rna7912, rna7912 (mRNA) Nannochloropsis gaditana

Overview
Namerna7912
Unique Namerna7912
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2164
Alignment locationKK037247.1:82219..83323 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100958g2.9902.mrna
Orig protein idgnl|cribi|Naga_100958g2.9902
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:82219..83323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100958g2gene7663Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22783.1cds7890Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7912rna7912-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7912 ID=rna7912|Name=rna7912|organism=Nannochloropsis gaditana|type=mRNA|length=2164bp
AAAGTGCACACCATGTAGCCGGAAAAAACAAAACAAACCTGGTCTATCGC
ATCCCTATTCCTAATATCGACGGAAGCATCCACATATTGAACTGATTTTA
AAGGCTGCACCAAAAAATGATTCGGTACAGGGTGCACTATTTCTCATACT
CTTCCTTGTGTTGGTCTGCTTCGCTGCAGCGGTAGCTTTTGCTATGCTGT
GCTTGTCCCCTACTTTTGACCGGAAAGGGGAAGCAGACGAATCCTTCCAT
TTGATAGTTATTGACAAGCGAATTCAAAAGCTTGTGATAGGAGAAACGAG
ACAATTTACCACACAAATGCGGGTGACATCATGTAGAAAAAGGAAAACAA
GGTTGCCGTTACCGGGGTCGTGTTTTTCCTTCTTCCAGATCTCTTTCACA
GCCGTGAACGGGCAAGAGGGTGGCCCACTTTACGAGCAGGAGACTTCCAA
ATGCGCGGCAGCCGTTTTGGTGTTCATCTCACCATCACTTGGCAGCGATG
ACAACCCGAAGTCGGGCGGAAGGGTTGCTGGAGCCTTCGGGGGAACGCAC
CCCCTATAAAAAATGCGGGTCCTGCCAGCTTGCTGCGTCTTATCCGGGGC
GGTGGCGGCCGTGGCGGCCTCGTCCCTTCGAGGTACGCTCCAATGGCTCT
TTGTATACATTTTATGGGGGATTCCTCCTTGCTGCTTCGTGACTCCTACT
CACACTTCGCTCTACTCTCCTCCCGAACAGAGGCCGCCTTCGTCGCTCCC
TGCCTCCCTTCCTCCCCCCCTTCCTCCCTCCTACCCTCCACCCTGTCGCG
TCCACCACGCACCATGTTGACCATGACGAAGGCTGATGGGGAACAAGGGA
AGAAACGTGCCAAGAACGTGGGAGGCACATGGATCGGGCGGGTGGCTCAA
GGCGTGAGCACTGCGGCCATGCTGGCCTTTCCATCCAATCTCATGATTGC
CCCGGTCGTCGACGGCCCCCAATCCCTCTCCTTCACCCTCGCCCCTTCCC
GGGCCAACGCCGCGGAGGCAGTGGCGGAAAAGAGCGACTTGAAGAGTTTG
CTGTCGGATTACTCCACCACGGTCTCCAAGAAGGAAGAAGAAGCGAAAGC
AGCAGAAGCGGCCGCGGCGCAGAAAGCGGCGACCCCTCCCCCTGCTCCGA
CCAAGAAGCCGGCGCCCGCCCCGGCACGCACCCCTTCTCCTTCCCCTAAA
CCCAAAGCCACGCCCAAACCTGCGCCGGCACCTCCTGCGGCTGCCCCTCC
CGCGGTCGCGCCACCCGCTGCATCGCCCCCTGCCGTCCCTCCTCCTTCTC
CTTCCCCCCCCTCCCCGCCCCCTGCTCCCAAATCTGCTCCCAAACCCGCC
GTGAAGAAAGCTGCTGCCCCCTCAGCAGCGGCGACGGCAGAAGCCAAGCG
CGCCAAGGAACTGGCGAAGCAAAAAGCGGAAGCAGCCGCCAAAGCGGCTG
CGGACAAAGTAGCGGCCGAAGAGAAAGCGAAGGAGGACGCCCGTGCTGCA
TTTGTGAAGCAGTTGAACGAAAAACGGGAGAAATTTGGCCTGGCCCCGTC
CAAAACCATGGTCGCACCCAAGGTCATCGCACCCGCCTCTCGGGCTCCTG
TCCAGAAAGCCGTCGACCTCCTCCCGGAAGAGAAGCAGCTTCAGGCCTTC
CAAGAGAAAGAGAAGACTCTCGCCGCGTCCTTGAAGACCCTCAAGGCGGA
GGTTGCCAACACGGAGAAGGAGCTTAAAAAGGCGACGGCGGCGGAGACGG
TAGGGAAGGGGAGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGCCGGG
GGACGTTCTCCACTGCCGAGCTTGCATCTACCTTAAACCGACGGATCTTT
TCCTTTCCCGCCCTTCCTTTGTTTTTTCCCGCGCAGGCGGACAAGCGACA
GGTGGACAAGCTCGAGAAGAAAGCCCGAAAAGCCCGAGGCAAAGAGGCGA
AGGACGCGACGAAAGCCGCCAAGAAGGAAGGGGAGAAGGTGTTGAAGGCG
GCGCAGCAGGAGAAACGCGGCCTGGAAAAAGCTGTTAAGCAGGGGAAGAC
CAAAGTGGAAAAGGCGAAAAAGGAGCTGCAGGCGGCGGGGAAGAGGGTGG
AGGGGCAGCGACGGGCGGTGACCAAGAGGAAGGGGGAGGTGGCGAAGAAG
TGCGTGGGAGGGAG
back to top

protein sequence of rna7912

>rna7912-protein ID=rna7912-protein|Name=rna7912|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MTLVRRMWKVVKKKERLSGAHVVPGYGTCGGKEKRERSMIVKVGVVFKRA
RSMQTGPKRAPAWPISGCFGGEAKEDLKVTIEKLRDSNGPHSEMVTVETT
back to top

mRNA from alignment at KK037247.1:82219..83323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7912 ID=rna7912|Name=rna7912|organism=Nannochloropsis gaditana|type=mRNA|length=1105bp|location=Sequence derived from alignment at KK037247.1:82219..83323- (Nannochloropsis gaditana)
CACTGATGTTGCTCGATCCAGACAAGCTTTATCGCCTGCCCCTTCCTTTG
CCACTTTCCTCCGTCTGAACCCTCCCTTCCGCCCTCCCTCCCTCTTACCC
TCCCTCCCTCCCTCCCTCCTCAGACCCTCTCGATCACCCGCCATAAATCC
ACCGATGGCACCCTCTGGTGCGACAACGACTGTCCCTCAGACTTGAACGT
GGAGCTCTACTCCGCCGCCGTACAGGTAAATTGGGGGAGGGAGGCATCCC
TAGAGGCGCCGTCTCGCCGCGTGATAATGAATATAATAAGGGGGACAAAA
AACTTTTACATGAACGTCGATTTAAATCATCGACTCCTTCTTCTTCTCTC
CTCCCCTCCCTCCCTCCCTCCTTCTCGGTAGGACCTCACTCATTTCGACA
TCACGCAAGCGCGGAGCCTGTCCACCCTGTCCTGCGAAGGTCCTCAACCC
AAAAAGTACAAAGAAGGGGACTGATGAGCAGGGAAAGAGGGAGGGAAAGA
GGGAGGGAAAGAGGGAGGGAAAGAAAGAGGATGGGAAGGAGAAGACGTGC
GAGAGGAGACTTTTTCACAAGGGAAGGTCAAGAAGGCAAGGGATGGAGAA
GTTGGTAAAAAGGCGCGAAAAAGGCTGAAAATAACAATGACGCTCGTAAG
GAGAATGTGGAAGGTAGTGAAAAAGAAAGAACGATTGAGTGGAGCGCACG
TGGTCCCAGGTTACGGAACATGTGGTGGGAAGGAGAAGCGGGAACGTTCA
ATGATCGTAAAGGTAGGGGTAGTATTTAAAAGGGCGCGAAGCATGCAAAC
GGGTCCAAAAAGGGCCCCAGCCTGGCCAATCAGTGGCTGTTTCGGGGGGG
AAGCGAAGGAGGATCTCAAAGTAACGATTGAAAAACTCCGAGACAGTAAT
GGTCCACACTCCGAGATGGTAACGGTCGAGACCACCTGAGCATGTGTTGG
AGAACTTCGAAAATTTTGAACATGCATTGATAAAACCAGCGATTGGTTTG
AGACGAATATGTAGCATCGGCTATTTGACAGTTGACACTTTTTGCTTTTT
GGATGGTGGTTTTACGCGCCCGTTGTGCGAGGCCTGCGAAAATATTGCTT
ATTGA
back to top

Coding sequence (CDS) from alignment at KK037247.1:82219..83323-

>rna7912 ID=rna7912|Name=rna7912|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at KK037247.1:82219..83323- (Nannochloropsis gaditana)
ATGACGCTCGTAAGGAGAATGTGGAAGGTAGTGAAAAAGAAAGAACGATT
GAGTGGAGCGCACGTGGTCCCAGGTTACGGAACATGTGGTGGGAAGGAGA
AGCGGGAACGTTCAATGATCGTAAAGGTAGGGGTAGTATTTAAAAGGGCG
CGAAGCATGCAAACGGGTCCAAAAAGGGCCCCAGCCTGGCCAATCAGTGG
CTGTTTCGGGGGGGAAGCGAAGGAGGATCTCAAAGTAACGATTGAAAAAC
TCCGAGACAGTAATGGTCCACACTCCGAGATGGTAACGGTCGAGACCACC
TGA
back to top
Synonyms
Publications