rna7920, rna7920 (mRNA) Nannochloropsis gaditana

Overview
Namerna7920
Unique Namerna7920
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length609
Alignment locationKK037247.1:94944..96277 +

Link to JBrowse

Properties
Property NameValue
ProductVesicle transport protein, Got1/SFT2
Orig transcript idgnl|cribi|Naga_100223g4.8900.mrna
Orig protein idgnl|cribi|Naga_100223g4.8900
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:94944..96277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100223g4gene7671Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7920rna7920-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22772.1cds7898Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7920 ID=rna7920|Name=rna7920|organism=Nannochloropsis gaditana|type=mRNA|length=609bp
ATGAGGCCTCACTTGTATCTTGCTCCTTTTATTTTCGCAGGTGGTTGCAG
CTTTGACCAGGTTGATGAATCGATTGATGGAAAAGACCACAGCCAAGCGC
GAAAGAAGCAGATATTTCAAGCAATAATACTGCCAGCTCCAGAAGCATTG
AAACAAAGTTTACGAGTCGTTCTGCCCGCAAAATGTCAGCATCTTAAGCC
TCCTGGTCGGTTTCAGCTGACAAAATACTTAGGGATGAAAGTGAGCAATT
CCATGGCAATCAGTCAAGCCTCCTCCTTTGCCGATCCCGAGGAGCTCCGT
CGACGCCAAACGCGCGCGGCTCGTTTCGGCCCCTCCCTGTCCACCTCGGT
GCCCTCACCCTCCACTTCTACACACCCTGCGACGCTGAAGAAGAAAGAAT
CTCGGAAAGGCCAAGTGCGGTACGGGCCAGTGGTGGGGACTTGTGTTGTG
GTGGAGAAAGACTACACGCGGTCGGCGGACGATTTCGACCCTGCCTTGGT
GCGGCCGCCACCTGTACTGCAGGAGGCGCTGCGCTGCGTAAAAGCCCATT
GGGCAAAGCACGAGGACTATGCACATGCCTGCTCCCAGACGCCTTCGCCG
TCCACGTGA
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protein sequence of rna7920

>rna7920-protein ID=rna7920-protein|Name=rna7920|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNV
GRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLN
YGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMG
SFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVAS
TGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS
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mRNA from alignment at KK037247.1:94944..96277+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7920 ID=rna7920|Name=rna7920|organism=Nannochloropsis gaditana|type=mRNA|length=1334bp|location=Sequence derived from alignment at KK037247.1:94944..96277+ (Nannochloropsis gaditana)
aaaaaccCCTCCCGTAAACAAGAAGGCTATACACCATTCTTGTGCTCTGG
ACTGCCTCCGCACGGCCAGCATTGTCGTTGTAGACATCACATTCACGTGC
GCAtcgattccccccccctggcctccgACAGTCACCGCATCGGGGGGAAG
TGGATGCACATAAGGATGAAGACCTCTGGTGGCACAAATCCAGCAGTAGG
AGGCGGGAGCCAGTCCTTTGGGGACTGGTACACGCAATACGCGGCTCAAC
AACGGCAAGAAGAAGGTATGGTTGCAGGACAGATAGGAGAGGGTGTCTAA
ATGGTACTGGTTCGAGTATGAGAGATCTGAGGCGCGGCATTAGAcctctc
ccgtcgtcctcggTGTCCCCACACGCACGAAcgatgaaaaagaaaagacc
CACCTATCGATTCAAACATCGACATGGTCCGTCGGTCCGTCTCCCTGCGC
GCTCCTGTCTCCCCTCTTAGCCTTCCGATGCGTGAAActgacttcctctc
ccccattcccACTATCGACACACAGGAAACGGCGACATCGAATCTGGCCT
GCTTGGCAACGTGGGCCGTTTTTTCCGTGACAGGGGCCTGGGGGATGCCC
ACGACCAAGTCTCTGGCTTTGCCGACCGGTTTATCACCAGCATCCgtggg
gacggggagggaaacggaggccTCGTAGGAGGGGCGAAGGCCACCGTGGA
GAGCACCTTGAACTACGGTGCACGTCTGCGGGGCTTCGTGGCATTGCTGC
TGGTGGGAATTTTGTTTTACCTCCTGGCCTTCTTCGTGGGCCTTCCTGTC
ATCGTCTTCCGACCCGCCAAATTTGCACTGAGTGCAACCTTGGGCAGCCT
GTGTACCATGGGAAGTTTCTCGGTCCTGGTCGGCCCCCGCGTCCATTTGC
AATCCTTGTTGGTGTGGGAACGCCTCCCGTTCGCCGTCGCTTACCTGGGC
TCTTTGGTTCTCACCTTGTACGCCTCCTTGATCTTGCGGAGCTACCTCTG
GGTGGTCGCTTCCACGGGATTTCAAATTGGGGCTTTTGTGTGGTACCTGC
TCGCTTTCCTGCCGGGGGGACCGGCAGGCTTGAGGGTGTTAGGCGGTGTG
ATGGTGAGAGGGGTGATGGGGTGCGGGAAGACCTTGACCTGGTGTCTGTC
AAGCCTAGTGTCATGAGataaggcagggaggccaatgtcgggagggggaa
gaaagaggcccTCGGGGGGAATGTAAGTGAGCGGTGTAAATAACAAAGCA
AAGAATGCCAAGACCTGTCTCCGATCCATGTGTAGCAAGGTAACATGAGG
GTAGAAGGGCGACGCGCCCGGTGGtacttccttc
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Coding sequence (CDS) from alignment at KK037247.1:94944..96277+

