EWM22758.1, cds7915 (CDS) Nannochloropsis gaditana

Overview
NameEWM22758.1
Unique Namecds7915
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:156585..156881 +
Alignment locationKK037247.1:156970..157113 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22758.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100516g2.10606.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:156585..156881 +
KK037247.1supercontigKK037247.1:156970..157113 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM22758.1 vs. NCBI_GenBank
Match: gi|585103358|gb|EWM22758.1| (hypothetical protein Naga_100516g2 [Nannochloropsis gaditana])

HSP 1 Score: 295.049 bits (754), Expect = 3.842e-101
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 
Query:    1 MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQGGREVSDGWSKEMMARSPDFYLVVLVMITSLF 146
            MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQGGREVSDGWSKEMMARSPDFYLVVLVMITSLF
Sbjct:    1 MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQGGREVSDGWSKEMMARSPDFYLVVLVMITSLF 146
[Close]
BLAST of EWM22758.1 vs. NCBI_GenBank
Match: gi|585103357|gb|EWM22757.1| (hypothetical protein Naga_100516g2 [Nannochloropsis gaditana])

HSP 1 Score: 228.794 bits (582), Expect = 4.047e-75
Identity = 117/129 (90.70%), Postives = 118/129 (91.47%), Query Frame = 0 
Query:    1 MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQGGREVSD-----GWS 124
            MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQ     S      GW+
Sbjct:    1 MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQDYFSYSSFKNYWGWT 129
The following BLAST results are available for this feature:
BLAST of EWM22758.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103358|gb|EWM22758.1|3.842e-101100.00hypothetical protein Naga_100516g2 [Nannochloropsi... [more]
gi|585103357|gb|EWM22757.1|4.047e-7590.70hypothetical protein Naga_100516g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7937rna7937Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications