EWM22780.1, cds7893 (CDS) Nannochloropsis gaditana

Overview
NameEWM22780.1
Unique Namecds7893
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:86337..86423 +
Alignment locationKK037247.1:86600..86763 +
Alignment locationKK037247.1:87051..87167 +
Alignment locationKK037247.1:87367..87458 +

Link to JBrowse

Properties
Property NameValue
End range.
End range87458
Protein idEWM22780.1
ProductNMT1/THI5-like protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101401g2.1530.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:86337..86423 +
KK037247.1supercontigKK037247.1:86600..86763 +
KK037247.1supercontigKK037247.1:87051..87167 +
KK037247.1supercontigKK037247.1:87367..87458 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR015168SsuA/THI5
Homology
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|585103391|gb|EWM22780.1| (NMT1/THI5-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 305.449 bits (781), Expect = 4.750e-105
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    1 MPILFQKDVTFMPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQRLLHQAVGSS 153
            MPILFQKDVTFMPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQRLLHQAVGSS
Sbjct:    1 MPILFQKDVTFMPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQRLLHQAVGSS 153          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|938302539|gb|KPQ36054.1| (ABC-type uptake system substrate-binding component [Phormidesmis priestleyi Ana])

HSP 1 Score: 75.0998 bits (183), Expect = 4.106e-13
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0
Query:   13 PRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVL----RGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSL 141
            P+  +  Q D++  + QFAGL++A  + L+  +G+D+ L     G V P    D VA             +GCAEQN+++ AQA GAP++ V+ M+  SPLGL  LP ++I +L +L  R  +VGM  D L++
Sbjct:   36 PQTSLTMQLDWKF-NVQFAGLLLAKGAELYADQGLDVTLMPWESGVVVP----DKVAA--------DPTVIGCAEQNLILAAQAAGAPIKAVATMFQASPLGLMTLPDAQIATLDDL--RGKKVGMHVDGLAV 153          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|495331561|ref|WP_008056299.1| (hypothetical protein [Arthrospira sp. PCC 8005] >gi|375324614|emb|CCE19962.1| conserved hypothetical protein [Arthrospira sp. PCC 8005] >gi|585308643|emb|CDM98466.1| conserved hypothetical protein [Arthrospira sp. PCC 8005])

HSP 1 Score: 74.7146 bits (182), Expect = 5.841e-13
Identity = 44/128 (34.38%), Postives = 76/128 (59.38%), Query Frame = 0
Query:   16 RVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQ 143
            ++  Q D++  ++QFAG+++A    L++S G    L  ++RPG  A +V    +   + G   +GC EQ+I++ AQ  G P++ ++ M+  SPLGL  +P S+I  L++L  +  RVGM  +S S+ Q
Sbjct:   41 KIIMQLDWKY-NAQFAGVLLADYYNLYKSSG----LAVEIRPGETAMIVT--NQVAKNPG--IIGCGEQDIIMNAQIAGQPIKAIATMFQNSPLGLMSMPNSQIYDLQDLIGK--RVGMEGESYSIMQ 157          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|1180096530|ref|WP_083616258.1| (hypothetical protein [Planktothrix paucivesiculata] >gi|1108760673|emb|CUR11669.1| conserved hypothetical protein [Planktothrix paucivesiculata PCC 9631])

HSP 1 Score: 73.9442 bits (180), Expect = 9.135e-13
Identity = 45/130 (34.62%), Postives = 72/130 (55.38%), Query Frame = 0
Query:    8 DVTFMPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLAD 137
            D+     P +  Q D++  + QFAGL++A   GL+Q RG    L+ ++ P +  +V   I E       L LGC EQ++++ AQ  G PV+ ++ M+  SPLGL  +P + I SL +L  +  +VG+  D
Sbjct:   35 DIIPTLTPHLTMQLDWKY-NVQFAGLLLADYYGLYQQRG----LKVEILPVNSQNVFEQIAE-----NPLILGCGEQDVILAAQVQGYPVKAIATMFQTSPLGLMSIPQNNIHSLNDLVGK--KVGIHGD 152          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|493672190|ref|WP_006622523.1| (MULTISPECIES: hypothetical protein [Arthrospira] >gi|209494122|gb|EDZ94437.1| NMT1/THI5 like domain protein [Arthrospira maxima CS-328] >gi|406714362|gb|EKD09528.1| hypothetical protein SPLC1_S180010 [Arthrospira platensis C1] >gi|1015660419|gb|AMW26781.1| hypothetical protein AP285_00995 [Arthrospira platensis YZ])

HSP 1 Score: 73.9442 bits (180), Expect = 1.002e-12
Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 0
Query:   16 RVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQ 143
            ++  Q D++  ++QFAG+++A    L++S G    L  ++RPG  A +V   Q A   +    +GC EQ+I++ AQ  G P++ ++ M+  SPLGL  +P S+I  L++L  +  RVGM  +S S+ Q
Sbjct:   41 QIIMQLDWKY-NAQFAGVLLADYYNLYKSSG----LAVEIRPGETAMIVTN-QVA---KNPAIIGCGEQDIIMNAQIAGQPIKAIATMFQNSPLGLMSMPNSQIYDLQDLIGK--RVGMEGESYSIMQ 157          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|1180105166|ref|WP_083624879.1| (hypothetical protein [Planktothrix serta] >gi|1108764263|emb|CUR19986.1| conserved hypothetical protein [Planktothrix serta PCC 8927])

HSP 1 Score: 73.1738 bits (178), Expect = 1.981e-12
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 0
Query:    8 DVTFMPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADS 138
            D+   P   +  Q D++  + QFAGL++A   GL+Q RG+++ ++         ++  GI E V +   L LGC EQ+ ++ AQ  G P++ ++ M+  SPLGL  LP   I SL +L  +  +VGM  ++
Sbjct:   28 DLNLSPTAPLIMQLDWKY-NVQFAGLLLADYYGLYQQRGLEVEIKS-------VNLHRGIFEQVAENP-LILGCGEQDAILAAQVQGYPIKAIATMFQASPLGLMSLPEKNIQSLHDLVGQ--KVGMQGNT 147          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|493667537|ref|WP_006617879.1| (hypothetical protein [Arthrospira platensis] >gi|291565826|dbj|BAI88098.1| putative secreted protein [Arthrospira platensis NIES-39] >gi|647981301|gb|KDR58233.1| hypothetical protein APPUASWS_006285 [Arthrospira platensis str. Paraca])

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 45/139 (32.37%), Postives = 80/139 (57.55%), Query Frame = 0
Query:   16 RVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQRLL-HQAVGSS 153
            ++  Q D++  ++QFAG+++A    L++S G    L  ++ PG  A +V      V +   + +GC EQ+I++ AQ  G P++ ++ M+  SPLGL  +P S+I  L++L  +  RV M  +S S+ Q ++ H  +GS 
Sbjct:   41 QIIMQLDWKY-NAQFAGVLLADYYNLYKSSG----LAVEILPGETAMIVTN---QVAENPAM-IGCGEQDIIMNAQIAGKPIKAIATMFQNSPLGLMSMPNSQIYDLQDLIGK--RVAMQGESYSIMQMVMGHNNIGSD 168          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|1160831838|ref|WP_079677636.1| (hypothetical protein [Planktothrix sp. PCC 11201] >gi|1152219089|emb|SKB11454.1| conserved hypothetical protein [Planktothrix sp. PCC 11201])

HSP 1 Score: 71.633 bits (174), Expect = 7.563e-12
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 0
Query:   15 PRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKEL 125
            P +  Q D++  + QFAGL++A    L+Q RG    L+ ++ P +  +V   I E       L LGC EQ++++ AQ  G PV+ ++ M+  SPLGL  +P + I SL +L
Sbjct:   43 PHLTMQLDWKY-NVQFAGLLLADYYNLYQQRG----LKVEILPANSQNVFEQIAE-----NPLILGCGEQDVILAAQVQGYPVKAIATMFQTSPLGLMSIPQNNIHSLNDL 143          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|1101224894|gb|OIP73132.1| (hypothetical protein AUK43_01285 [Oscillatoriales cyanobacterium CG2_30_40_61])

HSP 1 Score: 71.2478 bits (173), Expect = 1.044e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 0
Query:    8 DVTFMPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKEL 125
            D+     P +  Q D++  + QFAGL++A   GL++ RG+++    ++ P +  +V   I E       L LGC EQ+I++ AQ  G PV+ ++ M+  SPLGL  +P   I SL +L
Sbjct:   35 DIIPTSTPHLTIQLDWKY-NVQFAGLLLADYYGLYKQRGLNV----EILPVNSQNVFEQIAE-----NPLILGCGEQDIILAAQVQGYPVKAIATMFQTSPLGLMSIPEKNIHSLYDL 142          
BLAST of EWM22780.1 vs. NCBI_GenBank
Match: gi|1206271688|ref|WP_087882151.1| (hypothetical protein [Planktothrix rubescens])

HSP 1 Score: 69.3218 bits (168), Expect = 4.929e-11
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 0
Query:    8 DVTFMPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKEL 125
            D+     P +  Q D++  + QFAGL++A    L+Q RG    L+ ++ P S  +V   + E       L LGC EQ+ ++ AQ  G PV+ ++ M+  SPLGL  +P   I SL +L
Sbjct:   44 DIIPTSTPHLTMQLDWKY-NVQFAGLLLADYYKLYQQRG----LKVEILPASSQNVFEQMAE-----NPLILGCGEQDAILAAQVQGYPVKAIATMFQASPLGLMSIPEKNIHSLNDL 151          
The following BLAST results are available for this feature:
BLAST of EWM22780.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103391|gb|EWM22780.1|4.750e-105100.00NMT1/THI5-like protein, partial [Nannochloropsis g... [more]
gi|938302539|gb|KPQ36054.1|4.106e-1336.84ABC-type uptake system substrate-binding component... [more]
gi|495331561|ref|WP_008056299.1|5.841e-1334.38hypothetical protein [Arthrospira sp. PCC 8005] >g... [more]
gi|1180096530|ref|WP_083616258.1|9.135e-1334.62hypothetical protein [Planktothrix paucivesiculata... [more]
gi|493672190|ref|WP_006622523.1|1.002e-1235.16MULTISPECIES: hypothetical protein [Arthrospira] >... [more]
gi|1180105166|ref|WP_083624879.1|1.981e-1233.59hypothetical protein [Planktothrix serta] >gi|1108... [more]
gi|493667537|ref|WP_006617879.1|3.515e-1232.37hypothetical protein [Arthrospira platensis] >gi|2... [more]
gi|1160831838|ref|WP_079677636.1|7.563e-1236.04hypothetical protein [Planktothrix sp. PCC 11201] ... [more]
gi|1101224894|gb|OIP73132.1|1.044e-1134.75hypothetical protein AUK43_01285 [Oscillatoriales ... [more]
gi|1206271688|ref|WP_087882151.1|4.929e-1134.75hypothetical protein [Planktothrix rubescens][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7915rna7915Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications