EWM22787.1, cds7883 (CDS) Nannochloropsis gaditana

Overview
NameEWM22787.1
Unique Namecds7883
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:63517..63598 +
Alignment locationKK037247.1:63818..63867 +
Alignment locationKK037247.1:64087..64236 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22787.1
ProductProtein of unknown function DUF926
Orig transcript idgnl|cribi|Naga_100349g6.4133.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:63517..63598 +
KK037247.1supercontigKK037247.1:63818..63867 +
KK037247.1supercontigKK037247.1:64087..64236 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003682chromatin binding
Vocabulary: INTERPRO
TermDefinition
IPR009269DUF926
Homology
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|585103404|gb|EWM22787.1| (Protein of unknown function DUF926 [Nannochloropsis gaditana])

HSP 1 Score: 183.726 bits (465), Expect = 9.787e-59
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKRKEKEGEGENVDEV 93
            MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKRKEKEGEGENVDEV
Sbjct:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKRKEKEGEGENVDEV 93          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|219124523|ref|XP_002182551.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405897|gb|EEC45838.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 122.479 bits (306), Expect = 7.286e-34
Identity = 55/81 (67.90%), Postives = 72/81 (88.89%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKRK 81
            +RIPRRGE+G+ G+EIE+ E+ GYVMSG+RH RMNA+RIRKENQVY+A E++ALALI +EEN+QKEA L+ +FRQ LE++K
Sbjct:   54 LRIPRRGEIGYTGDEIEKHETSGYVMSGSRHARMNAVRIRKENQVYSAEEQRALALITMEENQQKEAALMQDFRQMLEEKK 134          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|676396939|ref|XP_009041747.1| (hypothetical protein AURANDRAFT_33894 [Aureococcus anophagefferens] >gi|323447618|gb|EGB03532.1| hypothetical protein AURANDRAFT_33894 [Aureococcus anophagefferens])

HSP 1 Score: 124.02 bits (310), Expect = 9.657e-34
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKRKEKEG 85
            MRIPRRGEVGWQGEEIERLES+GYVMSG+RH RMNA+RIRKENQVY+A EK+ALALI  EE +Q+E  ++  FR  L++R   +G
Sbjct:  102 MRIPRRGEVGWQGEEIERLESVGYVMSGSRHARMNAVRIRKENQVYSAEEKRALALITFEEKQQQENKVMGEFRAMLQQRLVSQG 186          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|695388001|ref|XP_009519063.1| (hypothetical protein PHYSODRAFT_485686 [Phytophthora sojae] >gi|348683960|gb|EGZ23775.1| hypothetical protein PHYSODRAFT_485686 [Phytophthora sojae])

HSP 1 Score: 122.479 bits (306), Expect = 1.580e-33
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKR 80
            MRIPRRGEVGW GEEIE LE+LGYVMSG+RHKRMNA+RIRKENQVYTA EK+ALALI  EE +Q+E  ++ +F++ L +R
Sbjct:   70 MRIPRRGEVGWNGEEIENLENLGYVMSGSRHKRMNAVRIRKENQVYTAEEKRALALINFEEKQQRENAIMNDFKEMLTER 149          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|953502320|emb|CEG36506.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 122.479 bits (306), Expect = 1.822e-33
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKR 80
            MRIPRRGEVGW GEEIE LE+LGYVMSG+RHKRMNA+RIRKENQVYTA EK+ALALI  EE +Q+E  ++ +F++ L  R
Sbjct:   77 MRIPRRGEVGWNGEEIENLENLGYVMSGSRHKRMNAVRIRKENQVYTAEEKRALALINFEEKQQRENAIMNDFKEMLTAR 156          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|301114681|ref|XP_002999110.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111204|gb|EEY69256.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 125.946 bits (315), Expect = 5.208e-33
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKR 80
            MRIPRRGEVGW GEEIE LE+LGYVMSGNRHKRMNA+RIRKENQVYTA EK+ALALI  EE +Q+E  ++ +F++ L  R
Sbjct:  258 MRIPRRGEVGWHGEEIENLENLGYVMSGNRHKRMNAVRIRKENQVYTAEEKRALALINFEEKQQRENAIMNDFKEMLTAR 337          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|970660902|gb|KUF98414.1| (Ras-related protein Rab-5B [Phytophthora nicotianae])

