EWM22760.1, cds7913 (CDS) Nannochloropsis gaditana

Overview
NameEWM22760.1
Unique Namecds7913
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:154456..154641 -
Alignment locationKK037247.1:154324..154362 -
Alignment locationKK037247.1:154144..154224 -
Alignment locationKK037247.1:153858..153958 -
Alignment locationKK037247.1:153811..153814 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22760.1
Productbranched-chain-amino-acid aminotransferase
Orig transcript idgnl|cribi|Naga_100516g1.10608.mrna
GenebcaA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:154456..154641 -
KK037247.1supercontigKK037247.1:154324..154362 -
KK037247.1supercontigKK037247.1:154144..154224 -
KK037247.1supercontigKK037247.1:153858..153958 -
KK037247.1supercontigKK037247.1:153811..153814 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001544Aminotrans_IV
Homology
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|585103360|gb|EWM22760.1| (branched-chain-amino-acid aminotransferase [Nannochloropsis gaditana])

HSP 1 Score: 284.648 bits (727), Expect = 2.833e-97
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MSKIFPFLTRTRRGLIPARPPTSIKRESKNSGCFQSFLSYPFLQQPHHHTVHNEAPDGAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            MSKIFPFLTRTRRGLIPARPPTSIKRESKNSGCFQSFLSYPFLQQPHHHTVHNEAPDGAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA
Sbjct:    1 MSKIFPFLTRTRRGLIPARPPTSIKRESKNSGCFQSFLSYPFLQQPHHHTVHNEAPDGAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|1173951393|gb|OQR99282.1| (branched-chain-amino-acid aminotransferase [Achlya hypogyna])

HSP 1 Score: 108.997 bits (271), Expect = 1.243e-25
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 0
Query:   59 APIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            AP+D     + +TT+P+PKVP+++L FG  F+DHMLEIDWD K+GW  P+I  Y PL++ PA+S LHYAL+CFEGMKA
Sbjct:   24 APLDSSKTIVHKTTNPKPKVPKEQLTFGTTFTDHMLEIDWDQKSGWGTPLIRPYGPLNIDPASSSLHYALQCFEGMKA 101          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|1214689137|gb|OWZ04820.1| (Branched-chain amino acid aminotransferase [Phytophthora megakarya])

HSP 1 Score: 108.612 bits (270), Expect = 1.713e-25
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 0
Query:   58 GAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            GA I    ++I+RT+SP+ K+P+++L FGK F+DHMLE+DW+   GW  PVI  Y P+S+ PA++VLHYALECFEGMKA
Sbjct:   23 GADIKASNLQIERTSSPKAKLPKEQLQFGKTFTDHMLEVDWEMGKGWGNPVIHPYGPISMDPASAVLHYALECFEGMKA 101          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|675192303|ref|XP_008905036.1| (branched-chain amino acid aminotransferase [Phytophthora parasitica INRA-310] >gi|568095120|gb|ETN09890.1| branched-chain amino acid aminotransferase [Phytophthora parasitica INRA-310])

HSP 1 Score: 108.612 bits (270), Expect = 1.823e-25
Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 0
Query:   58 GAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            GA I    ++++RT++P+PK+P+++L FGK F+DHMLE+DW+   GW  PVI  Y P++L PA++VLHYALECFEGMKA
Sbjct:   23 GADISYANLQVERTSNPKPKLPKEQLKFGKTFTDHMLEVDWELGKGWGSPVIHPYGPMALDPASAVLHYALECFEGMKA 101          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|566024635|gb|ETI47546.1| (branched-chain amino acid aminotransferase [Phytophthora parasitica P1569] >gi|567961945|gb|ETK87479.1| branched-chain amino acid aminotransferase [Phytophthora parasitica] >gi|567990682|gb|ETL40907.1| branched-chain amino acid aminotransferase [Phytophthora parasitica] >gi|568019923|gb|ETL94063.1| branched-chain amino acid aminotransferase [Phytophthora parasitica] >gi|568050355|gb|ETM47300.1| branched-chain amino acid aminotransferase [Phytophthora parasitica] >gi|570328301|gb|ETO76249.1| branched-chain amino acid aminotransferase [Phytophthora parasitica P1976] >gi|570952088|gb|ETP17345.1| branched-chain amino acid aminotransferase [Phytophthora parasitica CJ01A1] >gi|570986331|gb|ETP45379.1| branched-chain amino acid aminotransferase [Phytophthora parasitica P10297] >gi|970651644|gb|KUF90427.1| Phospholipid-transporting ATPase 3 [Phytophthora nicotianae] >gi|970663567|gb|KUG00697.1| Branched-chain-amino-acid aminotransferase [Phytophthora nicotianae])

HSP 1 Score: 108.612 bits (270), Expect = 1.980e-25
Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 0
Query:   58 GAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            GA I    ++++RT++P+PK+P+++L FGK F+DHMLE+DW+   GW  PVI  Y P++L PA++VLHYALECFEGMKA
Sbjct:   23 GADISYANLQVERTSNPKPKLPKEQLKFGKTFTDHMLEVDWELGKGWGSPVIHPYGPMALDPASAVLHYALECFEGMKA 101          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|1160568831|ref|XP_020427975.1| (branched-chain amino acid aminotransferase [Polysphondylium pallidum PN500] >gi|281201632|gb|EFA75841.1| branched-chain amino acid aminotransferase [Polysphondylium pallidum PN500])

