EWM22772.1, cds7898 (CDS) Nannochloropsis gaditana

Overview
NameEWM22772.1
Unique Namecds7898
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:95097..95208 +
Alignment locationKK037247.1:95469..96109 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22772.1
ProductVesicle transport protein, Got1/SFT2
Orig transcript idgnl|cribi|Naga_100223g4.8900.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:95097..95208 +
KK037247.1supercontigKK037247.1:95469..96109 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011691Vesicle_transpt_SFT2
IPR007305Vesicle_transpt_Got1/SFT2
Homology
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|585103378|gb|EWM22772.1| (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana])

HSP 1 Score: 494.582 bits (1272), Expect = 1.000e-176
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query:    1 MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250
            MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS
Sbjct:    1 MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|553184036|ref|XP_005854014.1| (hypothetical protein NGA_0223902 [Nannochloropsis gaditana CCMP526] >gi|553187855|ref|XP_005854692.1| hypothetical protein NGA_0223901 [Nannochloropsis gaditana CCMP526] >gi|422294366|gb|EKU21666.1| hypothetical protein NGA_0223901 [Nannochloropsis gaditana CCMP526] >gi|422295044|gb|EKU22343.1| hypothetical protein NGA_0223902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 491.886 bits (1265), Expect = 1.261e-175
Identity = 249/250 (99.60%), Postives = 249/250 (99.60%), Query Frame = 0
Query:    1 MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250
            MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLS LVS
Sbjct:    1 MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSILVS 250          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|299117456|emb|CBN73959.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 149.058 bits (375), Expect = 1.389e-40
Identity = 88/231 (38.10%), Postives = 127/231 (54.98%), Query Frame = 0
Query:   24 DWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRG--------VMGCGKTLTWCLS 246
             WY     Q  +EE  GD+E G      RF++                 F+ +     + +  ++G         ++Y  R +GFV  LL+ + F++LAF +GLP+I+ RP KFAL+ TLGS   MGSF++L GP  HL+S+L  +RLPF VAY+GS+  TLYA LIL+SY+ VV  +  Q+ A  WY L+F+PGG  G+R     + +         + GC KTL +CLS
Sbjct:   21 QWYLD--MQDAKEEETGDVEDGSAPG-WRFWQANEKKTDGQAAQALLPGFLRNEAAAPDTDAVIMG---------MSYQQRFKGFVVSLLLSVAFFVLAFVIGLPMIMLRPHKFALTFTLGSFFFMGSFAMLKGPVAHLKSMLARDRLPFTVAYVGSMGATLYACLILQSYMMVVTCSVIQLLALAWYFLSFVPGGSQGMRYFLSAIHKTARYTLLPCIEGCRKTLCFCLS 239          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|219109569|ref|XP_002176539.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411074|gb|EEC51002.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 119.783 bits (299), Expect = 1.700e-29
Identity = 66/170 (38.82%), Postives = 103/170 (60.59%), Query Frame = 0
Query:   92 KATVESTLN-------YGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLI---LRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLR----VLGGVMVRGVMGCGKTLTWCLSS 247
            K+++ES +        Y  R + F ALL +  LF+ LAFF+G+P++V RP KFA+S T+GS+  MGSF +L GP  HLQS+   +RL F+  Y+GS+ +TLY +        YL V+A++  Q+    WYL++FLPGG AGL+     +G ++   ++ C +    C++ 
Sbjct:   49 KSSMESQMPKKIMGMGYQQRFKVFCALLFLSALFFALAFFIGVPLLVTRPQKFAISFTMGSITFMGSFGILKGPMEHLQSMFAADRLYFSFLYIGSMAMTLYFTFTHGGASGYLLVMAASAVQLVCLFWYLISFLPGGAAGLQYVFAAMGHILKPALVVCAQFQAVCVAK 218          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|302788342|ref|XP_002975940.1| (hypothetical protein SELMODRAFT_232666 [Selaginella moellendorffii] >gi|300156216|gb|EFJ22845.1| hypothetical protein SELMODRAFT_232666 [Selaginella moellendorffii])

