rna7905, rna7905 (mRNA) Nannochloropsis gaditana

Overview
Namerna7905
Unique Namerna7905
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length999
Alignment locationKK037247.1:63123..64445 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF926
Orig transcript idgnl|cribi|Naga_100349g6.4133.mrna
Orig protein idgnl|cribi|Naga_100349g6.4133
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:63123..64445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100349g6gene7657Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7905rna7905-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22787.1cds7883Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7905 ID=rna7905|Name=rna7905|organism=Nannochloropsis gaditana|type=mRNA|length=999bp
CAGCACCATCTCCACAAATCGTCAACTATACTCCCCATTTCACGATGTAT
GACATCCCGGGACAGGTAGAACCACAGCGGCGGTCACTTTTTCGGCATGT
CTCCGCCTCCGTCGCCGGGGGCGCGTGGGAAACGCAAGGAAAGGAGCGTA
TCATTGTCCTCGGAAAGAGGAGGAAATGGAGCCGCACGAATCCAGAAGAC
ACACCACGGACACCACAAAAAAAGGAAAAGTGAAGAACGGGACGAAAGGG
GCCGGAATGGGCGGCAGCGGCGCGGGGAAAATGGTAGAAACGAGGATGAC
AATAACCGACGTGAGGAAGAGGAAGACGAGTTTGGGCGGGGGGAAAGAGG
GCGAGGGGATCGAAGGCGGGAGGGAAGGAGGAGGAGCGAGAGCGAGGGGC
AAGGTGGAGGTTGGAGGGGGGGGAGAAGGAGGAGTGAGAGCGAGGAGAGG
GGAAGAGAGGGGAGGAGGGAGGCACGGGAAAGGCGTAGCAGGAGTCGCAG
TCCTCGGAGAGGGTATGAAGGGTCCGGCCGACCTCATTCTCCCCCCACGC
GGCGGCAATTGGAACGAGAGCGGGAGGCACGCCAGGGACAGGGAAGGTGG
GAGGGTGTGCGGGAAGGGAATGAAGGCCGGGAAGGACGGAGGTCGCGATG
GGAAGCAGGCAATGGGGGAGGAGTAGAAAGAGGGGCCACGGCCTTGCCCG
GAGAGACCTACGAGGAATTTCGGTTGCGACGACGCCGAGAGCTCGGGGAG
GAGTCGGCGGTGGATGTCTGGGCACGTTCGCCCTCCCCCCCGACGAGGAG
TGAGGGGAGGGCCAAGGCGGGCGGGAAGGAGGGGGCTTTGAAGAAGAAGG
AGCACGGGAGGGAAGGGAAAAAGGTGGAGAAGAAGACGGGTTCGAAGAGG
AGGAAAAAGAAGCCACGGAGTCCCTCTCCCTCCTCCTCTTCCTCCTCTTC
CTCCTCTTCCTCCTCCTCCTCTTCGTCGTCGACCTCCTCCTCCTCCTCT
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protein sequence of rna7905

