rna7936, rna7936 (mRNA) Nannochloropsis gaditana

Overview
Namerna7936
Unique Namerna7936
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length411
Alignment locationKK037247.1:155588..157589 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100516g2.10605.mrna
Orig protein idgnl|cribi|Naga_100516g2.10605
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:155588..157589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100516g2gene7687Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7936rna7936-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22757.1cds7914Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7936 ID=rna7936|Name=rna7936|organism=Nannochloropsis gaditana|type=mRNA|length=411bp
ATGTCGAAAATATTTCCATTTCTGACAAGAACACGAAGAGGTCTCATTCC
GGCACGCCCTCCCACCAGCATCAAGCGCGAAAGCAAAAACAGCGGCTGCT
TTCAATCTTTTCTTTCATACCCATTTTTACAACAACCACATCATCATACC
GTCCATAATGAGGCTCCGGATGGCGCTCCTATCGACCCCAAGCTCATGCG
AATTCAAAGAACCACCAGCCCAAGACCCAAGGTACCGCAGAAGGAGCTAG
TGTTTGGAAAGGTCTTTAGTGACCACATGTTGGAAATCGACTGGGATTAC
AAGAACGGCTGGCATCCTCCGGTCATCAGCGCCTACCACCCTTTGTCCCT
CTCCCCCGCTGCTTCGGTCTTGCACTACGCCCTGGAATGTTTCGAAGGGA
TGAAGGCTTGA
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protein sequence of rna7936

>rna7936-protein ID=rna7936-protein|Name=rna7936|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEA
CFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLL
SLGKISGVKDPKLQDYFSYSSFKNYWGWT
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mRNA from alignment at KK037247.1:155588..157589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7936 ID=rna7936|Name=rna7936|organism=Nannochloropsis gaditana|type=mRNA|length=2002bp|location=Sequence derived from alignment at KK037247.1:155588..157589+ (Nannochloropsis gaditana)
TACCAGAAGCAGAAATACTGACAGCCTTACGTGCACAATCTACTCAAAAG
TCTCAAGAAATTAGGTCTTTATACGGAGGAAATAAAAACGAAACCAGTCA
CATGTACGACGCGAAGAGGGCGGTGCAAAACGCAAAAACCCAACTTCTCA
AGGTACATTTTGGTAAGAATGAGCCAAAGAAAGCCAAAGACAATGTAAAC
GAGACTAAGCACCCGTGTCTTTCATATTTTTTTGCCCAAGGAGGGGTTTA
AAATTTTTGAAGAAATGCTTATAGACTGCTTTATGAGAGCTCGAGGGCAA
GCGACTGGcaactcctcccttcttgaaCTGGTCCAAGCACGTTACGAGAG
ACCCTCGCAAGCCTATATCTCCGAGCCGTAGTCAACTTTCGCACGTTGCT
TTTGTCTATCTCCTCAAATTATTATATTGAGGATACCCCTTTCTTTCCGT
GTCAGGCATTTGTCACGCCAGTGGTCCAGATCTGGAGCCTTGGCGCAGGC
ACATGCATGCATGGGCCGGGAAGCTTCCAAGCGATGAGCGACGTAACGCC
TCAACCGCTAGATTTGTATTCGTATACCTAAAGCTATCCATTAACTTTAA
AGCCAGCTTGACGTATAAACATCCTGGCAGAGAATACATACAAGAAACCT
AATTTCAATCTTTGATCTTCATTTGGTCGTAAGATCGCATTCTTAGTCAC
TGATCCGATCTTCCCATGAACGGATGAACAAATATGTCGTCGTGGTATTT
TGATTCGCAAAGTTGTTTTATCGTGCGCTTGAGAGGAGACCACATTGTCG
ACTTTGATTAGGCTTAATTATTTGCAGAGACCAGTCCCAATCATTGCACT
GAGtgcgggagggaatgggTACAGTTTTTCTGCAAAAATCAAGTAGAGCT
CGCGTAATGTGTGGAATAACACCGACAAATGATAGTATAAACAGCTCAAT
CCACGGTAAACTTTACACAGCAGAATAAAGAGCCATACAAGGGAGCCATG
CCGACACCTTTAGAGCTAATTCCATCGACGACCAGTCCTGAACCAAGCCC
TACCTCAAAAGCCTCCCTGCAGCCTCAATTGTATCAACCCTCGCGGGCAG
CAGTCGCACGAATGCACGCCTTAGAACTGGAGGGGCGCCTGGAGGCTTGT
TTTACCTACTGTGAGTGTGGTTGTCGCGTCTTGAAAAGGCTGGTCTCCTA
CATGGTTAGCATCGCGATATTCATTTTTACTAGCCTCGTCATTCGTCTGG
GATTGCTTATCGTGGCTGGAGTCGCTCTGTATTATTCTTTTTTGGTAGGT
GAGAGACAATAGGTGCCAAAAACCAATAGACAGGAAACGAAGTGTCATCG
CCTTACATTAATTTTATTCAAACACAATACAGCTCAGCCTCGGGAAGATC
TCCGGCGTAAAGGATCCAAAGCttcaaggtgggagggaggtttcAGACGG
ATGGAGTAAGGAAATGATGGCAAGGAGCCCTGATTTCTATTTAGTAGTCT
TGGTGATGATTACGTCATTATTTTAGGCGCATGTGTGGGTCTACATATTT
CTTGGGTACATCAATAAGAAAGGGAGATGATACACGCACTCGTTTATGGT
CTGACTTCACTACACCATCACGTTCTGCCCAACTTTGCACAGATTACTTC
TCATATTCTTCGTTCAAAAACTACTGGGGGTGGACTTAAGAAAGACAAAT
AATGGCCACTTACAGCCgttaaaaaaaaagaaaagagaagaacaTTGTAT
CTGTAAAATGGAAAAAATCGAACTCGCACGTACTTCCACCCTTTTTCATA
CTCTAAAAGCAATGATTGTTTGGAAAATGAGATAAGGTCGCTGCATTTTT
TCAGAGTGCTGTAGCTGTGACTTTGTCCAGTAGGAAATAGATACATTGAT
CGCAGCATGTTCATACCTTCCTCGATGAATCAAATCAGGAAAATACATAA
AACGTATTCATGATAGATCCAACGGTATAAAGCAAAGATTGTTATCCTTT
GT
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Coding sequence (CDS) from alignment at KK037247.1:155588..157589+

>rna7936 ID=rna7936|Name=rna7936|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at KK037247.1:155588..157589+ (Nannochloropsis gaditana)
ATGCCGACACCTTTAGAGCTAATTCCATCGACGACCAGTCCTGAACCAAG
CCCTACCTCAAAAGCCTCCCTGCAGCCTCAATTGTATCAACCCTCGCGGG
CAGCAGTCGCACGAATGCACGCCTTAGAACTGGAGGGGCGCCTGGAGGCT
TGTTTTACCTACTGTGAGTGTGGTTGTCGCGTCTTGAAAAGGCTGGTCTC
CTACATGGTTAGCATCGCGATATTCATTTTTACTAGCCTCGTCATTCGTC
TGGGATTGCTTATCGTGGCTGGAGTCGCTCTGTATTATTCTTTTTTGCTC
AGCCTCGGGAAGATCTCCGGCGTAAAGGATCCAAAGCttcaagATTACTT
CTCATATTCTTCGTTCAAAAACTACTGGGGGTGGACTTAAATGCCGACAC
CTTTAGAGCTAATTCCATCGACGACCAGTCCTGAACCAAGCCCTACCTCA
AAAGCCTCCCTGCAGCCTCAATTGTATCAACCCTCGCGGGCAGCAGTCGC
ACGAATGCACGCCTTAGAACTGGAGGGGCGCCTGGAGGCTTGTTTTACCT
ACTGTGAGTGTGGTTGTCGCGTCTTGAAAAGGCTGGTCTCCTACATGGTT
AGCATCGCGATATTCATTTTTACTAGCCTCGTCATTCGTCTGGGATTGCT
TATCGTGGCTGGAGTCGCTCTGTATTATTCTTTTTTGCTCAGCCTCGGGA
AGATCTCCGGCGTAAAGGATCCAAAGCttcaagATTACTTCTCATATTCT
TCGTTCAAAAACTACTGGGGGTGGACTTAAATGCCGACACCTTTAGAGCT
AATTCCATCGACGACCAGTCCTGAACCAAGCCCTACCTCAAAAGCCTCCC
TGCAGCCTCAATTGTATCAACCCTCGCGGGCAGCAGTCGCACGAATGCAC
GCCTTAGAACTGGAGGGGCGCCTGGAGGCTTGTTTTACCTACTGTGAGTG
TGGTTGTCGCGTCTTGAAAAGGCTGGTCTCCTACATGGTTAGCATCGCGA
TATTCATTTTTACTAGCCTCGTCATTCGTCTGGGATTGCTTATCGTGGCT
GGAGTCGCTCTGTATTATTCTTTTTTGCTCAGCCTCGGGAAGATCTCCGG
CGTAAAGGATCCAAAGCttcaagATTACTTCTCATATTCTTCGTTCAAAA
ACTACTGGGGGTGGACTTAA
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Synonyms
Publications