rna7915, rna7915 (mRNA) Nannochloropsis gaditana

Overview
Namerna7915
Unique Namerna7915
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length944
Alignment locationKK037247.1:85898..87458 +

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Properties
Property NameValue
ProductNMT1/THI5-like protein
Orig transcript idgnl|cribi|Naga_101401g2.1530.mrna
Orig protein idgnl|cribi|Naga_101401g2.1530
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:85898..87458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101401g2gene7666Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7915rna7915-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22780.1cds7893Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7915 ID=rna7915|Name=rna7915|organism=Nannochloropsis gaditana|type=mRNA|length=944bp
CCATTGTTGTCGTGCATGTTTCCACGGGCGGAGTCAACGCACTTCTTTTC
GGAGAGTTCCAGTCGGATAGTTTACGTTCCGCTATGCCCTCAGTGGAGCA
ACGGCTACACACAGAGCTGCACGCCTCAAAAATGGCCAGAAATCCCTCAA
TATGTGTCAGTGCATCGCATCTTTGTCCATTTCACAACAAGTTTAGGAGA
AATTTATGTTTTGTCCGGTCAAAGGGCGCACATTATTTCTTGTGACCGCG
GTAGACATGGCTACTGCTTGCGGAGACGAGCTAAAGCTTCTGTTTGTGGT
TAAAAATGTCATGCCTCTTGCTCGATACAAAACGCGTGCGATGACCCTCT
TCGCGCGCCTACCCTGCTCTTGGATGGCCAAGGAGGAGATTACCATGCAT
TCAAACGTGTAGCCGAGGCTGTCGCAAAGAACTTTCGTGCTTAGGTTCTG
CATGGCCAACCTTCTGAACGCCCTGTGATATTTGCCAGAGTACCACACCA
CAGAAGAAGGATCCACACAAACCCCTACACATTCTCCCATGCGACAATCC
ATCCCCTGCACAGCAACACGGCTTGAAAAGAGGTCTCAAGGGAGAATTAG
TGATGCCTCGGGGGTTGCCCGTCGCGTCTGCCATGACGGCCATCCAACGT
GTACTAGGTCGCAGCGTCCTTGCCCGTACCGTAGCCCTTCCCCATGACCG
GCGTCTCTCCATACCTGTGCTGCGTAGGAAAGGCAGCATAATGGGATACG
TCTTCCCAGAGTCGTCGGAAGAAATTTATCCCCCCGGCAATGGACCCAGG
ATTCTGGATGGACGCATGCTAAGTCGTCGCATCCGCGCAGGCATCAAAGC
TCAAGTAAAGATTTTCAAGGAAGAACACGGCTATGTACCTCACTTGGCAA
TCATCACGGTGGGAGAGCGACCGCCAGAAGAAGCGGAGCGGTAA
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protein sequence of rna7915

>rna7915-protein ID=rna7915-protein|Name=rna7915|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MPILFQKDVTFMPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLV
LRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVV
SAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQRLLHQAV
GSS
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mRNA from alignment at KK037247.1:85898..87458+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7915 ID=rna7915|Name=rna7915|organism=Nannochloropsis gaditana|type=mRNA|length=1561bp|location=Sequence derived from alignment at KK037247.1:85898..87458+ (Nannochloropsis gaditana)
TATCCGACTGGAACTCTCCGAAAAGAAGTGCGTTGACTCCGCCCGTGGAA
ACATGCACGACAACAATGGATGGAAACCTTATGTACAAGAAAGGGGTGTG
TGTGGCGGTGTGATGGCCTTTTTATATGAAGCTATTTAAGCAAAACGACC
GTACGGGGTTGGACGGATTTCGACATCAACCAGGAAATGCCAGGCTCTTG
ATAGCACATCCTCTTACTTTTGACCTGCTCAACCGTTCGCCCTGTCATTT
CGATTTGTTCGTCATTGTGTATGCTCTAAATTTCATCAATCAGCGGTCTT
GGTCGATTCCGAGGGTTTGTCAGCTCCTTCTGGCTTCTACTGGGGATTTT
CTCCCCTCATACGCTTGGAAGGCATCCTTACGCAGTGCGATTTTTTCGTA
CACCTGCGCGTGAGCCAAAAAGCCTGACTGTAGTTTTCTATGCCCATTCT
TTTCCAAAAGGACGTCACATTCATGCCACGGCCACGCGTCTTCTTCCAGG
GTGATTACGagcttctttcttcccaggTGCGAATTAATCGAGTCGtgctc
cctctttctccccgaCAAACTTGCATGTATGCCGCAGATATCCATGTCCA
TGGCAATGCATCCCATACCTTTCCGAACTAGTATGCCACCACTTTTCATT
GTCACCTTGACgttctcttcttccattttcttgacATGTCTGGGCACGGT
AGTTCGCTGGtctggtggtggcggccaaATCGGGGTTATTCCAGTCCCGT
GGCATAGACCTGGTATTGCGTGGAAAAGTCCGTCCCGGATCCGAAGCAGA
CGTGGTCGCGGGCATTCAGGAAGCCGTCGGAGATCGGGGAAACCTTGCCT
TGGGGTGTGCAGAGCAGTGAGTgggggggccaggggggaggaacgggtaC
GGGATTGACGCTTATTGTGGGAGTGGAGGTAGCCCGTGCAAGATAGCTTC
ATAGCATTTCTTCAAAATTTTTCGGTCATTGTGGTTGTATGCTTTGATCC
AACTTCCTCTCTTTGAAACTCTCCTTTTCtagcccctccccccccctctc
tcagatacgtcttcctccttcctccctctcaccctccctacctccctacc
tccccccctacctcctcccctcgccccctccgtttccctcccacgcctca
CAGAAACAtcgtcgtccccgcccaGGCTCATGGCGCCCCTGTTCAGGTTG
TGAGCGCCATGTATCACAAAAGTCCCCTCGgtcttggcctcctccctacc
tccagAATCACCAGCCTCAAGtacgacctccctccctccctccttccctc
cctccctcctcctcttccttccttccttccttcttttcttcatcctGGGA
CTAAGTCTGGACTGACAAGCAACTTTcttgcttcccttcctccttccctc
cctccctccctccctctttccctcccaacctccctcccgattTCTCTTCC
AATTTGATGGATTCGGCAGAGAGCTGGCGCAAAGGCAGATGAGGGTTGGG
ATGCTTGCAGATTCCTTAAGTCTTGCACAAAGACTCCTCCATCAGGCGGT
GGGGAGTAGCA
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Coding sequence (CDS) from alignment at KK037247.1:85898..87458+