>rna7905-protein ID=rna7905-protein|Name=rna7905|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALE
KKALALIQLEENKQKEATLLANFRQALEKRKEKEGEGENVDEV
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mRNA from alignment at KK037247.1:63123..64445+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7905 ID=rna7905|Name=rna7905|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp|location=Sequence derived from alignment at KK037247.1:63123..64445+ (Nannochloropsis gaditana)
CGGATGGCGTACGGGGAGGTCTCAGCATTGGCTCCTGACGCGTTCTCATT
CGCTTTCCTTGCTTGCCTGACAGGGGGGATGACGAcagcgaggatgagga
aatGGGACCCCGCCCGCTGGACGatggaatggagggagggagggagggag
gccagggccggAGTTTCGGAGGGGCGTTGAtgccgggggaggtgagggag
ggatggagggggggagggatggagggaaggaagggaaggggtaTGGGATA
TTAAGTCAAGCCGTGGATGGGGAATCATTATTCATTCGGCCACGGATCTC
CTCATCCaattctccctttcctccctctctccctcccgccctcccttgaT
CCCTTCCTCAGGGCGAGGCCATCGCCCAGTACGCAGAGAAGAACATGCGC
ATCCCTCGGCGAGGGGAGGTAGgatggcagggggaggagatcgagCGCTT
GGAGTCTTTGGGTTACGTGATGAgtggtaaggagggagggaggaagggag
ggagggagggagagagggagggagggaaggagggaaggagggtgggatgg
agCAATAGCCGCCGTTTTTATAAAAAGCGAGGCCGTCGaacggggaaaga
gaaaaggagtcGGTTAAATCTACGATGAAATGGATGAATGTGGAGGCCct
tgtctctttctcctcatgtttcctctcccccttcccccttcccaggCAAC
CGGCACAAGCGGATGAACGCCATTCGTATCCGCAAAGAGAACCAGGTGCG
TCATGCCTCTGTGTTCCTATTCTCTCGCGGGGACATCCGCCCACTACCCT
CCATGTTTTgatgcttcttctttttcctccggcccatggatcctttttcc
ctcttgggGCTGTAAATTATACCTTTGTCCCTGTCTGGGTTGAGCTTAAA
CCCCACTCTTGTATTCCTGTCCACCTCACTGGAACTCTGCTTTTTTTCAC
TCTCCACTTCTTAGGTCTATACAGccctggagaagaaggctttAGCGCTC
ATTCAGCTCGAGGAGAACAAACAGAAGGAAGCGACCTTACTGGCAAATTT
CCGACAAGCATTGGAAAAgcggaaagagaaagagggggagggggaaaatg
tggATGAGGTTTGAATGGAAGACATGTGCACAAGTGATTGATGAAGGGTG
GTAGAAGGGTAAGGCGATAGGGATGCTGAACGGTTTGGAGGTAGCACCAC
CTCGACCGAATGCAGATCCGTGAGCTTTAGATAGCCATGAAAGAAAAGTG
CGAATTGTCTTGGCACGTTTTACGACGTAGCGTCTTTGTAGCCTTTGATT
ATTTCTTTAAGTGACGCATGAGC
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Coding sequence (CDS) from alignment at KK037247.1:63123..64445+

>rna7905 ID=rna7905|Name=rna7905|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at KK037247.1:63123..64445+ (Nannochloropsis gaditana)
ATGCGCATCCCTCGGCGAGGGGAGGTAGgatggcagggggaggagatcga
gCGCTTGGAGTCTTTGGGTTACGTGATGAgtggCAACCGGCACAAGCGGA
TGAACGCCATTCGTATCCGCAAAGAGAACCAGGTCTATACAGccctggag
aagaaggctttAGCGCTCATTCAGCTCGAGGAGAACAAACAGAAGGAAGC
GACCTTACTGGCAAATTTCCGACAAGCATTGGAAAAgcggaaagagaaag
agggggagggggaaaatgtggATGAGGTTTGAATGCGCATCCCTCGGCGA
GGGGAGGTAGgatggcagggggaggagatcgagCGCTTGGAGTCTTTGGG
TTACGTGATGAgtggCAACCGGCACAAGCGGATGAACGCCATTCGTATCC
GCAAAGAGAACCAGGTCTATACAGccctggagaagaaggctttAGCGCTC
ATTCAGCTCGAGGAGAACAAACAGAAGGAAGCGACCTTACTGGCAAATTT
CCGACAAGCATTGGAAAAgcggaaagagaaagagggggagggggaaaatg
tggATGAGGTTTGAATGCGCATCCCTCGGCGAGGGGAGGTAGgatggcag
ggggaggagatcgagCGCTTGGAGTCTTTGGGTTACGTGATGAgtggCAA
CCGGCACAAGCGGATGAACGCCATTCGTATCCGCAAAGAGAACCAGGTCT
ATACAGccctggagaagaaggctttAGCGCTCATTCAGCTCGAGGAGAAC
AAACAGAAGGAAGCGACCTTACTGGCAAATTTCCGACAAGCATTGGAAAA
gcggaaagagaaagagggggagggggaaaatgtggATGAGGTTTGA
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Synonyms
Publications