HSP 1 Score: 118.627 bits (296), Expect = 4.398e-29
Identity = 77/213 (36.15%), Postives = 113/213 (53.05%), Query Frame = 0
Query:   14 AVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVL 226
            A G G+ S    +  YA   RQE G  D+E+G L              A+D +SG    F T  +G  E     + G+  +  S +  G  +  F  LL  G+ F  ++F + LPVIV  P KFA   T+G L  MGSF  L GPR     ++  ERLPF  A++GS+V T+YAS++L SYL+ V  +  Q+ A ++Y++++ PGG +GL  +
Sbjct:   15 AAGDGAPSLLSQWNSYAEVSRQEAGGLDVEAGAL-----------FKSANDTISG---AFSTLSKGVRE-----LPGSVQSATSGIPSGKAITYFALLLGSGVFFLFISFTMFLPVIVLVPQKFASCFTIGCLLVMGSFFALKGPRAQFAHMISQERLPFTAAFVGSIVATIYASMVLHSYLFSVLFSVVQLLALLYYVISYFPGGSSGLTFI 208          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|302770252|ref|XP_002968545.1| (hypothetical protein SELMODRAFT_231162 [Selaginella moellendorffii] >gi|300164189|gb|EFJ30799.1| hypothetical protein SELMODRAFT_231162 [Selaginella moellendorffii])

HSP 1 Score: 117.087 bits (292), Expect = 1.611e-28
Identity = 76/215 (35.35%), Postives = 114/215 (53.02%), Query Frame = 0
Query:   12 NPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVL 226
            + A G G+ S    +  YA   RQE G  D+E+G L              A++ +SG    F T  +G  E     + G+  +  S +  G  +  F  LL  G+ F  ++F + LPVIV  P KFA   T+G L  MGSF  L GPR     ++  ERLPF  A++GS+V T+YAS++L SYL+ V  +  Q+ A ++Y++++ PGG +GL  +
Sbjct:   13 DAAAGDGAPSLLSQWNSYAEVSRQEAGGLDVEAGAL-----------FKSANNTISG---AFSTLSKGVRE-----LPGSVQSATSGIPSGKAITYFALLLGSGVFFLFISFTMFLPVIVLVPQKFASCFTIGCLLVMGSFFALKGPRAQFAHMISQERLPFTAAFVGSIVATIYASMVLHSYLFSVLFSVVQLLALLYYVISYFPGGSSGLTFI 208          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|1150715236|ref|XP_020268253.1| (protein transport protein SFT2-like isoform X2 [Asparagus officinalis])

HSP 1 Score: 112.464 bits (280), Expect = 5.552e-27
Identity = 71/187 (37.97%), Postives = 101/187 (54.01%), Query Frame = 0
Query:   51 GRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGC 237
            G F  +  +  A+D+V+G    F    +G  E     + G+  T  ST+  G  L  F  LL  GI F  +AF V LP +V  P KFA+  TLG    +GSF  L GPR  L  +L  ER+PF + +LGS+V T+Y S++L SY+  V  +G Q+ A  +Y +++ PGG AGL+ L       V+ C
Sbjct:   24 GGFDIEAAVKSANDKVAG---TFSVVSKGMKE-----LPGSFKTATSTVPSGKSLMYFGLLLASGIFFIFIAFTVFLPAMVLVPQKFAICFTLGCAMIVGSFFALKGPRNQLAHMLSKERIPFTLVFLGSMVGTVYVSMVLHSYILSVVFSGLQVLALAYYAISYFPGGAAGLKFLSSTTTSTVLRC 202          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|1210525102|dbj|GAX16294.1| (hypothetical protein FisN_3Hh223 [Fistulifera solaris])

HSP 1 Score: 112.464 bits (280), Expect = 9.266e-27
Identity = 66/164 (40.24%), Postives = 94/164 (57.32%), Query Frame = 0
Query:   99 LNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLI---LRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLR----VLGGVMVRGVMGC--------GKTLTWCLSS 247
            + Y  R + F  LL +  LF+ LAFFVGLP +   P KF+LS ++GSL  M SF +L GP  H +S+L  +R+ F   YLGSL  TL+ +     +  Y  V+ S+G Q+ A +WYL++FLPGG AGL+     +G ++    M C        G+ L+W  SS
Sbjct:   62 MGYQQRFQVFCGLLFLSALFFALAFFVGLPTMAVHPHKFSLSFSMGSLMFMSSFGILKGPMEHFKSMLQPDRMLFTTIYLGSLFFTLFCTFSYGGISGYFMVMLSSGIQLLALLWYLISFLPGGAAGLKYVFAAMGHLLKPVFMACARFQAMCMGRCLSWITSS 225          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|645215942|ref|XP_008218785.1| (PREDICTED: protein transport protein SFT2 [Prunus mume])

