EWM22757.1, cds7914 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22757.1
Unique Name	cds7914
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037247.1:156585..156881 +
Alignment location	KK037247.1:156970..157015 +
Alignment location	KK037247.1:157230..157276 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22757.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100516g2.10605.mrna
Gbkey	CDS
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:156585..156881 +
KK037247.1	supercontig	KK037247.1:156970..157015 +
KK037247.1	supercontig	KK037247.1:157230..157276 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

[Close]

BLAST of EWM22757.1 vs. NCBI_GenBank
Match: gi|585103357|gb|EWM22757.1| (hypothetical protein Naga_100516g2 [Nannochloropsis gaditana])

HSP 1 Score: 263.848 bits (673), Expect = 2.867e-89
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query:    1 MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQDYFSYSSFKNYWGWT 129
            MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQDYFSYSSFKNYWGWT
Sbjct:    1 MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQDYFSYSSFKNYWGWT 129

[Close]

BLAST of EWM22757.1 vs. NCBI_GenBank
Match: gi|585103358|gb|EWM22758.1| (hypothetical protein Naga_100516g2 [Nannochloropsis gaditana])

HSP 1 Score: 228.794 bits (582), Expect = 3.576e-75
Identity = 117/129 (90.70%), Postives = 118/129 (91.47%), Query Frame = 0

Query:    1 MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQDYFSYSSFKNYWGWT 129
            MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQ     S      GW+
Sbjct:    1 MPTPLELIPSTTSPEPSPTSKASLQPQLYQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQGGREVSD-----GWS 124

The following BLAST results are available for this feature:

BLAST of EWM22757.1 vs. NCBI_GenBank

BLAST of EWM22757.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585103357\|gb\|EWM22757.1\|	2.867e-89	100.00	hypothetical protein Naga_100516g2 [Nannochloropsi...	[more]
gi\|585103358\|gb\|EWM22758.1\|	3.576e-75	90.70	hypothetical protein Naga_100516g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7936	rna7936	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications