rna791, rna791 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna791
Unique Name	rna791
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1412
Alignment location	CM002456.1:428508..429915 -

Link to JBrowse

Properties


Property Name	Value
Product	s-adenosylmethionine-dependent methyltransferase domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100106g3.1439.mrna
Orig protein id	gnl\|cribi\|Naga_100106g3.1439
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:428508..429915 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100106g3	gene757	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna791	rna791-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29865.1	cds791	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:428508..429915-
coding sequence from alignment at CM002456.1:428508..429915-

mRNA sequence

>rna791 ID=rna791|Name=rna791|organism=Nannochloropsis gaditana|type=mRNA|length=1412bp
CTCTGGCTTTGACTTCTTTGGGCCCTGTATTCGCACTTGCCACTGCAAGT
TCTGGTTTTGGCACGAAAAATACCGTGTGTGTGAGGATGAGGGTTGCGAT
TGATTTCTTTCGCGTTGGACGGAGGCGCTCTCATCACAACGTCTCCCTCC
AGCCACACACGCCCTCTTCGCTGTCTTTCACCTCCATCCCACCCTCTTAA
TTAACGCGTTCCTAAACCATTCCTTCGCATACCACATTCTTGACACACGT
AAAATTTCACAGTGCGCGATACTTCTGAATTGGTTGCTCCGCCGTAATCA
ATCATGGCGCGCGGTCCAAAGAAGCATCTCAAGCGGGTCAATGCCCCCCG
GCACTGGATGCTGTCCAAAATGGACGGCATCTTCGCCCCTCGTCCGTCCA
CCGGCCCGCACAAACTTCGAGAATCTCTTCCCCTCATTCTCATCCTTCGT
AACCGGCTCAAGTACGCCTTGACCAAGGCCGAAGCCAATGCAATTTGCAT
GCAAAAACTAGTCAAAGTTGACGGGAAGGTGCGAACTGACCTGAACTTCC
CTGCCGGCTTCATGGATGTGATCACCATCGAGAAGTCTGGGGATGAGTTC
CGTCTGCTCTACGATGTGAAAGGGCGCTTCTACCTGCAACGCTTGGAGGA
GGGCTCAGAGGAGCGAAATTTCAAGCTGTGCCGCGTGAACAAGAACGAAA
TGTCGGCCAATAAGATTCCCTACATTGTCACACACGATGGGCGCACCATC
CGGTACCCCGACCCTTTGATCAAGATGGACGACACGGTTAAGGTCGACAT
CCGCACCGGAAAGATCCTGGATTTCATCAAGTTCGATCTGGGCAATTTGG
TATATCTGACCCGCGGGCATAACACGGGGAGGGTAGGGATGATCCAGCAC
ATCGAGCGCCACCCGGGGTCCTTTGACATCATTACGGTCAAGGATGCGCA
GGGCCACACGTTTGCCACGCGCCGACAAAATGTGTTTGTTATCGGACAGG
GCAACAAGCCCATGGTCTCGTTACCGAAGGGGAAAGGCATCAAACTTTCG
ATCGTGGAGGAGCGGAGCGCGAGGAAGGGGCAGTAAGATGGGGGAAGGAG
GGTAGGGGGACGCCGGGACGGGGGGGACGAGTCTAGGAGCCGGGGTCAGT
ATTTGTTATGCTCTCGGCAGTAATGGCTCAGGTGCCTAGACTCATTGTTC
TTGTGGTGTGAGAATAACGGGGGATCGTAGTCACAGGACGCTTGGTCAGT
TGGCACGGTGCTTGCCTACCTCTCTCACGGACGGACATGGAGGAGGTTGA
AAGGAACTCATTGACACCAAAAAGAAATAGGGGACGAGTTGACGTCATCG
ATCGCGACCCTGTCGAGCGCCATGTGAAAGTTCTCATTCATTTGACCCAG
GCCGCGTGAGCC

protein sequence of rna791

>rna791-protein ID=rna791-protein|Name=rna791|organism=Nannochloropsis gaditana|type=polypeptide|length=395bp
MWCLISCSTRTGGPPPTSSPSQHSHPHRQTHPFQAVDAMIRSRISARRKI
NHSLLCVAGCLFLDCNVVTKGIPVAALLLSPVPVIANIYPAFTHASPSLQ
RQARRPQAKHFCPLLSAHLRPERTMGKRGSRGNEQAEGKQKVASGEEVSR
LSRRESFLPALIALGSGALLLNKSLNEERAYEGLHQELFALLSASASGAG
EAGRDVRAPKVLEIGVGQGVNVKYYPSGCEVVGLDPNLNQDAMSVAQSKA
KARNIQWSALEGRAESLPFPDASFDAVVSTLVFCSVQDQARALTEVARVL
RPGGKFLFVEHIWAGEKEHPVLHRVQGIMDPLQAFLVNGCHLVRHTDDLL
LGETKGGGGRDREGVKLFDRVERLNYLEMDTQWPVSVQVAGVLVK

mRNA from alignment at CM002456.1:428508..429915-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna791 ID=rna791|Name=rna791|organism=Nannochloropsis gaditana|type=mRNA|length=1408bp|location=Sequence derived from alignment at CM002456.1:428508..429915- (Nannochloropsis gaditana)
ATGTGGTGTTTAATATCCTGCTCTACCCGTACAGGCGGCCCCCCGCCCAC
CTCTTCACCATCCCAGCATTCACATCCACACCGCCAAACACACCCCTTTC
AGGCTGTAGATGCCATGATTCGGTCAAGGATATCTGCACGACGAAAGATC
AATCATTCCCTCCTTTGCGTCGCCGGATGTCTCTTCCTCGATTGTAATGT
CGTCACGAAGGGTATTCCCGTAGCTGCACTCCTCCTCTCGCCAGTTCCTG
TCATCGCCAATATTTACCCCGCTTTCACACATGCTTCGCCGTCACTACAG
CGGCAAGCGAGGAGGTATGCCGGTTTTTCCTCCCCCCCCCCGTGCTTGTC
TCTCTCCATCCCCCGCGTGCCCCCCTCTTCCTCCGCCGCCTAACTCCCAT
CCCCTTGTTCCAGGCCCCAAGCGAAGCATTTTTGCCCGCTTCTCTCCGCA
CACCTACGTCCCGAACGCACTATGGGCAAGCGCGGAAGCCGTGGAAACGA
ACAGGCCGAGGGCAAGCAGAAGGTCGCGTCGGGCGAGGAAGTCTCCCGGC
TCAGTCGCCGGGAAAGTTTCCTCCCGGCCCTTATTGCCCTCGGGAGCGGC
GCCCTTCTCCTAAACAAGTCCTTGAACGAGGAGCGGGCCTACGAGGGATT
GCACCAGGAGCTTTTTGCTCTCTTGTCGGCAAGCGCGTCCGGTGCGGGAG
AGGCGGGGAGGGATGTCCGGGCGCCGAAGGTGCTCGAGATCGGGGTGGGA
CAGGGGGTGAATGTGAAGTACTATCCCTCCGGCTGCGAAGTGGTGGGCCT
GGACCCAAACCTTAATCAAGATGCAATGAGCGTCGCACAGGTAAGATGGA
CGTATTCCTACTTCTTGGTATCGGCGGGAATGACGGTGATAGGCATGAGG
AGGGCCACTCATATTTTTTGCCTTCCGCCTCCCTTGCTGGTCCCTTTCTT
TTCTCTCTCAGTCCAAAGCCAAAGCGCGCAACATCCAGTGGAGCGCCTTG
GAGGGAAGGGCGGAATCGCTCCCGTTTCCGGACGCTAGCTTCGACGCGGT
CGTCTCCACCTTGGTGTTCTGTTCGGTGCAAGACCAGGCTCGGGCTTTGA
CGGAAGTCGCGCGTGTTTTGCGGCCGGGGGGGAAGTTCCTGTTCGTCGAG
CACATATGGGCGGGAGAGAAGGAGCACCCCGTGCTCCACCGGGTACAAGG
GATCATGGACCCGCTCCAGGCCTTCCTGGTCAACGGCTGCCACCTCGTCC
GGCACACGGACGATCTGCTTCTAGGAGAGACCAAGGGAGGGGGTGGAAGG
GACAGGGAAGGGGTCAAGTTGTTCGATCGGGTGGAGCGTTTGAACTACTT
AGAGATGGACACTCAATGGCCTGTCAGCGTGCAAGTGGCGGGGGTGCTGG
TCAAGTGA

Coding sequence (CDS) from alignment at CM002456.1:428508..429915-

>rna791 ID=rna791|Name=rna791|organism=Nannochloropsis gaditana|type=CDS|length=3564bp|location=Sequence derived from alignment at CM002456.1:428508..429915- (Nannochloropsis gaditana)
TCCAAAGCCAAAGCGCGCAACATCCAGTGGAGCGCCTTGGAGGGAAGGGC
GGAATCGCTCCCGTTTCCGGACGCTAGCTTCGACGCGGTCGTCTCCACCT
TGGTGTTCTGTTCGGTGCAAGACCAGGCTCGGGCTTTGACGGAAGTCGCG
CGTGTTTTGCGGCCGGGGGGGAAGTTCCTGTTCGTCGAGCACATATGGGC
GGGAGAGAAGGAGCACCCCGTGCTCCACCGGGTACAAGGGATCATGGACC
CGCTCCAGGCCTTCCTGGTCAACGGCTGCCACCTCGTCCGGCACACGGAC
GATCTGCTTCTAGGAGAGACCAAGGGAGGGGGTGGAAGGGACAGGGAAGG
GGTCAAGTTGTTCGATCGGGTGGAGCGTTTGAACTACTTAGAGATGGACA
CTCAATGGCCTGTCAGCGTGCAAGTGGCGGGGGTGCTGGTCAAGTGAGCC
CCAAGCGAAGCATTTTTGCCCGCTTCTCTCCGCACACCTACGTCCCGAAC
GCACTATGGGCAAGCGCGGAAGCCGTGGAAACGAACAGGCCGAGGGCAAG
CAGAAGGTCGCGTCGGGCGAGGAAGTCTCCCGGCTCAGTCGCCGGGAAAG
TTTCCTCCCGGCCCTTATTGCCCTCGGGAGCGGCGCCCTTCTCCTAAACA
AGTCCTTGAACGAGGAGCGGGCCTACGAGGGATTGCACCAGGAGCTTTTT
GCTCTCTTGTCGGCAAGCGCGTCCGGTGCGGGAGAGGCGGGGAGGGATGT
CCGGGCGCCGAAGGTGCTCGAGATCGGGGTGGGACAGGGGGTGAATGTGA
AGTACTATCCCTCCGGCTGCGAAGTGGTGGGCCTGGACCCAAACCTTAAT
CAAGATGCAATGAGCGTCGCACAGATGTGGTGTTTAATATCCTGCTCTAC
CCGTACAGGCGGCCCCCCGCCCACCTCTTCACCATCCCAGCATTCACATC
CACACCGCCAAACACACCCCTTTCAGGCTGTAGATGCCATGATTCGGTCA
AGGATATCTGCACGACGAAAGATCAATCATTCCCTCCTTTGCGTCGCCGG
ATGTCTCTTCCTCGATTGTAATGTCGTCACGAAGGGTATTCCCGTAGCTG
CACTCCTCCTCTCGCCAGTTCCTGTCATCGCCAATATTTACCCCGCTTTC
ACACATGCTTCGCCGTCACTACAGCGGCAAGCGAGGAGTCCAAAGCCAAA
GCGCGCAACATCCAGTGGAGCGCCTTGGAGGGAAGGGCGGAATCGCTCCC
GTTTCCGGACGCTAGCTTCGACGCGGTCGTCTCCACCTTGGTGTTCTGTT
CGGTGCAAGACCAGGCTCGGGCTTTGACGGAAGTCGCGCGTGTTTTGCGG
CCGGGGGGGAAGTTCCTGTTCGTCGAGCACATATGGGCGGGAGAGAAGGA
GCACCCCGTGCTCCACCGGGTACAAGGGATCATGGACCCGCTCCAGGCCT
TCCTGGTCAACGGCTGCCACCTCGTCCGGCACACGGACGATCTGCTTCTA
GGAGAGACCAAGGGAGGGGGTGGAAGGGACAGGGAAGGGGTCAAGTTGTT
CGATCGGGTGGAGCGTTTGAACTACTTAGAGATGGACACTCAATGGCCTG
TCAGCGTGCAAGTGGCGGGGGTGCTGGTCAAGTGAGCCCCAAGCGAAGCA