HSP 1 Score: 123.25 bits (308), Expect = 1.722e-32
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKR 80
            MRIPRRGEVGW GEEIE LE+LGYVMSG+RHKRMNA+RIRKENQVYTA EK+ALALI  EE +Q+E  ++ +F++ L  R
Sbjct:  198 MRIPRRGEVGWNGEEIENLENLGYVMSGSRHKRMNAVRIRKENQVYTAEEKRALALINFEEKQQRENAIMNDFKEMLTAR 277          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|1214697977|gb|OWZ11111.1| (hypothetical protein PHMEG_00015917 [Phytophthora megakarya])

HSP 1 Score: 123.25 bits (308), Expect = 3.757e-32
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKR 80
            MRIPRRGEVGW GEEIE LE+LGYVMSG+RHKRMNA+RIRKENQVYTA EK+ALALI  EE +Q+E  ++ +F++ L +R
Sbjct:  229 MRIPRRGEVGWNGEEIENLENLGYVMSGSRHKRMNAVRIRKENQVYTAEEKRALALINFEEKQQRENAIMNDFKEMLTER 308          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|970634944|gb|KUF79978.1| (hypothetical protein AM587_10017628 [Phytophthora nicotianae])

HSP 1 Score: 123.25 bits (308), Expect = 5.472e-32
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKR 80
            MRIPRRGEVGW GEEIE LE+LGYVMSG+RHKRMNA+RIRKENQVYTA EK+ALALI  EE +Q+E  ++ +F++ L  R
Sbjct:  255 MRIPRRGEVGWNGEEIENLENLGYVMSGSRHKRMNAVRIRKENQVYTAEEKRALALINFEEKQQRENAIMNDFKEMLTAR 334          
BLAST of EWM22787.1 vs. NCBI_GenBank
Match: gi|635372057|emb|CCI39665.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 122.865 bits (307), Expect = 5.958e-32
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MRIPRRGEVGWQGEEIERLESLGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFRQALEKR 80
            MRIPRRGEVGW G+EIE+LE LGYVMSG+RHK+MNA+RIRKENQVYTA EK+ALALI  EE +Q+E  +++ FR  L +R
Sbjct:  238 MRIPRRGEVGWNGQEIEQLEDLGYVMSGSRHKKMNAVRIRKENQVYTAEEKRALALINFEEKQQREHAIMSQFRDMLTER 317          
The following BLAST results are available for this feature:
BLAST of EWM22787.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103404|gb|EWM22787.1|9.787e-59100.00Protein of unknown function DUF926 [Nannochloropsi... [more]
gi|219124523|ref|XP_002182551.1|7.286e-3467.90predicted protein, partial [Phaeodactylum tricornu... [more]
gi|676396939|ref|XP_009041747.1|9.657e-3469.41hypothetical protein AURANDRAFT_33894 [Aureococcus... [more]
gi|695388001|ref|XP_009519063.1|1.580e-3371.25hypothetical protein PHYSODRAFT_485686 [Phytophtho... [more]
gi|953502320|emb|CEG36506.1|1.822e-3371.25Uncharacterized conserved protein [Plasmopara hals... [more]
gi|301114681|ref|XP_002999110.1|5.208e-3372.50conserved hypothetical protein [Phytophthora infes... [more]
gi|970660902|gb|KUF98414.1|1.722e-3271.25Ras-related protein Rab-5B [Phytophthora nicotiana... [more]
gi|1214697977|gb|OWZ11111.1|3.757e-3271.25hypothetical protein PHMEG_00015917 [Phytophthora ... [more]
gi|970634944|gb|KUF79978.1|5.472e-3271.25hypothetical protein AM587_10017628 [Phytophthora ... [more]
gi|635372057|emb|CCI39665.1|5.958e-3270.00unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7905rna7905Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications