rna7935, rna7935 (mRNA) Nannochloropsis gaditana

Overview
Namerna7935
Unique Namerna7935
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1290
Alignment locationKK037247.1:153811..154641 -

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Properties
Property NameValue
Productbranched-chain-amino-acid aminotransferase
Orig transcript idgnl|cribi|Naga_100516g1.10608.mrna
Orig protein idgnl|cribi|Naga_100516g1.10608
GenebcaA
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:153811..154641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
bcaAgene7686Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7935rna7935-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22760.1cds7913Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7935 ID=rna7935|Name=rna7935|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp
ATGTCCATATTTGCATCTCAGCCATTTCATGCCTCTGCTAGCGCCAAAAA
AGGACATGGACGGCGACGCACTTGCAGCAATGCGTCTCACACGGTCCTGA
GTGGCAGCGTGTTTTTAGTTTTACTACTTGTGTTCTTGATCGCAGCTGCG
GCAGGGGATGGTGGGCAAGGCCTGTCTTGGGTCTGTCGAAAAAATCCTCC
GTTGGAAGGAGGCCGGGAGCGAATAAAAAATATCGTCACAGGTCCTCGCA
CGTGCATAAGTATGTATCAATGTAACGGGCGCTCGGCATTCCTATCATCG
CTCTCCTACTCTTTCGTCGGCTCCCTCTGTGGAAAGAGGAACATGCCACC
GCGGACAGCATCTCACCGGGCGAGTTTCCCTCATTGCGGGAGGTCTATTT
CGAGGTCCATTCCCATGCGGCTCAATCGTCTCCTATTCGAGGCAGAAGAA
ATTAATCTGACCTCGAGAAATCCGCAGGACGGACGAGGAGAAAGGGAGGA
ATCAGTCATTGTCAGGTTAGGGCAAGACGATGCCCGGGCGCAGCATGTTC
GGAAGGTAGGTGTCGACGTCCTCCTCGCCATGCAAGCCCCCTTGAGGATG
GAACGTATCATTCCCCACATGGTCGCCCTGGGGGTTGGTCGGCTGCTGAT
CACGTCCGCGAAGAAGGTGGAGAAGAGCTACTGGGGCTCCCATTTGTTGC
GAGAACCGCAAGCGCTGCGAGAACTCGTGGTAGAAGGCCTCAGCCAGGCC
GGCGACACCATCGTCCCCGATATCATCATCGATCGGCGTCTCAAGCGCTT
CCTAAGCGATAAGCTGGAAGTCCTGTACCCTTCCTCCCCCTCTCCCTCCG
CCTCCTCCTCCTTCCAACACACGCTCCGTGTCCTCTCCCACCCTTTTCGA
GCCCTGCATGACTCTGAGGGCGTGGATACGCGTTTTCGTCAGCTCTCTTG
GCCGTCTCCAGTCCCAAAGAATGGACTTAAAGGCGAAACAGCAGTGGGAC
AACCGCGGCTCCTTTTGGCGATAGGACCCGAATCAGGATGGGAGGAACCC
TATGAGCTGGAGCTCTTCCGAGAGCATGGTTTTCAGCAAATCACGCTTGG
ACCCAGAGTTTTGCGGACAGAGACTGCCGTCCCTGCTTTACTGGCCTTGG
CACACGATCATTTGCATGCCCTGGACGAGCAATGGGAACAGAGTATAGGG
CGCATCGCCAGTCCTCAAGACGACAGCGGCGCTGCTCTTGAAGGGAGCCG
TAGTGATATTCGCGATAAAAACGATAAGTCACTACAATGA
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protein sequence of rna7935

>rna7935-protein ID=rna7935-protein|Name=rna7935|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MSKIFPFLTRTRRGLIPARPPTSIKRESKNSGCFQSFLSYPFLQQPHHHT
VHNEAPDGAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDY
KNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA
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mRNA from alignment at KK037247.1:153811..154641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7935 ID=rna7935|Name=rna7935|organism=Nannochloropsis gaditana|type=mRNA|length=831bp|location=Sequence derived from alignment at KK037247.1:153811..154641- (Nannochloropsis gaditana)
ATGTCGAAAATATTTCCATTTCTGACAAGAACACGAAGAGGTCTCATTCC
GGCACGCCCTCCCACCAGCATCAAGCGCGAAAGCAAAAACAGCGGCTGCT
TTCAATCTTTTCTTTCATACCCATTTTTACAACAACCACATCATCATACC
GTCCATAATGAGGCTCCGGATGGCGCTCCTATCGACGTACGTAACTTGCG
GGGGGGTTATGAGAAAGAGAAAGGCTCGTATGGCTTGCTTCTAATAAGTC
CACCGCCTGCCACGCATAATCCATCACAGCCCAAGCTCATGCGAATTCAA
AGAACCACCAGCCCAAGAGTGAGTACCAGAACTGTCAAAGGCCTCCATAA
TTTTTTGACGTGCATTTTGACTCTTTTTCCTCTCGCTTCCTCCCCAATTT
CATTATTTTTAAACTAGCCCAAGGTACCGCAGAAGGAGCTAGTGTTTGGA
AAGGTCTTTAGTGACCACATGTTGGAAATCGACTGGGATTACAAGAACGT
GAGAAAAGAGGGGGTAGGGGGAGAGGGGGGAGGCGGATTTGGAAGTTTAT
GGAGCAAGGAAGGGAATGAGGAACGCCCTCACAAAGGCCACGATTGTCAC
GATGTCCAGGAAGCTTACGTCCACTTAATTTACAAATTTTCCTTCCCACT
TTTTACCGTCCTTCCCATTTTCCGCGCCTGCAGGGCTGGCATCCTCCGGT
CATCAGCGCCTACCACCCTTTGTCCCTCTCCCCCGCTGCTTCGGTCTTGC
ACTACGCCCTGGAATGTTTCGAAGGGATGAAGGCGTACAAGGACGTCTGC
GGACGCTTGCGGCTCTTCCGGCCGGAGTTGA
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Coding sequence (CDS) from alignment at KK037247.1:153811..154641-