>rna7920 ID=rna7920|Name=rna7920|organism=Nannochloropsis gaditana|type=CDS|length=1506bp|location=Sequence derived from alignment at KK037247.1:94944..96277+ (Nannochloropsis gaditana)
ATGCACATAAGGATGAAGACCTCTGGTGGCACAAATCCAGCAGTAGGAGG
CGGGAGCCAGTCCTTTGGGGACTGGTACACGCAATACGCGGCTCAACAAC
GGCAAGAAGAAGGAAACGGCGACATCGAATCTGGCCTGCTTGGCAACGTG
GGCCGTTTTTTCCGTGACAGGGGCCTGGGGGATGCCCACGACCAAGTCTC
TGGCTTTGCCGACCGGTTTATCACCAGCATCCgtggggacggggagggaa
acggaggccTCGTAGGAGGGGCGAAGGCCACCGTGGAGAGCACCTTGAAC
TACGGTGCACGTCTGCGGGGCTTCGTGGCATTGCTGCTGGTGGGAATTTT
GTTTTACCTCCTGGCCTTCTTCGTGGGCCTTCCTGTCATCGTCTTCCGAC
CCGCCAAATTTGCACTGAGTGCAACCTTGGGCAGCCTGTGTACCATGGGA
AGTTTCTCGGTCCTGGTCGGCCCCCGCGTCCATTTGCAATCCTTGTTGGT
GTGGGAACGCCTCCCGTTCGCCGTCGCTTACCTGGGCTCTTTGGTTCTCA
CCTTGTACGCCTCCTTGATCTTGCGGAGCTACCTCTGGGTGGTCGCTTCC
ACGGGATTTCAAATTGGGGCTTTTGTGTGGTACCTGCTCGCTTTCCTGCC
GGGGGGACCGGCAGGCTTGAGGGTGTTAGGCGGTGTGATGGTGAGAGGGG
TGATGGGGTGCGGGAAGACCTTGACCTGGTGTCTGTCAAGCCTAGTGTCA
TGAATGCACATAAGGATGAAGACCTCTGGTGGCACAAATCCAGCAGTAGG
AGGCGGGAGCCAGTCCTTTGGGGACTGGTACACGCAATACGCGGCTCAAC
AACGGCAAGAAGAAGGAAACGGCGACATCGAATCTGGCCTGCTTGGCAAC
GTGGGCCGTTTTTTCCGTGACAGGGGCCTGGGGGATGCCCACGACCAAGT
CTCTGGCTTTGCCGACCGGTTTATCACCAGCATCCgtggggacggggagg
gaaacggaggccTCGTAGGAGGGGCGAAGGCCACCGTGGAGAGCACCTTG
AACTACGGTGCACGTCTGCGGGGCTTCGTGGCATTGCTGCTGGTGGGAAT
TTTGTTTTACCTCCTGGCCTTCTTCGTGGGCCTTCCTGTCATCGTCTTCC
GACCCGCCAAATTTGCACTGAGTGCAACCTTGGGCAGCCTGTGTACCATG
GGAAGTTTCTCGGTCCTGGTCGGCCCCCGCGTCCATTTGCAATCCTTGTT
GGTGTGGGAACGCCTCCCGTTCGCCGTCGCTTACCTGGGCTCTTTGGTTC
TCACCTTGTACGCCTCCTTGATCTTGCGGAGCTACCTCTGGGTGGTCGCT
TCCACGGGATTTCAAATTGGGGCTTTTGTGTGGTACCTGCTCGCTTTCCT
GCCGGGGGGACCGGCAGGCTTGAGGGTGTTAGGCGGTGTGATGGTGAGAG
GGGTGATGGGGTGCGGGAAGACCTTGACCTGGTGTCTGTCAAGCCTAGTG
TCATGA
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Synonyms
Publications