TTTTTGCCCGCTTCTCTCCGCACACCTACGTCCCGAACGCACTATGGGCA
AGCGCGGAAGCCGTGGAAACGAACAGGCCGAGGGCAAGCAGAAGGTCGCG
TCGGGCGAGGAAGTCTCCCGGCTCAGTCGCCGGGAAAGTTTCCTCCCGGC
CCTTATTGCCCTCGGGAGCGGCGCCCTTCTCCTAAACAAGTCCTTGAACG
AGGAGCGGGCCTACGAGGGATTGCACCAGGAGCTTTTTGCTCTCTTGTCG
GCAAGCGCGTCCGGTGCGGGAGAGGCGGGGAGGGATGTCCGGGCGCCGAA
GGTGCTCGAGATCGGGGTGGGACAGGGGGTGAATGTGAAGTACTATCCCT
CCGGCTGCGAAGTGGTGGGCCTGGACCCAAACCTTAATCAAGATGCAATG
AGCGTCGCACAGATGTGGTGTTTAATATCCTGCTCTACCCGTACAGGCGG
CCCCCCGCCCACCTCTTCACCATCCCAGCATTCACATCCACACCGCCAAA
CACACCCCTTTCAGGCTGTAGATGCCATGATTCGGTCAAGGATATCTGCA
CGACGAAAGATCAATCATTCCCTCCTTTGCGTCGCCGGATGTCTCTTCCT
CGATTGTAATGTCGTCACGAAGGGTATTCCCGTAGCTGCACTCCTCCTCT
CGCCAGTTCCTGTCATCGCCAATATTTACCCCGCTTTCACACATGCTTCG
CCGTCACTACAGCGGCAAGCGAGGAGTCCAAAGCCAAAGCGCGCAACATC
CAGTGGAGCGCCTTGGAGGGAAGGGCGGAATCGCTCCCGTTTCCGGACGC
TAGCTTCGACGCGGTCGTCTCCACCTTGGTGTTCTGTTCGGTGCAAGACC
AGGCTCGGGCTTTGACGGAAGTCGCGCGTGTTTTGCGGCCGGGGGGGAAG
TTCCTGTTCGTCGAGCACATATGGGCGGGAGAGAAGGAGCACCCCGTGCT
CCACCGGGTACAAGGGATCATGGACCCGCTCCAGGCCTTCCTGGTCAACG
GCTGCCACCTCGTCCGGCACACGGACGATCTGCTTCTAGGAGAGACCAAG
GGAGGGGGTGGAAGGGACAGGGAAGGGGTCAAGTTGTTCGATCGGGTGGA
GCGTTTGAACTACTTAGAGATGGACACTCAATGGCCTGTCAGCGTGCAAG
TGGCGGGGGTGCTGGTCAAGTGAGCCCCAAGCGAAGCATTTTTGCCCGCT
TCTCTCCGCACACCTACGTCCCGAACGCACTATGGGCAAGCGCGGAAGCC
GTGGAAACGAACAGGCCGAGGGCAAGCAGAAGGTCGCGTCGGGCGAGGAA
GTCTCCCGGCTCAGTCGCCGGGAAAGTTTCCTCCCGGCCCTTATTGCCCT
CGGGAGCGGCGCCCTTCTCCTAAACAAGTCCTTGAACGAGGAGCGGGCCT
ACGAGGGATTGCACCAGGAGCTTTTTGCTCTCTTGTCGGCAAGCGCGTCC
GGTGCGGGAGAGGCGGGGAGGGATGTCCGGGCGCCGAAGGTGCTCGAGAT
CGGGGTGGGACAGGGGGTGAATGTGAAGTACTATCCCTCCGGCTGCGAAG
TGGTGGGCCTGGACCCAAACCTTAATCAAGATGCAATGAGCGTCGCACAG
ATGTGGTGTTTAATATCCTGCTCTACCCGTACAGGCGGCCCCCCGCCCAC
CTCTTCACCATCCCAGCATTCACATCCACACCGCCAAACACACCCCTTTC
AGGCTGTAGATGCCATGATTCGGTCAAGGATATCTGCACGACGAAAGATC
AATCATTCCCTCCTTTGCGTCGCCGGATGTCTCTTCCTCGATTGTAATGT
CGTCACGAAGGGTATTCCCGTAGCTGCACTCCTCCTCTCGCCAGTTCCTG
TCATCGCCAATATTTACCCCGCTTTCACACATGCTTCGCCGTCACTACAG
CGGCAAGCGAGGAG

Synonyms

Publications