HSP 1 Score: 108.227 bits (269), Expect = 3.358e-25
Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 0
Query:    5 FPFLTRTRRGLIPARPPTSIKRESKNSG--CFQSFLSYPFLQQPHHHTVHNEAPDGAPIDPKLMRIQRTTSPRPKVPQK-ELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            F     T++ ++ A+  TSI R S N+    F +  S+   Q+P              I+   + +++T  P PK   K +L+FGK FSDHMLEI+WD  NGW  P ISAYH LSL P+ASV HYA+ECFEGMKA
Sbjct:    4 FRVFQSTKKIILQAKMFTSILRNSYNTNRVAFNAIRSFSTAQKP--------------INVNSLVVEKTKQPLPKFTDKNKLIFGKEFSDHMLEIEWDINNGWSAPKISAYHNLSLPPSASVFHYAIECFEGMKA 124          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|448513101|ref|XP_003866867.1| (Bat21 branched chain amino acid aminotransferase [Candida orthopsilosis Co 90-125] >gi|380351205|emb|CCG21428.1| Bat21 branched chain amino acid aminotransferase [Candida orthopsilosis Co 90-125])

HSP 1 Score: 107.842 bits (268), Expect = 4.002e-25
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:   37 FLSYPFLQQPHHHTVHNEAPDGAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
             LS  FL +  +    N     AP++   + I++TT+P+PK+P+ ELVFGK F+DHMLE++WD + GW  P IS YH LSL P+  V HYA E FEGMKA
Sbjct:   10 LLSRSFLARSFNR--FNSTNATAPLNASKLVIEKTTNPKPKLPKNELVFGKTFTDHMLEVEWDTETGWGIPKISPYHNLSLDPSTIVFHYAFELFEGMKA 107          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|354546732|emb|CCE43464.1| (hypothetical protein CPAR2_211080 [Candida parapsilosis])

HSP 1 Score: 107.842 bits (268), Expect = 4.044e-25
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   39 SYPFLQQ---PHHHTVHNEAPDGAPIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            S+P L +   P      N     AP++   + I++TTSP+PK+P+ ELVFGK F+DHMLE++WD + GW  P IS YH LSL P+  V HYA E FEGMKA
Sbjct:    7 SFPLLSRTLVPRPFYRFNSTQTVAPLNASKLVIEKTTSPKPKLPKNELVFGKTFTDHMLEVEWDAETGWGAPKISPYHNLSLDPSTIVFHYAFELFEGMKA 107          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|569439736|gb|ETO36257.1| (branched-chain amino acid aminotransferase [Reticulomyxa filosa])

HSP 1 Score: 107.842 bits (268), Expect = 7.151e-25
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 0
Query:   61 IDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            ID K + IQ+TTSP+ K   ++L+FG  F+DHMLEIDWD  NGWH P+I  Y PLSL P+ASVLHYA+E FEG+KA
Sbjct:   47 IDSKKLIIQKTTSPKKKTAYEQLIFGHEFTDHMLEIDWDQVNGWHEPIIRPYGPLSLEPSASVLHYAIEAFEGLKA 122          
BLAST of EWM22760.1 vs. NCBI_GenBank
Match: gi|149248248|ref|XP_001528511.1| (branched-chain-amino-acid aminotransferase, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239] >gi|146448465|gb|EDK42853.1| branched-chain-amino-acid aminotransferase, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239])

HSP 1 Score: 107.071 bits (266), Expect = 8.142e-25
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 0
Query:   59 APIDPKLMRIQRTTSPRPKVPQKELVFGKVFSDHMLEIDWDYKNGWHPPVISAYHPLSLSPAASVLHYALECFEGMKA 136
            AP+D   + I++TT+P+ K+P+ ELVFGK F+DHMLEI+W+   GW  P IS YH LSL P+  V HYA ECFEGMKA
Sbjct:   26 APLDASKLIIEKTTTPKLKLPKDELVFGKTFTDHMLEIEWNKSTGWGAPKISPYHNLSLDPSTIVFHYAFECFEGMKA 103          
The following BLAST results are available for this feature:
BLAST of EWM22760.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103360|gb|EWM22760.1|2.833e-97100.00branched-chain-amino-acid aminotransferase [Nannoc... [more]
gi|1173951393|gb|OQR99282.1|1.243e-2558.97branched-chain-amino-acid aminotransferase [Achlya... [more]
gi|1214689137|gb|OWZ04820.1|1.713e-2558.23Branched-chain amino acid aminotransferase [Phytop... [more]
gi|675192303|ref|XP_008905036.1|1.823e-2556.96branched-chain amino acid aminotransferase [Phytop... [more]
gi|566024635|gb|ETI47546.1|1.980e-2556.96branched-chain amino acid aminotransferase [Phytop... [more]
gi|1160568831|ref|XP_020427975.1|3.358e-2544.44branched-chain amino acid aminotransferase [Polysp... [more]
gi|448513101|ref|XP_003866867.1|4.002e-2550.00Bat21 branched chain amino acid aminotransferase [... [more]
gi|354546732|emb|CCE43464.1|4.044e-2550.50hypothetical protein CPAR2_211080 [Candida parapsi... [more]
gi|569439736|gb|ETO36257.1|7.151e-2563.16branched-chain amino acid aminotransferase [Reticu... [more]
gi|149248248|ref|XP_001528511.1|8.142e-2558.97branched-chain-amino-acid aminotransferase, mitoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7935rna7935Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications