rna7914, rna7914 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7914
Unique Name	rna7914
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	766
Alignment location	KK037247.1:84909..85966 -

Link to JBrowse

Properties


Property Name	Value
Product	methenyltetrahydrofolate cyclohydrolase
Orig transcript id	gnl\|cribi\|Naga_101401g1.1531.mrna
Orig protein id	gnl\|cribi\|Naga_101401g1.1531
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:84909..85966 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101401g1	gene7665	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7914	rna7914-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22781.1	cds7892	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:84909..85966-
coding sequence from alignment at KK037247.1:84909..85966-

mRNA sequence

>rna7914 ID=rna7914|Name=rna7914|organism=Nannochloropsis gaditana|type=mRNA|length=766bp
CCCAGTGATCGGCCGCTCCAAGTTCGTCGGTCTCCCCCTCGCGCTTCTCC
TTCTGGGCAGGGACGCCAGCGTGAGCATCGTCCACAGCAAGACACCGAAG
GAGGAGGTGGAGGCCTTGTGCCGGGAGTCGGACATTGTGGTGGGCGCGGT
GGGTATCCCACGCTTGATTCAACCGGGGTGGATCAAGAAAGGTATGGGGG
CCGGGCTGTGTGATGAGGATGGAGTGGGGCAATGATGCAGGTGGGGTTTG
TGATGGGGAAGGAGTGGGGCGATGAAGCAGGTGGGGGTTGTGATGGGGAA
GGAGTGAGGGATGAAGGGAGAAGGGCTTGTGATGAGGATGGAGTGGGGTG
ATGAAGCAGGTGGGGTTTGTGATGAGTATGGCGTGAGAAATGAAGGGAGA
GGGGCTTGTGATGAGGATGGAGTGAGAAATGAAGGAGGAGGGCTTGTGAT
GAGGTTGGAGTGGGGGGTGAAGGGAGAGGAGTGTGTGATGAGGATGGAGT
GGGGCGATGAAAATAGGAGTCGGGGCGATGGAATGAGAATGGAATGGGGC
GATGATGGAGGGATGAAGGGTTGTGATGGGGAGGGAGGGAGACATTATGC
CCGACGAAAAAGTGCGCTTCGAGGTGATGCGGATGGAGTGCAAAGGAGGA
AAGGACTAGGGGTAGGCAATGATGTAATTGGAGTCAAGTGGTGGAGAAGG
CGGAAAAGCAAGGAGGCGAGGAGAGTCTGGAGGAAAGCATGTCCCCCCAC
ATTTTTGTGTCCCTCC

protein sequence of rna7914

>rna7914-protein ID=rna7914-protein|Name=rna7914|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MPRGLPVASAMTAIQRVLGRSVLARTVALPHDRRLSIPVLRRKGSIMGYV
FPESSEEIYPPGNGPRILDGRMLSRRIRAGIKAQVKIFKEEHGYVPHLAI
ITVGERPPEEAER

mRNA from alignment at KK037247.1:84909..85966-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7914 ID=rna7914|Name=rna7914|organism=Nannochloropsis gaditana|type=mRNA|length=1058bp|location=Sequence derived from alignment at KK037247.1:84909..85966- (Nannochloropsis gaditana)
CCATTGTTGTCGTGCATGTTTCCACGGGCGGAGTCAACGCACTTCTTTTC
GGAGAGTTCCAGTCGGATAGTTTACGTTCCGCTATGCCCTCAGTGGAGCA
ACGGCTACACACAGAGCTGCACGCCTCAAAAATGGCCAGAAATCCCTCAA
TATGTGTCAGTGCATCGCATCTTTGTCCATTTCACAACAAGTTTAGGAGA
AATTTATGTTTTGTCCGGTCAAAGGGCGCACATTATTTCTTGTGACCGCG
GTAGACATGGCTACTGCTTGCGGAGACGAGCTAAAGCTTCTGTTTGTGGT
TAAAAATGTCATGCCTCTTGCTCGATACAAAACGCGTGCGATGACCCTCT
TCGCGCGCCTACCCTGCTCTTGGATGGCCAAGGAGGAGATTACCATGCAT
TCAAACGTGTAGCCGAGGCTGTCGCAAAGAACTTTCGTGCTTAGGTTCTG
CATGGCCAACCTTCTGAACGCCCTGTGATATTTGCCAGAGTACCACACCA
CAGAAGAAGGATCCACACAAACCCCTACACATTCTCCCATGCGACAATCC
ATCCCCTGCACAGCAACACGGCTTGAAAAGAGGTCTCAAGGGAGAATTAG
TGATGCCTCGGGGGTTGCCCGTCGCGTCTGCCATGACGGCCATCCAACGT
GTACTAGGTCGCAGCGTCCTTGCCCGTACCGTAGCCCTTCCCCATGACCG
GCGTCTCTCCATACCTGTGCTGCGTAGGAAAGGCAGCATAATGGGATACG
TCTTCCCAGAGTCGTCGGAAGAAATTTATCCCCCCGGCAATGGACCCAGG
ATTCTGGATGGACGCATGCTAAGTCGTCGCATCCGCGCAGGCATCAAAGC
TCAAGTAGGGCCCAGACCGCAATTCTCGTCTCATTTTTCCATGTCCTCCC
CACCATGGGCTCTTGTGCCATGCTCAAGAAGTCCTTTTCCCTCTGTTCCT
TTCTCCCGCCCTCGCTAGGTAAAGATTTTCAAGGAAGAACACGGCTATGT
ACCTCACTTGGCAATCATCACGGTGGGAGAGCGACCGCCAGAAGAAGCGG
AGCGGTAA

Coding sequence (CDS) from alignment at KK037247.1:84909..85966-

>rna7914 ID=rna7914|Name=rna7914|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at KK037247.1:84909..85966- (Nannochloropsis gaditana)
GTAAAGATTTTCAAGGAAGAACACGGCTATGTACCTCACTTGGCAATCAT
CACGGTGGGAGAGCGACCGCCAGAAGAAGCGGAGCGGTAAATGCCTCGGG
GGTTGCCCGTCGCGTCTGCCATGACGGCCATCCAACGTGTACTAGGTCGC
AGCGTCCTTGCCCGTACCGTAGCCCTTCCCCATGACCGGCGTCTCTCCAT
ACCTGTGCTGCGTAGGAAAGGCAGCATAATGGGATACGTCTTCCCAGAGT
CGTCGGAAGAAATTTATCCCCCCGGCAATGGACCCAGGATTCTGGATGGA
CGCATGCTAAGTCGTCGCATCCGCGCAGGCATCAAAGCTCAAGTAAAGAT
TTTCAAGGAAGAACACGGCTATGTACCTCACTTGGCAATCATCACGGTGG
GAGAGCGACCGCCAGAAGAAGCGGAGCGGTAAATGCCTCGGGGGTTGCCC
GTCGCGTCTGCCATGACGGCCATCCAACGTGTACTAGGTCGCAGCGTCCT
TGCCCGTACCGTAGCCCTTCCCCATGACCGGCGTCTCTCCATACCTGTGC
TGCGTAGGAAAGGCAGCATAATGGGATACGTCTTCCCAGAGTCGTCGGAA
GAAATTTATCCCCCCGGCAATGGACCCAGGATTCTGGATGGACGCATGCT
AAGTCGTCGCATCCGCGCAGGCATCAAAGCTCAA

Synonyms

Publications