rna7937, rna7937 (mRNA) Nannochloropsis gaditana

Overview
Namerna7937
Unique Namerna7937
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length892
Alignment locationKK037247.1:156528..157589 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100516g2.10606.mrna
Orig protein idgnl|cribi|Naga_100516g2.10606
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:156528..157589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100516g2gene7687Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7937rna7937-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22758.1cds7915Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7937 ID=rna7937|Name=rna7937|organism=Nannochloropsis gaditana|type=mRNA|length=892bp
TACCAGAAGCAGAAATACTGACAGCCTTACGTGCACAATCTACTCAAAAG
TCTCAAGAAATTAGGTCTTTATACGGAGGAAATAAAAACGAAACCAGTCA
CATGTACGACGCGAAGAGGGCGGTGCAAAACGCAAAAACCCAACTTCTCA
AGGTACATTTTGCAGAATAAAGAGCCATACAAGGGAGCCATGCCGACACC
TTTAGAGCTAATTCCATCGACGACCAGTCCTGAACCAAGCCCTACCTCAA
AAGCCTCCCTGCAGCCTCAATTGTATCAACCCTCGCGGGCAGCAGTCGCA
CGAATGCACGCCTTAGAACTGGAGGGGCGCCTGGAGGCTTGTTTTACCTA
CTGTGAGTGTGGTTGTCGCGTCTTGAAAAGGCTGGTCTCCTACATGGTTA
GCATCGCGATATTCATTTTTACTAGCCTCGTCATTCGTCTGGGATTGCTT
ATCGTGGCTGGAGTCGCTCTGTATTATTCTTTTTTGCTCAGCCTCGGGAA
GATCTCCGGCGTAAAGGATCCAAAGCTTCAAGATTACTTCTCATATTCTT
CGTTCAAAAACTACTGGGGGTGGACTTAAGAAAGACAAATAATGGCCACT
TACAGCCGTTAAAAAAAAAGAAAAGAGAAGAACATTGTATCTGTAAAATG
GAAAAAATCGAACTCGCACGTACTTCCACCCTTTTTCATACTCTAAAAGC
AATGATTGTTTGGAAAATGAGATAAGGTCGCTGCATTTTTTCAGAGTGCT
GTAGCTGTGACTTTGTCCAGTAGGAAATAGATACATTGATCGCAGCATGT
TCATACCTTCCTCGATGAATCAAATCAGGAAAATACATAAAACGTATTCA
TGATAGATCCAACGGTATAAAGCAAAGATTGTTATCCTTTGT
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protein sequence of rna7937

>rna7937-protein ID=rna7937-protein|Name=rna7937|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEA
CFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLL
SLGKISGVKDPKLQGGREVSDGWSKEMMARSPDFYLVVLVMITSLF
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mRNA from alignment at KK037247.1:156528..157589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7937 ID=rna7937|Name=rna7937|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp|location=Sequence derived from alignment at KK037247.1:156528..157589+ (Nannochloropsis gaditana)
ACAGCTCAATCCACGGTAAACTTTACACAGCAGAATAAAGAGCCATACAA
GGGAGCCATGCCGACACCTTTAGAGCTAATTCCATCGACGACCAGTCCTG
AACCAAGCCCTACCTCAAAAGCCTCCCTGCAGCCTCAATTGTATCAACCC
TCGCGGGCAGCAGTCGCACGAATGCACGCCTTAGAACTGGAGGGGCGCCT
GGAGGCTTGTTTTACCTACTGTGAGTGTGGTTGTCGCGTCTTGAAAAGGC
TGGTCTCCTACATGGTTAGCATCGCGATATTCATTTTTACTAGCCTCGTC
ATTCGTCTGGGATTGCTTATCGTGGCTGGAGTCGCTCTGTATTATTCTTT
TTTGGTAGGTGAGAGACAATAGGTGCCAAAAACCAATAGACAGGAAACGA
AGTGTCATCGCCTTACATTAATTTTATTCAAACACAATACAGCTCAGCCT
CGGGAAGATCTCCGGCGTAAAGGATCCAAAGCttcaaggtgggagggagg
tttcAGACGGATGGAGTAAGGAAATGATGGCAAGGAGCCCTGATTTCTAT
TTAGTAGTCTTGGTGATGATTACGTCATTATTTTAGGCGCATGTGTGGGT
CTACATATTTCTTGGGTACATCAATAAGAAAGGGAGATGATACACGCACT
CGTTTATGGTCTGACTTCACTACACCATCACGTTCTGCCCAACTTTGCAC
AGATTACTTCTCATATTCTTCGTTCAAAAACTACTGGGGGTGGACTTAAG
AAAGACAAATAATGGCCACTTACAGCCgttaaaaaaaaagaaaagagaag
aacaTTGTATCTGTAAAATGGAAAAAATCGAACTCGCACGTACTTCCACC
CTTTTTCATACTCTAAAAGCAATGATTGTTTGGAAAATGAGATAAGGTCG
CTGCATTTTTTCAGAGTGCTGTAGCTGTGACTTTGTCCAGTAGGAAATAG
ATACATTGATCGCAGCATGTTCATACCTTCCTCGATGAATCAAATCAGGA
AAATACATAAAACGTATTCATGATAGATCCAACGGTATAAAGCAAAGATT
GTTATCCTTTGT
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Coding sequence (CDS) from alignment at KK037247.1:156528..157589+

>rna7937 ID=rna7937|Name=rna7937|organism=Nannochloropsis gaditana|type=CDS|length=882bp|location=Sequence derived from alignment at KK037247.1:156528..157589+ (Nannochloropsis gaditana)
ATGCCGACACCTTTAGAGCTAATTCCATCGACGACCAGTCCTGAACCAAG
CCCTACCTCAAAAGCCTCCCTGCAGCCTCAATTGTATCAACCCTCGCGGG
CAGCAGTCGCACGAATGCACGCCTTAGAACTGGAGGGGCGCCTGGAGGCT
TGTTTTACCTACTGTGAGTGTGGTTGTCGCGTCTTGAAAAGGCTGGTCTC
CTACATGGTTAGCATCGCGATATTCATTTTTACTAGCCTCGTCATTCGTC
TGGGATTGCTTATCGTGGCTGGAGTCGCTCTGTATTATTCTTTTTTGCTC
AGCCTCGGGAAGATCTCCGGCGTAAAGGATCCAAAGCttcaaggtgggag
ggaggtttcAGACGGATGGAGTAAGGAAATGATGGCAAGGAGCCCTGATT
TCTATTTAGTAGTCTTGGTGATGATTACGTCATTATTTTAGATGCCGACA
CCTTTAGAGCTAATTCCATCGACGACCAGTCCTGAACCAAGCCCTACCTC
AAAAGCCTCCCTGCAGCCTCAATTGTATCAACCCTCGCGGGCAGCAGTCG
CACGAATGCACGCCTTAGAACTGGAGGGGCGCCTGGAGGCTTGTTTTACC
TACTGTGAGTGTGGTTGTCGCGTCTTGAAAAGGCTGGTCTCCTACATGGT
TAGCATCGCGATATTCATTTTTACTAGCCTCGTCATTCGTCTGGGATTGC
TTATCGTGGCTGGAGTCGCTCTGTATTATTCTTTTTTGCTCAGCCTCGGG
AAGATCTCCGGCGTAAAGGATCCAAAGCttcaaggtgggagggaggtttc
AGACGGATGGAGTAAGGAAATGATGGCAAGGAGCCCTGATTTCTATTTAG
TAGTCTTGGTGATGATTACGTCATTATTTTAG
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Synonyms
Publications