HSP 1 Score: 112.464 bits (280), Expect = 1.011e-26
Identity = 80/237 (33.76%), Postives = 115/237 (48.52%), Query Frame = 0
Query:    6 KTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNG-----DIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGC 237
            ++  G + +    S    DW   YAA Q  +E +      D+ES +               A+D VSG        +R D  GN   +  A +TV S    G  L  F   L  G+ F  LAF + LPV+V  P KFA+  TLG    + SF  L GP+  L  +   ERLPF++ +LGS+V T+Y S++L SY+  V  +  Q+ A  +Y +++ PGG AGL+ L   +   VM C
Sbjct:   11 QSGSGADDSQNTSSSLLADW-NSYAASQSTDESSSLGLGFDLESAV-------------RSANDTVSGTFSVVSKGVR-DLPGN---LQSATSTVPS----GKALMYFGLFLATGVFFVFLAFTMFLPVMVLMPQKFAICFTLGCAFIIASFFALKGPKNQLAHMSSRERLPFSLGFLGSMVGTIYVSMVLHSYILSVLFSVIQVLALAYYAVSYFPGGSAGLKFLSSALTSSVMRC 225          
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|593354068|ref|XP_007140128.1| (hypothetical protein PHAVU_008G086300g [Phaseolus vulgaris] >gi|561013261|gb|ESW12122.1| hypothetical protein PHAVU_008G086300g [Phaseolus vulgaris])

HSP 1 Score: 112.079 bits (279), Expect = 1.491e-26
Identity = 79/230 (34.35%), Postives = 114/230 (49.57%), Query Frame = 0
Query:    8 SGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGC 237
            SGG   A    S    DW T  +AQ  Q+  N  +   L         +  +  A+D VSG        +R D  GN      A + V S    G  L  F  LL  G+ F  +AF + LPV+V  P KFA+  TLG    +GSF  L GP+  L  ++  ERLPF +A+LGS+V T+Y S++L SY+  V  +  Q+ +  +Y +++ PGG AG++ L   +   +M C
Sbjct:    9 SGGEEEA-KPASSLLADWNTYASAQSSQDNSNLGLSFDL---------ESAVRSANDTVSGTFSVVSKGVR-DIPGN---FQSATSNVPS----GKALVYFGLLLASGVFFVFIAFTLFLPVMVVMPQKFAICFTLGCGFIIGSFFALKGPKNQLTHMMSMERLPFTLAFLGSMVGTIYVSMVLHSYILSVVFSVVQVLSLGYYSISYFPGGSAGMKFLTSALTSSIMKC 220          
The following BLAST results are available for this feature:
BLAST of EWM22772.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103378|gb|EWM22772.1|1.000e-176100.00Vesicle transport protein, Got1/SFT2 [Nannochlorop... [more]
gi|553184036|ref|XP_005854014.1|1.261e-17599.60hypothetical protein NGA_0223902 [Nannochloropsis ... [more]
gi|299117456|emb|CBN73959.1|1.389e-4038.10conserved unknown protein [Ectocarpus siliculosus][more]
gi|219109569|ref|XP_002176539.1|1.700e-2938.82predicted protein, partial [Phaeodactylum tricornu... [more]
gi|302788342|ref|XP_002975940.1|4.398e-2936.15hypothetical protein SELMODRAFT_232666 [Selaginell... [more]
gi|302770252|ref|XP_002968545.1|1.611e-2835.35hypothetical protein SELMODRAFT_231162 [Selaginell... [more]
gi|1150715236|ref|XP_020268253.1|5.552e-2737.97protein transport protein SFT2-like isoform X2 [As... [more]
gi|1210525102|dbj|GAX16294.1|9.266e-2740.24hypothetical protein FisN_3Hh223 [Fistulifera sola... [more]
gi|645215942|ref|XP_008218785.1|1.011e-2633.76PREDICTED: protein transport protein SFT2 [Prunus ... [more]
gi|593354068|ref|XP_007140128.1|1.491e-2634.35hypothetical protein PHAVU_008G086300g [Phaseolus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7920rna7920Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications