRVFKKTRHNNARSESEIITIDNFTVVFRSGTDAHFYVVGDAKENELILATVLDAFRDAIAMLLRGQVDRRSLLDNLDLLMLTVDELVDGGIILETDSSAIVARVLMRGVSGGQNVPLADMTISQAFASAKDSFIKSM 179
             P +  I +LD++G+R++ KY++  + T A K+AFE  VF KT+  NAR+E+EI   D+F VV++  +D HFYV G   ENELILATVL  F DA+A+LLR  V++R+ L+NLDL++L +DE+VDGGIILET+ S I  +V+  G  GG   PL++ TISQA ASA++   +S+
Sbjct:    4 CPLIKNILLLDSEGKRVAVKYYSDDWPTLASKLAFEKSVFTKTQKTNARAEAEIGMFDSFVVVYKFISDLHFYVTGGDDENELILATVLQGFFDAVALLLRSNVEKRTALENLDLILLCLDEIVDGGIILETEPSLIAGKVVTHGADGG-GAPLSEQTISQALASAREHLARSL 176          
The following BLAST results are available for this feature:
BLAST of EWM22756.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103356|gb|EWM22756.1|1.314e-131100.00AP complex, mu/sigma subunit [Nannochloropsis gadi... [more]
gi|553190319|ref|XP_005855166.1|1.934e-12280.17nonclathrin coat protein zeta2-cop [Nannochloropsi... [more]
gi|301122663|ref|XP_002909058.1|2.041e-5952.91coatomer subunit zeta-1, putative [Phytophthora in... [more]
gi|676395593|ref|XP_009041074.1|3.900e-5953.11hypothetical protein AURANDRAFT_55284 [Aureococcus... [more]
gi|675185305|ref|XP_008901537.1|7.737e-5952.33hypothetical protein PPTG_08318 [Phytophthora para... [more]
gi|695427064|ref|XP_009529578.1|2.577e-5751.74hypothetical protein PHYSODRAFT_354829 [Phytophtho... [more]
gi|953499458|emb|CEG39288.1|2.443e-5649.42coatomer subunit zeta [Plasmopara halstedii][more]
gi|1021508615|ref|XP_016197660.1|1.086e-5449.45coatomer subunit zeta-2 [Arachis ipaensis][more]
gi|1193763592|ref|XP_020997077.1|3.608e-5450.00LOW QUALITY PROTEIN: coatomer subunit zeta-2 [Arac... [more]
gi|116780978|gb|ABK21909.1|5.086e-5450.00unknown [Picea sitchensis] >gi|116793727|gb|ABK268... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7938rna7938Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications