rna7917, rna7917 (mRNA) Nannochloropsis gaditana

Overview
Namerna7917
Unique Namerna7917
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1105
Alignment locationKK037247.1:88959..90156 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101581g1.2307.mrna
Orig protein idgnl|cribi|Naga_101581g1.2307
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:88959..90156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101581g1gene7668Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7917rna7917-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22779.1cds7895Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7917 ID=rna7917|Name=rna7917|organism=Nannochloropsis gaditana|type=mRNA|length=1105bp
TTCTTTGGGACGCCGTCTAGGGCACAGGGGCAACCTGGGTGTTAAATGAG
GGGCATATCGGTCGATTAGGATGTCATTTTGACCTGGAGCCCGCTTGGAA
AGAGGAGGGGGAGTTTGTCACTAGCCCATAAACAAACTTTAAAGCACAGT
CTTTGAGTTTTCTTTCAAAATCCCCATTCATGCCGTCGAAAGAGTGCAGC
CATCCCTTTCAAACACCGCCTGTCGCGTACCACCACGTCTCACGCACGAG
GTCCTAACCCTTTTGGGTCGAAGGGGAGCTGAGCCCAACGTCACAGCACA
AGCAGCCTCCCTGCCCGGCTTGGACAAGCCTCATTTTGACGTTTTGTTTC
CTCGATACGTGGGCTGGCTTTCCTTCACACAGCGTGGCAGACTCTGGTGT
TGCAGCTGGTTAACCACGGTATCGGATGAGTGGGCGGTGACAGCTTGGAC
TGTGGAGTGGGGACGAAGGAAAGTAGCTCCTCCTACCGCTTATTGAAGGC
CGCTCTATCACTCGGGCAGACACAATACCGGGATGCAAAGCTGCAGTCAC
AAGAAAATGGCGTCGAATTGGTGTTGTCAAGGATCCTCTTGTGTGGAAAG
AGTCCAGGAACAGGCTATGGCAGCGAAAACAAAGAAGGGGACAAGAGTAT
TTCACAACAGGGCATCTCCCAGGATGCTGCTTTGTGCATGGTTGAGCTTC
TTTTCGCTTCTCCTCCATCAACCTCTGCCAACGTCCGCCTTCCTCCACCC
ATTCCCGTCGTTGCCCTCCCGTCCCTGCCCTCCCCCCCTCCCTCCTCCCC
CCCTTTGTCTCTCCCCTTTCGCTCCCTTCCCCACGCTCGGCGCCATCCCC
CCCGTGGTCCTCACGGAAGGAGAGACGGAGCGAAGCAGCGACTTGCTCGC
GGAGCTGGACGAACTGGCAGGGGAGGGAAAATACCAGGAAGCTTTGGCTT
TGGTCGGGAGTGGGGGGCATGTGGTGGGGCCGCCGCACTACCACAAGGTG
AGGGGAAGCGGGGCCAAGCCTTTTCCATCGAGCACATATATGTATGGGAG
CGAGTGCCTGGCTTTTCCATCGGCATATGGACGGCGGCATGGTCTGGAGT
CTTGA
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protein sequence of rna7917