>rna7935 ID=rna7935|Name=rna7935|organism=Nannochloropsis gaditana|type=CDS|length=2055bp|location=Sequence derived from alignment at KK037247.1:153811..154641- (Nannochloropsis gaditana)
TTGAGGCTGGCATCCTCCGGTCATCAGCGCCTACCACCCTTTGTCCCTCT
CCCCCGCTGCTTCGGTCTTGCACTACGCCCTGGAATGTTTCGAAGGGATG
AAGGCCCCAAGGTACCGCAGAAGGAGCTAGTGTTTGGAAAGGTCTTTAGT
GACCACATGTTGGAAATCGACTGGGATTACAAGAACCCCAAGCTCATGCG
AATTCAAAGAACCACCAGCCCAAGAATGTCGAAAATATTTCCATTTCTGA
CAAGAACACGAAGAGGTCTCATTCCGGCACGCCCTCCCACCAGCATCAAG
CGCGAAAGCAAAAACAGCGGCTGCTTTCAATCTTTTCTTTCATACCCATT
TTTACAACAACCACATCATCATACCGTCCATAATGAGGCTCCGGATGGCG
CTCCTATCGACTTGAGGCTGGCATCCTCCGGTCATCAGCGCCTACCACCC
TTTGTCCCTCTCCCCCGCTGCTTCGGTCTTGCACTACGCCCTGGAATGTT
TCGAAGGGATGAAGGCCCCAAGGTACCGCAGAAGGAGCTAGTGTTTGGAA
AGGTCTTTAGTGACCACATGTTGGAAATCGACTGGGATTACAAGAACCCC
AAGCTCATGCGAATTCAAAGAACCACCAGCCCAAGAATGTCGAAAATATT
TCCATTTCTGACAAGAACACGAAGAGGTCTCATTCCGGCACGCCCTCCCA
CCAGCATCAAGCGCGAAAGCAAAAACAGCGGCTGCTTTCAATCTTTTCTT
TCATACCCATTTTTACAACAACCACATCATCATACCGTCCATAATGAGGC
TCCGGATGGCGCTCCTATCGACTTGAGGCTGGCATCCTCCGGTCATCAGC
GCCTACCACCCTTTGTCCCTCTCCCCCGCTGCTTCGGTCTTGCACTACGC
CCTGGAATGTTTCGAAGGGATGAAGGCCCCAAGGTACCGCAGAAGGAGCT
AGTGTTTGGAAAGGTCTTTAGTGACCACATGTTGGAAATCGACTGGGATT
ACAAGAACCCCAAGCTCATGCGAATTCAAAGAACCACCAGCCCAAGAATG
TCGAAAATATTTCCATTTCTGACAAGAACACGAAGAGGTCTCATTCCGGC
ACGCCCTCCCACCAGCATCAAGCGCGAAAGCAAAAACAGCGGCTGCTTTC
AATCTTTTCTTTCATACCCATTTTTACAACAACCACATCATCATACCGTC
CATAATGAGGCTCCGGATGGCGCTCCTATCGACTTGAGGCTGGCATCCTC
CGGTCATCAGCGCCTACCACCCTTTGTCCCTCTCCCCCGCTGCTTCGGTC
TTGCACTACGCCCTGGAATGTTTCGAAGGGATGAAGGCCCCAAGGTACCG
CAGAAGGAGCTAGTGTTTGGAAAGGTCTTTAGTGACCACATGTTGGAAAT
CGACTGGGATTACAAGAACCCCAAGCTCATGCGAATTCAAAGAACCACCA
GCCCAAGAATGTCGAAAATATTTCCATTTCTGACAAGAACACGAAGAGGT
CTCATTCCGGCACGCCCTCCCACCAGCATCAAGCGCGAAAGCAAAAACAG
CGGCTGCTTTCAATCTTTTCTTTCATACCCATTTTTACAACAACCACATC
ATCATACCGTCCATAATGAGGCTCCGGATGGCGCTCCTATCGACTTGAGG
CTGGCATCCTCCGGTCATCAGCGCCTACCACCCTTTGTCCCTCTCCCCCG
CTGCTTCGGTCTTGCACTACGCCCTGGAATGTTTCGAAGGGATGAAGGCC
CCAAGGTACCGCAGAAGGAGCTAGTGTTTGGAAAGGTCTTTAGTGACCAC
ATGTTGGAAATCGACTGGGATTACAAGAACCCCAAGCTCATGCGAATTCA
AAGAACCACCAGCCCAAGAATGTCGAAAATATTTCCATTTCTGACAAGAA
CACGAAGAGGTCTCATTCCGGCACGCCCTCCCACCAGCATCAAGCGCGAA
AGCAAAAACAGCGGCTGCTTTCAATCTTTTCTTTCATACCCATTTTTACA
ACAACCACATCATCATACCGTCCATAATGAGGCTCCGGATGGCGCTCCTA
TCGAC
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Synonyms
Publications