EWM22772.1, cds7898 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|585103378|gb|EWM22772.1| (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana]) HSP 1 Score: 494.582 bits (1272), Expect = 1.000e-176 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 1 MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250
MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS
Sbjct: 1 MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|553184036|ref|XP_005854014.1| (hypothetical protein NGA_0223902 [Nannochloropsis gaditana CCMP526] >gi|553187855|ref|XP_005854692.1| hypothetical protein NGA_0223901 [Nannochloropsis gaditana CCMP526] >gi|422294366|gb|EKU21666.1| hypothetical protein NGA_0223901 [Nannochloropsis gaditana CCMP526] >gi|422295044|gb|EKU22343.1| hypothetical protein NGA_0223902 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 491.886 bits (1265), Expect = 1.261e-175 Identity = 249/250 (99.60%), Postives = 249/250 (99.60%), Query Frame = 0
Query: 1 MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSSLVS 250
MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLS LVS
Sbjct: 1 MHIRMKTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGCGKTLTWCLSILVS 250
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|299117456|emb|CBN73959.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 149.058 bits (375), Expect = 1.389e-40 Identity = 88/231 (38.10%), Postives = 127/231 (54.98%), Query Frame = 0
Query: 24 DWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRG--------VMGCGKTLTWCLS 246
WY Q +EE GD+E G RF++ F+ + + + ++G ++Y R +GFV LL+ + F++LAF +GLP+I+ RP KFAL+ TLGS MGSF++L GP HL+S+L +RLPF VAY+GS+ TLYA LIL+SY+ VV + Q+ A WY L+F+PGG G+R + + + GC KTL +CLS
Sbjct: 21 QWYLD--MQDAKEEETGDVEDGSAPG-WRFWQANEKKTDGQAAQALLPGFLRNEAAAPDTDAVIMG---------MSYQQRFKGFVVSLLLSVAFFVLAFVIGLPMIMLRPHKFALTFTLGSFFFMGSFAMLKGPVAHLKSMLARDRLPFTVAYVGSMGATLYACLILQSYMMVVTCSVIQLLALAWYFLSFVPGGSQGMRYFLSAIHKTARYTLLPCIEGCRKTLCFCLS 239
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|219109569|ref|XP_002176539.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411074|gb|EEC51002.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 119.783 bits (299), Expect = 1.700e-29 Identity = 66/170 (38.82%), Postives = 103/170 (60.59%), Query Frame = 0
Query: 92 KATVESTLN-------YGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLI---LRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLR----VLGGVMVRGVMGCGKTLTWCLSS 247
K+++ES + Y R + F ALL + LF+ LAFF+G+P++V RP KFA+S T+GS+ MGSF +L GP HLQS+ +RL F+ Y+GS+ +TLY + YL V+A++ Q+ WYL++FLPGG AGL+ +G ++ ++ C + C++
Sbjct: 49 KSSMESQMPKKIMGMGYQQRFKVFCALLFLSALFFALAFFIGVPLLVTRPQKFAISFTMGSITFMGSFGILKGPMEHLQSMFAADRLYFSFLYIGSMAMTLYFTFTHGGASGYLLVMAASAVQLVCLFWYLISFLPGGAAGLQYVFAAMGHILKPALVVCAQFQAVCVAK 218
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|302788342|ref|XP_002975940.1| (hypothetical protein SELMODRAFT_232666 [Selaginella moellendorffii] >gi|300156216|gb|EFJ22845.1| hypothetical protein SELMODRAFT_232666 [Selaginella moellendorffii]) HSP 1 Score: 118.627 bits (296), Expect = 4.398e-29 Identity = 77/213 (36.15%), Postives = 113/213 (53.05%), Query Frame = 0
Query: 14 AVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVL 226
A G G+ S + YA RQE G D+E+G L A+D +SG F T +G E + G+ + S + G + F LL G+ F ++F + LPVIV P KFA T+G L MGSF L GPR ++ ERLPF A++GS+V T+YAS++L SYL+ V + Q+ A ++Y++++ PGG +GL +
Sbjct: 15 AAGDGAPSLLSQWNSYAEVSRQEAGGLDVEAGAL-----------FKSANDTISG---AFSTLSKGVRE-----LPGSVQSATSGIPSGKAITYFALLLGSGVFFLFISFTMFLPVIVLVPQKFASCFTIGCLLVMGSFFALKGPRAQFAHMISQERLPFTAAFVGSIVATIYASMVLHSYLFSVLFSVVQLLALLYYVISYFPGGSSGLTFI 208
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|302770252|ref|XP_002968545.1| (hypothetical protein SELMODRAFT_231162 [Selaginella moellendorffii] >gi|300164189|gb|EFJ30799.1| hypothetical protein SELMODRAFT_231162 [Selaginella moellendorffii]) HSP 1 Score: 117.087 bits (292), Expect = 1.611e-28 Identity = 76/215 (35.35%), Postives = 114/215 (53.02%), Query Frame = 0
Query: 12 NPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVL 226
+ A G G+ S + YA RQE G D+E+G L A++ +SG F T +G E + G+ + S + G + F LL G+ F ++F + LPVIV P KFA T+G L MGSF L GPR ++ ERLPF A++GS+V T+YAS++L SYL+ V + Q+ A ++Y++++ PGG +GL +
Sbjct: 13 DAAAGDGAPSLLSQWNSYAEVSRQEAGGLDVEAGAL-----------FKSANNTISG---AFSTLSKGVRE-----LPGSVQSATSGIPSGKAITYFALLLGSGVFFLFISFTMFLPVIVLVPQKFASCFTIGCLLVMGSFFALKGPRAQFAHMISQERLPFTAAFVGSIVATIYASMVLHSYLFSVLFSVVQLLALLYYVISYFPGGSSGLTFI 208
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|1150715236|ref|XP_020268253.1| (protein transport protein SFT2-like isoform X2 [Asparagus officinalis]) HSP 1 Score: 112.464 bits (280), Expect = 5.552e-27 Identity = 71/187 (37.97%), Postives = 101/187 (54.01%), Query Frame = 0
Query: 51 GRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGC 237
G F + + A+D+V+G F +G E + G+ T ST+ G L F LL GI F +AF V LP +V P KFA+ TLG +GSF L GPR L +L ER+PF + +LGS+V T+Y S++L SY+ V +G Q+ A +Y +++ PGG AGL+ L V+ C
Sbjct: 24 GGFDIEAAVKSANDKVAG---TFSVVSKGMKE-----LPGSFKTATSTVPSGKSLMYFGLLLASGIFFIFIAFTVFLPAMVLVPQKFAICFTLGCAMIVGSFFALKGPRNQLAHMLSKERIPFTLVFLGSMVGTVYVSMVLHSYILSVVFSGLQVLALAYYAISYFPGGAAGLKFLSSTTTSTVLRC 202
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|1210525102|dbj|GAX16294.1| (hypothetical protein FisN_3Hh223 [Fistulifera solaris]) HSP 1 Score: 112.464 bits (280), Expect = 9.266e-27 Identity = 66/164 (40.24%), Postives = 94/164 (57.32%), Query Frame = 0
Query: 99 LNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLI---LRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLR----VLGGVMVRGVMGC--------GKTLTWCLSS 247
+ Y R + F LL + LF+ LAFFVGLP + P KF+LS ++GSL M SF +L GP H +S+L +R+ F YLGSL TL+ + + Y V+ S+G Q+ A +WYL++FLPGG AGL+ +G ++ M C G+ L+W SS
Sbjct: 62 MGYQQRFQVFCGLLFLSALFFALAFFVGLPTMAVHPHKFSLSFSMGSLMFMSSFGILKGPMEHFKSMLQPDRMLFTTIYLGSLFFTLFCTFSYGGISGYFMVMLSSGIQLLALLWYLISFLPGGAAGLKYVFAAMGHLLKPVFMACARFQAMCMGRCLSWITSS 225
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|645215942|ref|XP_008218785.1| (PREDICTED: protein transport protein SFT2 [Prunus mume]) HSP 1 Score: 112.464 bits (280), Expect = 1.011e-26 Identity = 80/237 (33.76%), Postives = 115/237 (48.52%), Query Frame = 0
Query: 6 KTSGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNG-----DIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGC 237
++ G + + S DW YAA Q +E + D+ES + A+D VSG +R D GN + A +TV S G L F L G+ F LAF + LPV+V P KFA+ TLG + SF L GP+ L + ERLPF++ +LGS+V T+Y S++L SY+ V + Q+ A +Y +++ PGG AGL+ L + VM C
Sbjct: 11 QSGSGADDSQNTSSSLLADW-NSYAASQSTDESSSLGLGFDLESAV-------------RSANDTVSGTFSVVSKGVR-DLPGN---LQSATSTVPS----GKALMYFGLFLATGVFFVFLAFTMFLPVMVLMPQKFAICFTLGCAFIIASFFALKGPKNQLAHMSSRERLPFSLGFLGSMVGTIYVSMVLHSYILSVLFSVIQVLALAYYAVSYFPGGSAGLKFLSSALTSSVMRC 225
BLAST of EWM22772.1 vs. NCBI_GenBank
Match: gi|593354068|ref|XP_007140128.1| (hypothetical protein PHAVU_008G086300g [Phaseolus vulgaris] >gi|561013261|gb|ESW12122.1| hypothetical protein PHAVU_008G086300g [Phaseolus vulgaris]) HSP 1 Score: 112.079 bits (279), Expect = 1.491e-26 Identity = 79/230 (34.35%), Postives = 114/230 (49.57%), Query Frame = 0
Query: 8 SGGTNPAVGGGSQSFGDWYTQYAAQQRQEEGNGDIESGLLGNVGRFFRDRGLGDAHDQVSGFADRFITSIRGDGEGNGGLVGGAKATVESTLNYGARLRGFVALLLVGILFYLLAFFVGLPVIVFRPAKFALSATLGSLCTMGSFSVLVGPRVHLQSLLVWERLPFAVAYLGSLVLTLYASLILRSYLWVVASTGFQIGAFVWYLLAFLPGGPAGLRVLGGVMVRGVMGC 237
SGG A S DW T +AQ Q+ N + L + + A+D VSG +R D GN A + V S G L F LL G+ F +AF + LPV+V P KFA+ TLG +GSF L GP+ L ++ ERLPF +A+LGS+V T+Y S++L SY+ V + Q+ + +Y +++ PGG AG++ L + +M C
Sbjct: 9 SGGEEEA-KPASSLLADWNTYASAQSSQDNSNLGLSFDL---------ESAVRSANDTVSGTFSVVSKGVR-DIPGN---FQSATSNVPS----GKALVYFGLLLASGVFFVFIAFTLFLPVMVVMPQKFAICFTLGCGFIIGSFFALKGPKNQLTHMMSMERLPFTLAFLGSMVGTIYVSMVLHSYILSVVFSVVQVLSLGYYSISYFPGGSAGMKFLTSALTSSIMKC 220 The following BLAST results are available for this feature:
BLAST of EWM22772.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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