>rna7917-protein ID=rna7917-protein|Name=rna7917|organism=Nannochloropsis gaditana|type=polypeptide|length=180bp
MSVPAPSSPPPSSSSGSRASHSEDNSMVVVPSRVLFTTSLGNVVHAEEGE
GGEGHSGGRKQRYRRKGYTITEEDLDGNVVRVTRAPPARKRRRSNTGKEE
ETTMVWTAREGAEETTGAEPSHLHGQCELGDEGQGGDRGACLRQLHPEEG
RFQQQEGLHVLAWSFHNPQRTQQPGVQVPL
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mRNA from alignment at KK037247.1:88959..90156+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7917 ID=rna7917|Name=rna7917|organism=Nannochloropsis gaditana|type=mRNA|length=1198bp|location=Sequence derived from alignment at KK037247.1:88959..90156+ (Nannochloropsis gaditana)
GACTCTTTCCACACAAGAGGATCCTTGACAACACCAATTCGACGCCATTT
TCTTGTGACTGCAGCTTTGCATCCCGGTATTGTGTCTGCCCGAGTGATAG
AGCGGCCTTCAATAAGCGGTAGGAGGAGCTactttccttcgtccccaCTC
CACAGTCCAAGCTGTCACCGCCCACTCATCCGATACCGTGGTTAACCAGC
TGCAACACCAGAGTCTGCCACGCTGTGTGAAGGAAAGCCAGCCCACGTAT
CGAGGAAACAAAACGTCAAAATGAGGCTTGTCCAAGccgggcagggaggc
tgcTTGTGCTGTGACGTTGGGCTCAGCTCCCCTTCGACCCAAAAGGGTTA
GGACCTCGTGCGTGAGACGTGGTGGTACGCGACAGGCGGTGTTTGAAAGG
GATGGCTGCACTCTTTCGACGGCATGAATGGGGATTTTGAAAGAAAACTC
AAAGACTGTGCTTTAAAGTTTGTTTATGGGCTAGTGACAaactccccctc
ctctttccaagCGGGCTCCAGGTCAAAATGACATCCTAATCGACCGATAT
GCCCCTCATTTAACACCCAGGTTGCCCCTGTGCCCTAGACGGCGTCCCAA
AGAACCATCTGTGGTGTCGCGACCACAAGGAACGGagtagagggagggca
ttCCAAGTGATGAgtgttcctgctccttcctccccccctccgtcgtcctc
ctccggctcccgcGCCTCACACTCCGAAGATAACAGCATGGTGGTCGTCC
CCTCCAGAGTGCTCTTTACCACCTCGCTGGGAAATGTGGTgcatgcggag
gaaggggaaggaggtgaaggccaCTCGGGAGGGCGCAAGCAAAGGTACCG
CCGCAAGGGGTATACGATCACGGAAGAAGATCTGGATGGAAACGTGGTGC
GAGTGACCCGCGCCCCGCCCGCACGGAAGCGGAGACGGTCGAACaccggg
aaggaagaggaaacgacCATGGTGTGGACGGccagggaaggggcggaaga
gaCTACGGGAGCGGAGCCCTCTCACCTTCATGGGCAATGCGAGCTCGGTG
atgagggacaggggggcgATCGGGGAGCATGCCTGAGACAACTGCACCCA
GAAGAAGGACGATTCCAGCAGCAGGAAGGATTGCACGTCCTGGCATGGTC
CTTTCACAATCCACAGCGCACCCAGCAGCCAGGCGTGCAAGTTCCCCT
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Coding sequence (CDS) from alignment at KK037247.1:88959..90156+

>rna7917 ID=rna7917|Name=rna7917|organism=Nannochloropsis gaditana|type=CDS|length=539bp|location=Sequence derived from alignment at KK037247.1:88959..90156+ (Nannochloropsis gaditana)
ATGAgtgttcctgctccttcctccccccctccgtcgtcctcctccggctc
ccgcGCCTCACACTCCGAAGATAACAGCATGGTGGTCGTCCCCTCCAGAG
TGCTCTTTACCACCTCGCTGGGAAATGTGGTgcatgcggaggaaggggaa
ggaggtgaaggccaCTCGGGAGGGCGCAAGCAAAGGTACCGCCGCAAGGG
GTATACGATCACGGAAGAAGATCTGGATGGAAACGTGGTGCGAGTGACCC
GCGCCCCGCCCGCACGGAAGCGGAGACGGTCGAACaccgggaaggaagag
gaaacgacCATGGTGTGGACGGccagggaaggggcggaagagaCTACGGG
AGCGGAGCCCTCTCACCTTCATGGGCAATGCGAGCTCGGTGatgagggac
aggggggcgATCGGGGAGCATGCCTGAGACAACTGCACCCAGAAGAAGGA
CGATTCCAGCAGCAGGAAGGATTGCACGTCCTGGCATGGTCCTTTCACAA
TCCACAGCGCACCCAGCAGCCAGGCGTGCAAGTTCCCCT
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Synonyms
Publications