>rna7915 ID=rna7915|Name=rna7915|organism=Nannochloropsis gaditana|type=CDS|length=1840bp|location=Sequence derived from alignment at KK037247.1:85898..87458+ (Nannochloropsis gaditana)
ATGCCCATTCTTTTCCAAAAGGACGTCACATTCATGCCACGGCCACGCGT
CTTCTTCCAGGGTGATTACGagcttctttcttcccagTTCGCTGGtctgg
tggtggcggccaaATCGGGGTTATTCCAGTCCCGTGGCATAGACCTGGTA
TTGCGTGGAAAAGTCCGTCCCGGATCCGAAGCAGACGTGGTCGCGGGCAT
TCAGGAAGCCGTCGGAGATCGGGGAAACCTTGCCTTGGGGTGTGCAGAGC
AAAACAtcgtcgtccccgcccaGGCTCATGGCGCCCCTGTTCAGGTTGTG
AGCGCCATGTATCACAAAAGTCCCCTCGgtcttggcctcctccctacctc
cagAATCACCAGCCTCAAAGAGCTGGCGCAAAGGCAGATGAGGGTTGGGA
TGCTTGCAGATTCCTTAAGTCTTGCACAAAGACTCCTCCATCAGGCGGTG
GGGAGTAGCAATGCCCATTCTTTTCCAAAAGGACGTCACATTCATGCCAC
GGCCACGCGTCTTCTTCCAGGGTGATTACGagcttctttcttcccagTTC
GCTGGtctggtggtggcggccaaATCGGGGTTATTCCAGTCCCGTGGCAT
AGACCTGGTATTGCGTGGAAAAGTCCGTCCCGGATCCGAAGCAGACGTGG
TCGCGGGCATTCAGGAAGCCGTCGGAGATCGGGGAAACCTTGCCTTGGGG
TGTGCAGAGCAAAACAtcgtcgtccccgcccaGGCTCATGGCGCCCCTGT
TCAGGTTGTGAGCGCCATGTATCACAAAAGTCCCCTCGgtcttggcctcc
tccctacctccagAATCACCAGCCTCAAAGAGCTGGCGCAAAGGCAGATG
AGGGTTGGGATGCTTGCAGATTCCTTAAGTCTTGCACAAAGACTCCTCCA
TCAGGCGGTGGGGAGTAGCAATGCCCATTCTTTTCCAAAAGGACGTCACA
TTCATGCCACGGCCACGCGTCTTCTTCCAGGGTGATTACGagcttctttc
ttcccagTTCGCTGGtctggtggtggcggccaaATCGGGGTTATTCCAGT
CCCGTGGCATAGACCTGGTATTGCGTGGAAAAGTCCGTCCCGGATCCGAA
GCAGACGTGGTCGCGGGCATTCAGGAAGCCGTCGGAGATCGGGGAAACCT
TGCCTTGGGGTGTGCAGAGCAAAACAtcgtcgtccccgcccaGGCTCATG
GCGCCCCTGTTCAGGTTGTGAGCGCCATGTATCACAAAAGTCCCCTCGgt
cttggcctcctccctacctccagAATCACCAGCCTCAAAGAGCTGGCGCA
AAGGCAGATGAGGGTTGGGATGCTTGCAGATTCCTTAAGTCTTGCACAAA
GACTCCTCCATCAGGCGGTGGGGAGTAGCAATGCCCATTCTTTTCCAAAA
GGACGTCACATTCATGCCACGGCCACGCGTCTTCTTCCAGGGTGATTACG
agcttctttcttcccagTTCGCTGGtctggtggtggcggccaaATCGGGG
TTATTCCAGTCCCGTGGCATAGACCTGGTATTGCGTGGAAAAGTCCGTCC
CGGATCCGAAGCAGACGTGGTCGCGGGCATTCAGGAAGCCGTCGGAGATC
GGGGAAACCTTGCCTTGGGGTGTGCAGAGCAAAACAtcgtcgtccccgcc
caGGCTCATGGCGCCCCTGTTCAGGTTGTGAGCGCCATGTATCACAAAAG
TCCCCTCGgtcttggcctcctccctacctccagAATCACCAGCCTCAAAG
AGCTGGCGCAAAGGCAGATGAGGGTTGGGATGCTTGCAGATTCCTTAAGT
CTTGCACAAAGACTCCTCCATCAGGCGGTGGGGAGTAGCA
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Synonyms
Publications